cluster # 8776

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Oryza sativa
cluster # 8776 cluster # 8776 Sequences # 5 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_8776#0 length = 1013 sequences # 3

consensus_8776#1 length = 415 sequences # 2

consensusID : consensus_8776#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 1013
fasta sequence

                              [CTCGCCTCGGTTGTTTCGTCCCAGGAAACTCGATTCTGCTTCTGAATCGGATTTTCCCAGGGATTTCGCCGGCGGCTAGGATCGGGTCGGGGGTCCGCCATGGCCGACGTGTTCGAGGGCTACGAGCGCCAGTACTGCGAGATCTCCGCCTCCCTCGCCCGCAAGTGCACCGCTGCCTCCGCTCTCCAAGGAGAGAAGCTGAAGCAGAAGGCGTCGGAGATCAAGTCTGGCATCGATGGGGCCGAGGCACTGATAAAGAAGATGGATCTTGAAGCAAGGAACCAACAGCCAAGTGTGAGGGCTGGGCTGCTGGCAAAACTGAGGGAGTACAAGTCAGATCTTAACAACCTGAAAGGAACGTTGAAGAGGGTCACCACCGGTAACGCGCAGCAAGGGTCGAGGGAAGAGTTGCTGGAGTCAGGAATGGCTGAAACGTTGGGGGTATCTGCTGATCAAAAGTCAAGATTGCTCAGGATAACTGAAAAGCAAAATAAAACAACCGATAGGATCAGAGATAGCCACAGAACTATGCTGGAGACTGAAGATCTTGGAGTCTCCCTCTTGCAGGACCTGCATCAACAGCGTGAACGTCTAATACATGCTCATGGCACATTGGATAACGTGGATGACAACATCGGGAAGAGTAGAAGGATCATGGGTGCCATGGTGAGGAGGATGGACAGGAACAAGTGGATCATAGGTTTCATTATAGCTCTCCTTGTGTTGGTGATCCTAGTAATCCTGTATTTCAAGTTTGTGCACTGAGGGACTCCTTGACCATCCAAGGACTGATGAACTGTGTGCGTTCTTTGCATATTCGTTTTGTCTTATTTCTTTTTTTGGGTTTGGACGAAACCATTTCATGTGGTGGTTGTGAATGTGTTTTGGTCATGTAAAAAAAGTGAGAAGGTTTTGAGTATCTGATAGTTTCATGGATCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]

[+] EMBL AK102003             [CTCGCCTCGGTTGTTTCGTCCCAGGAAACTCGATTCTGCTTCTGAATCGGATTTTCCCAGGGATTTCGCCGGCGGCTAGGATCGGGTCGGGGGTCCGCCATGGCCGACGTGTTCGAGGGCTACGAGCGCCAGTACTGCGAGATCTCCGCCTCCCTCGCCCGCAAGTGCACCGCTGCCTCCGCTCTCCAAGGAGAGAAGCTGAAGCAGAAGGCGTCGGAGATCAAGTCTGGCATCGATGGGGCCGAGGCACTGATAAAGAAGATGGATCTTGAAGCAAGGAACCAACAGCCAAGTGTGAGGGCTGGGCTGCTGGCAAAACTGAGGGAGTACAAGTCAGATCTTAACAACCTGAAAGGAACGTTGAAGAGGGTCACCACCGGTAACGCGCAGCAAGGGTCGAGGGAAGAGTTGCTGGAGTCAGGAATGGCTGAAACGTTGGGGGTATCTGCTGATCAAAAGTCAAGATTGCTCAGGATAACTGAAAAGCAAAATAAAACAACCGATAGGATCAGAGATAGCCACAGAACTATGCTGGAGACTGAAGATCTTGGAGTCTCCCTCTTGCAGGACCTGCATCAACAGCGTGAACGTCTAATACATGCTCATGGCACATTGGATAACGTGGATGACAACATCGGGAAGAGTAGAAGGATCATGGGTGCCATGGTGAGGAGGATGGACAGGAACAAGTGGATCATAGGTTTCATTATAGCTCTCCTTGTGTTGGTGATCCTAGTAATCCTGTATTTCAAGTTTGTGCACTGAGGGACTCCTTGACCATCCAAGGACTGATGAACTGTGTGCGTTCTTTGCATATTCGTTTTGTCTTATTTCTTTTTTTGGGTTTGGACGAAACCATTTCATGTGGTGGTTGTGAATGTGTTTTGGTCATGTAAAAAAAGTGAGAAGGTTTTGAGTATCTGATAGT                                                                                     ]
[+] EMBL C28260               [                            CTCGATTCTNCTTCTGAATCGGATTTTCCCAGGGATTTCGCCGGCGGCTAGGATCGGGTCGGGGGTCCGCCATGGCCGACGTGTTCGAGGGCTACGAGCGCCAGTACTGCGAGATCTCCGCCTCCCTCGCCCGCAAGTGCACCGCTGCCTCCGCTCTCCAAGGAGAGAAGCTGAAGCAGAAGGCGTCGGAGATCAAGTCTGGCATCGATGGGGCCGAGGCACTGATAAAGAAGATGGATCTTGAAGCAAGGAACCAACAGCCAAGTGTGAGGGCTGGGCTGCTGGCAAAACTGAGGGAGTACAAGTCAGATCTTAACAACCTGAAA GAACGTTGAAGAGGGTCACCACCGGTAACGCGCAGAAGGGGTCGAGGGAAGAGTTTCTGGAGTCAGGAATGGCTNAAACGTTNGGGGTATCTGCTGAT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                ]
[+] EMBL CF334951             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  GTGCCATGGTGAGGAGGATGGACAGGAACAAGTGGATCATAGGTTTCATTATAGCTCTCCTTGTGTTGGTGATCCTAGTAATCCTGTATTTCAAGTTTGTGCACTGAGGGACTCCTTGACCATCCAAGGACTGATGAACTGTGTGCGTTCTTTGCATATTCGTTTTGTCTTATTTCTTTTTTTGGGTTTGGACGAAACCATTTCATGTGGTGGTTGTGAATGTGTTTTGGTCATGTAAAAAAAGTGAGAAGGTTTTGAGTATCTGATAGTTTCATGGATCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]




>consensus_8776#0
CTCGCCTCGGTTGTTTCGTCCCAGGAAACTCGATTCTGCTTCTGAATCGGATTTTCCCAG
GGATTTCGCCGGCGGCTAGGATCGGGTCGGGGGTCCGCCATGGCCGACGTGTTCGAGGGC
TACGAGCGCCAGTACTGCGAGATCTCCGCCTCCCTCGCCCGCAAGTGCACCGCTGCCTCC
GCTCTCCAAGGAGAGAAGCTGAAGCAGAAGGCGTCGGAGATCAAGTCTGGCATCGATGGG
GCCGAGGCACTGATAAAGAAGATGGATCTTGAAGCAAGGAACCAACAGCCAAGTGTGAGG
GCTGGGCTGCTGGCAAAACTGAGGGAGTACAAGTCAGATCTTAACAACCTGAAAGGAACG
TTGAAGAGGGTCACCACCGGTAACGCGCAGCAAGGGTCGAGGGAAGAGTTGCTGGAGTCA
GGAATGGCTGAAACGTTGGGGGTATCTGCTGATCAAAAGTCAAGATTGCTCAGGATAACT
GAAAAGCAAAATAAAACAACCGATAGGATCAGAGATAGCCACAGAACTATGCTGGAGACT
GAAGATCTTGGAGTCTCCCTCTTGCAGGACCTGCATCAACAGCGTGAACGTCTAATACAT
GCTCATGGCACATTGGATAACGTGGATGACAACATCGGGAAGAGTAGAAGGATCATGGGT
GCCATGGTGAGGAGGATGGACAGGAACAAGTGGATCATAGGTTTCATTATAGCTCTCCTT
GTGTTGGTGATCCTAGTAATCCTGTATTTCAAGTTTGTGCACTGAGGGACTCCTTGACCA
TCCAAGGACTGATGAACTGTGTGCGTTCTTTGCATATTCGTTTTGTCTTATTTCTTTTTT
TGGGTTTGGACGAAACCATTTCATGTGGTGGTTGTGAATGTGTTTTGGTCATGTAAAAAA
AGTGAGAAGGTTTTGAGTATCTGATAGTTTCATGGATCAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

consensusID : consensus_8776#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 415
fasta sequence

                              [CGGGAAGAGTAGAAGGATCACTGGGTGCCACTGGTGAGGAGGATGGACCAGGAACCACAGTGGATCATAGGTTTCATTATAGCTCTCCTTGTGTTGGTGATCCTAGTAATCCTGTATTTCAAGTTTGTGCACCTGAGGGACTCCTTGACCATCCAAGGACTGATGAACTGTGTGCGTTCTTTGCATATTCGCNCTTTGTCCTATTTCTTTTTTTGGGTTTGGACGAAACCACTTTCATGTGGTGGTTGTGAATGTGTTTTGGTCATGT-AAAAAAGTGAGAAGGTTTTGAGTATCTGATAGTTTCATGGATC-AATGGATTTTCATTTATAATTCTGGACAGCTCNAATAAATG-ACCATTTTGTGCA--AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]

[+] EMBL BM038924             [CGGGAAGAGTAGAAGGATCACTGGGTGCCACTGGTGAGGAGGATGGACCAGGAACCACAGTGGATCATAGGTTTCATTATAGCTCTCCTTGTGTTGGTGATCCTAGTAATCCTGTATTTCAAGTTTGTGCACCTGAGGGACTCCTTGACCATCCAAGGACTGATGAACTGTGTGCGTTCTTTGCATATTCGCNCTTTGTCCTATTTCTTTTTTTGGGTTTGGACGAAACCACTTTCATGTGGTGGTTGTGAATGTGTTTTGGTCATGT AAAAAAGTGAGAAGGTTTTGAGTATCTGATAGTTTCATGGATC AATGGATTTTCATTTATAATTCTGGACAGCTCNAATAAATG ACCATTTTGTGCA  AAAA                                              ]
[+] EMBL C97620               [                                                                                                                                                       TCCAAGGACTGATGAACTGTGTGCGTTCTTTGCATATTCG  TTTTGTCTTATTTCTTTTTTTGGGTTTGGACGAAACCA TTTCATGTGGTGGTTGTGAATGTGTTTTGGTCATGTAAAAAAAGTGAGAAGGTTTTGAGTATCTGATAGTTTCATGGATCAAATGGATTTTCATTTATAATTNTGGACAGCT AAATAAATGNGCAATTTTGTGCATCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]




>consensus_8776#1
CGGGAAGAGTAGAAGGATCACTGGGTGCCACTGGTGAGGAGGATGGACCAGGAACCACAG
TGGATCATAGGTTTCATTATAGCTCTCCTTGTGTTGGTGATCCTAGTAATCCTGTATTTC
AAGTTTGTGCACCTGAGGGACTCCTTGACCATCCAAGGACTGATGAACTGTGTGCGTTCT
TTGCATATTCGCNCTTTGTCCTATTTCTTTTTTTGGGTTTGGACGAAACCACTTTCATGT
GGTGGTTGTGAATGTGTTTTGGTCATGTAAAAAAGTGAGAAGGTTTTGAGTATCTGATAG
TTTCATGGATCAATGGATTTTCATTTATAATTCTGGACAGCTCNAATAAATGACCATTTT
GTGCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_8776#0      CTCGCCTCGGTTGTTTCGTCCCAGGAAACTCGATTCTGCTTCTGAATCGGATTTTCCCAG 60
consensus_8776#1      ------------------------------------------------------------
                                                                                  

consensus_8776#0      GGATTTCGCCGGCGGCTAGGATCGGGTCGGGGGTCCGCCATGGCCGACGTGTTCGAGGGC 120
consensus_8776#1      ------------------------------------------------------------
                                                                                  

consensus_8776#0      TACGAGCGCCAGTACTGCGAGATCTCCGCCTCCCTCGCCCGCAAGTGCACCGCTGCCTCC 180
consensus_8776#1      ------------------------------------------------------------
                                                                                  

consensus_8776#0      GCTCTCCAAGGAGAGAAGCTGAAGCAGAAGGCGTCGGAGATCAAGTCTGGCATCGATGGG 240
consensus_8776#1      ------------------------------------------------------------
                                                                                  

consensus_8776#0      GCCGAGGCACTGATAAAGAAGATGGATCTTGAAGCAAGGAACCAACAGCCAAGTGTGAGG 300
consensus_8776#1      ------------------------------------------------------------
                                                                                  

consensus_8776#0      GCTGGGCTGCTGGCAAAACTGAGGGAGTACAAGTCAGATCTTAACAACCTGAAAGGAACG 360
consensus_8776#1      ------------------------------------------------------------
                                                                                  

consensus_8776#0      TTGAAGAGGGTCACCACCGGTAACGCGCAGCAAGGGTCGAGGGAAGAGTTGCTGGAGTCA 420
consensus_8776#1      ------------------------------------------------------------
                                                                                  

consensus_8776#0      GGAATGGCTGAAACGTTGGGGGTATCTGCTGATCAAAAGTCAAGATTGCTCAGGATAACT 480
consensus_8776#1      ------------------------------------------------------------
                                                                                  

consensus_8776#0      GAAAAGCAAAATAAAACAACCGATAGGATCAGAGATAGCCACAGAACTATGCTGGAGACT 540
consensus_8776#1      ------------------------------------------------------------
                                                                                  

consensus_8776#0      GAAGATCTTGGAGTCTCCCTCTTGCAGGACCTGCATCAACAGCGTGAACGTCTAATACAT 600
consensus_8776#1      ------------------------------------------------------------
                                                                                  

consensus_8776#0      GCTCATGGCACATTGGATAACGTGGATGACAACATCGGGAAGAGTAGAAGGATCA-TGGG 659
consensus_8776#1      -----------------------------------CGGGAAGAGTAGAAGGATCACTGGG 25
                                                         ******************** ****

consensus_8776#0      TGCCA-TGGTGAGGAGGATGGAC-AGGAACAA--GTGGATCATAGGTTTCATTATAGCTC 715
consensus_8776#1      TGCCACTGGTGAGGAGGATGGACCAGGAACCACAGTGGATCATAGGTTTCATTATAGCTC 85
                      ***** ***************** ****** *  **************************

consensus_8776#0      TCCTTGTGTTGGTGATCCTAGTAATCCTGTATTTCAAGTTTGTGCAC-TGAGGGACTCCT 774
consensus_8776#1      TCCTTGTGTTGGTGATCCTAGTAATCCTGTATTTCAAGTTTGTGCACCTGAGGGACTCCT 145
                      *********************************************** ************

consensus_8776#0      TGACCATCCAAGGACTGATGAACTGTGTGCGTTCTTTGCATATTCGTT--TTGTCTTATT 832
consensus_8776#1      TGACCATCCAAGGACTGATGAACTGTGTGCGTTCTTTGCATATTCGCNCTTTGTCCTATT 205
                      **********************************************    ***** ****

consensus_8776#0      TCTTTTTTTGGGTTTGGACGAAACCA-TTTCATGTGGTGGTTGTGAATGTGTTTTGGTCA 891
consensus_8776#1      TCTTTTTTTGGGTTTGGACGAAACCACTTTCATGTGGTGGTTGTGAATGTGTTTTGGTCA 265
                      ************************** *********************************

consensus_8776#0      TGTAAAAAAAGTGAGAAGGTTTTGAGTATCTGATAGTTTCATGGATCAAAAAA------- 944
consensus_8776#1      TGTAAAAAA-GTGAGAAGGTTTTGAGTATCTGATAGTTTCATGGATCAATGGATTTTCAT 324
                      ********* ***************************************   *       

consensus_8776#0      -----------AAAAAAAAAAAAAAAAAA-----------AAAAAAAAAAAAAAAAAAAA 982
consensus_8776#1      TTATAATTCTGGACAGCTCNAATAAATGACCATTTTGTGCAAAAAAAAAAAAAAAAAAAA 384
                                  * *     ** ***  *           ********************

consensus_8776#0      AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 1013
consensus_8776#1      AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 415
                      *******************************