cluster # 9051

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Oryza sativa
cluster # 9051 cluster # 9051 Sequences # 6 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_9051#0 length = 619 sequences # 5

consensus_9051#1 length = 357 sequences # 1

consensusID : consensus_9051#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 5
consensus length = 619
fasta sequence

                              [TCCTTCGCCAATCTCGCCATGAAACCTTGGACCGCCACCGTCTCCCTCCTCCTCGCCGCCGCCGTCGCCATGGCCGCGGCTGTCGCCGCCGGAGAAGGCGGCGCAGCTA-ATTACCTCGTCTTCGTCGACCCCCCGCCCTCCGGCGTCGTCTGCACCGCCTACCAGCTCTCCATCCTCGCCGCCGCGCTCGGCAGCGAGGAGAAGGCGAAGGGGGCAATCATATACAACTACAAGAACGTCGTGAGCGGGTTCTCGGCGAGGCTCACTCCGTCGGAGCTGGAGGCGGTTAAGAAGCAACCTCAGGTGAACCGGGTGCTACCGAGCGCGACATTGTCGCTCATGAGCAGCAACTTCGACGGCATCA-GCTGATGAGATCAAAACGAACGATTTCGCTGGGAGATCCGCTCGGT-G-TTTT-TAATTTT-AATTTCTC-GTGCTTT-CATGTT--CTTTTGCTGCGTGTAGGCGTGTGCTTTGGGTGATTGTGTAGCACACTGATTCAGCTTTTTTTTCTCCTTAATTAATCTTGTTTAAACTGCCGACGTGTGCTTATCTCTGTACTATGCAATTCTACGCTGTACAAATACTTGTCTATTTATGTGAATGGATAATTATAGACGAAAAA]

[+] EMBL AK121130             [TCCTTCGCCAATCTCGCCATGAAACCTTGGACCGCCACCGTCTCCCTCCTCCTCGCCGCCGCCGTCGCCATGGCCGCGGCTGTCGCCGCCGGAGAAGGCGGCGCAGCTA ATTACCTCGTCTTCGTCGACCCCCCGCCCTCCGGCGTCGTCTGCACCGCCTACCAGCTCTCCATCCTCGCCGCCGCGCTCGGCAGCGAGGAGAAGGCGAAGGGGGCAATCATATACAACTACAAGAACGTCGTGAGCGGGTTCTCGGCGAGGCTCACTCCGTCGGAGCTGGAGGCGGTTAAGAAGCAACCTCAGGTGAACCGGGTGCTACCGAGCGCGACATTGTCGCTCATGAGCAGCAACTTCGACGGCATCA GCTGATGAGATCAAAACGAACGATTTCGCTGGGAGATCCGCTCGGT G TTTT TAATTTT AATTTCTC GTGCTTT CATGTT  CTTTTGCTGCGTGTAGGCGTGTGCTTTGGGTGATTGTGTAGCACACTGATTCAGCTTTTTTTTCTCCTTAATTAATCTTGTTTAAACTGCCGACGTGTGCTTATCTCTGTACTATGCAATTCTACGCTGTACAAATACTTGTCTATTTATGTGAATGGA                 ]
[+] EMBL C72100               [               GCCATGAAACCTTGGACCGCCACCGTNTCCCTCCTCCTCGCCGACGCCGTCGCCATGGCCGCGGCTGTNGCCGTCGGAGAAG  GG GCAGCTAGATNACCTCGTNTTCGTCGACCCCCCGCCCTCCGGCGTCGTCTGCACCGCCTACCAGCTCTCCATNCTCGCNGCCGCGCTCGGNAGCNAGGAGAAGGCGAAGGGGGCAATCATATACAACTACAAGAACGTCGTNAGCGGGTTCTCGGCGAGGNTCACTCCGTCGGAGCTGGAGGCGGTTAANAAGCAACCTCAGGTGAACCGGGTGCTACCGA                                                                                                                                                                                                                                                                                                                  ]
[+] EMBL AU163411             [                             GACCGCCACCGTCTCCCTCCTCCTCGCCGCCGCCGTCGCCATGGCCGCGGCTGTCG CG CGGAGAA   GGCGCA CTA ATTACCTCGTCTTCGTCGACCCCCCGCCCTCCGGCGTCGTCTGCACCGCCTACCAGCTCTCCATCCTCGCCGCCGCGCTCGGCAGCGA GAGAAGGCGAAGGGGGCAATCATATACAACTACAAGAACGTCGTGAGCGGGTTCTCTGCGAGGCTCACTCCGTCGGA CTGGAGGC GTTAAGAAGCAACCTCAGGTGAACCGGGTGCTACCGAGCGCGACATTGTCGTCCATGAGCAGCAACTTCGACGGCATCANCCTGATGAGATCAAAACGAACGATTTCGCTGGGAGNTCCGCTCGGTAG TTTTCAAATTTTAAATTTCTCAGTGCTTTACATGGTNCCTTTTGgcctagc                                                                                                                                                                   ]
[+] EMBL AU164404             [                             GACCGCCACCGTCTCCCTCCTCCTCGCCGCCGCCGTCGCCATGGCCGCGGCTGTCGCCGNCGGAGAAGGCGG GCA NTA ATTACCTCGTCTTCGTCGACCCCCCGCCCTCCGGCGTCGTCTGCACCGCCTACCAGCTCTCCATCCTCGCCGCCGCGCTCGGCAGCGAGGAGAAGGCGAAGGGGGCAATCATATACAACTACAAGAACGTCGTGAGCGGGTTCTCGGCGAGGCTCACTCCGTCGGAGCTGGAGGCGGTTAAGAAGCAACCTCAGGTGAACCGGGTGCTACCGAGCGCGACATTGTCGTTCATGAGCAGCAACTTCGACGGCATCA GCTGATGAGATCAAAACGAACGATTTCGNTGGGAGATCCGTTCGGT G TTTT TAA TTT AATTTCTC GTGCTTTna                                                                                                                                                                                       ]
[+] EMBL AU093871             [                                                                                           GAGAAGGCGGCGCAGCTA ATTACCTCGTCTTCGTCGACCCCCCGCCNTCCGGCGTCGTCTGCACCGCCTACCAGNTCTCCATCCTCGCCGCCGCGNTCGGCAGCGAGGAGAAGGCGAAGGGGGCAATCATATACAACTACAAGAACGTCGTGAGCGGGTTCTCGGCGAGGCTCACTCCGTCGGAGCTGGAGGCGGTTAAGAAGCAACCTCAGGTGAACCGGGTGCTACCGAGCGCGACATTGTCGCTCATGAGCAGCAACTTCGACGGCATCA GCTGATGAGATCAAAACGAACGATTTCGCTGGGAGATCCGCTCGGT GTTTTT TAATTTT AATTTCTC GTGCTTT CATGTT  CTTTTGCTGCGTGTAGGCGTGTGCTTTGGGTGATTGTGTAGCACACTGATTCAGCTTTTTTTTCTCCTTAATTAATCTTGTTTAAACTGCCGACGTGTGCTTATCTCTGTACTATGCAATTCTACGCTGTACAAATACTTGTCTATTTATGTGAATGGATAATTATAGACGAAAAA]




>consensus_9051#0
TCCTTCGCCAATCTCGCCATGAAACCTTGGACCGCCACCGTCTCCCTCCTCCTCGCCGCC
GCCGTCGCCATGGCCGCGGCTGTCGCCGCCGGAGAAGGCGGCGCAGCTAATTACCTCGTC
TTCGTCGACCCCCCGCCCTCCGGCGTCGTCTGCACCGCCTACCAGCTCTCCATCCTCGCC
GCCGCGCTCGGCAGCGAGGAGAAGGCGAAGGGGGCAATCATATACAACTACAAGAACGTC
GTGAGCGGGTTCTCGGCGAGGCTCACTCCGTCGGAGCTGGAGGCGGTTAAGAAGCAACCT
CAGGTGAACCGGGTGCTACCGAGCGCGACATTGTCGCTCATGAGCAGCAACTTCGACGGC
ATCAGCTGATGAGATCAAAACGAACGATTTCGCTGGGAGATCCGCTCGGTGTTTTTAATT
TTAATTTCTCGTGCTTTCATGTTCTTTTGCTGCGTGTAGGCGTGTGCTTTGGGTGATTGT
GTAGCACACTGATTCAGCTTTTTTTTCTCCTTAATTAATCTTGTTTAAACTGCCGACGTG
TGCTTATCTCTGTACTATGCAATTCTACGCTGTACAAATACTTGTCTATTTATGTGAATG
GATAATTATAGACGAAAAA

consensusID : consensus_9051#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 357
fasta sequence

                              [CTTGGAAGTGCCGGTTAAAGAAAGCCAACCTNCAAGGTTGAAACCGGGTGCTTAACCCGGAAGCGACATTGTCGCTCATGGAGCAGNCAACTTCGACGGCATCAGCTGATGAGATCAAAACGAACGATTTCGCTGGGAGATCCGCTCGGTGTTTTTAATTTTAATTTCTCGTGCTTTCATGTTCTTTTGCTGCGTGTAGGCGTGTGCTTTGGGTGATTGTGTAGCACACTGATTCAGCTTTTTTTTCTCCTTAATTAATCTTGTTTAAACTGCCGACGTGTGCTTATCTCTGTACTATGCAATTCTACGCTGTACAAATACTTGTCTATTTATGTGAATGGATAATTATAGACGAAA]

[+] EMBL AU163412             [CTTGGAAGTGCCGGTTAAAGAAAGCCAACCTNCAAGGTTGAAACCGGGTGCTTAACCCGGAAGCGACATTGTCGCTCATGGAGCAGNCAACTTCGACGGCATCAGCTGATGAGATCAAAACGAACGATTTCGCTGGGAGATCCGCTCGGTGTTTTTAATTTTAATTTCTCGTGCTTTCATGTTCTTTTGCTGCGTGTAGGCGTGTGCTTTGGGTGATTGTGTAGCACACTGATTCAGCTTTTTTTTCTCCTTAATTAATCTTGTTTAAACTGCCGACGTGTGCTTATCTCTGTACTATGCAATTCTACGCTGTACAAATACTTGTCTATTTATGTGAATGGATAATTATAGACGAAA]




>consensus_9051#1
CTTGGAAGTGCCGGTTAAAGAAAGCCAACCTNCAAGGTTGAAACCGGGTGCTTAACCCGG
AAGCGACATTGTCGCTCATGGAGCAGNCAACTTCGACGGCATCAGCTGATGAGATCAAAA
CGAACGATTTCGCTGGGAGATCCGCTCGGTGTTTTTAATTTTAATTTCTCGTGCTTTCAT
GTTCTTTTGCTGCGTGTAGGCGTGTGCTTTGGGTGATTGTGTAGCACACTGATTCAGCTT
TTTTTTCTCCTTAATTAATCTTGTTTAAACTGCCGACGTGTGCTTATCTCTGTACTATGC
AATTCTACGCTGTACAAATACTTGTCTATTTATGTGAATGGATAATTATAGACGAAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_9051#0      TCCTTCGCCAATCTCGCCATGAAACCTTGGACCGCCACCGTCTCCCTCCTCCTCGCCGCC 60
consensus_9051#1      ------------------------------------------------------------
                                                                                  

consensus_9051#0      GCCGTCGCCATGGCCGCGGCTGTCGCCGCCGGAGAAGGCGGCGCAGCTAATTACCTCGTC 120
consensus_9051#1      ------------------------------------------------------------
                                                                                  

consensus_9051#0      TTCGTCGACCCCCCGCCCTCCGGCGTCGTCTGCACCGCCTACCAGCTCTCCATCCTCGCC 180
consensus_9051#1      ------------------------------------------------------------
                                                                                  

consensus_9051#0      GCCGCGCTCGGCAGCGAGGAGAAGGCGAAGGGGGCAATCATATACAACTACAAGAACGTC 240
consensus_9051#1      ------------------------------------------------------------
                                                                                  

consensus_9051#0      GTGAGCGGGTTCTCGGCGAGGCTCACTCCGTCGGAGCTGGAGGCGGTTAAGAAGCAACCT 300
consensus_9051#1      -----------------------------CTTGGAAGTGCCGGTTAAAGAAAGCCAACCT 31
                                                    * ***  **  **      * *  ******

consensus_9051#0      C--AGGT--GAACCGGGTGCTA---CCGAGCGCGACATTGTCGCTCATG-AGCAGC-AAC 351
consensus_9051#1      NCAAGGTTGAAACCGGGTGCTTAACCCGGAAGCGACATTGTCGCTCATGGAGCAGNCAAC 91
                         ****   ***********    ***   ****************** *****  ***

consensus_9051#0      TTCGACGGCATCAGCTGATGAGATCAAAACGAACGATTTCGCTGGGAGATCCGCTCGGTG 411
consensus_9051#1      TTCGACGGCATCAGCTGATGAGATCAAAACGAACGATTTCGCTGGGAGATCCGCTCGGTG 151
                      ************************************************************

consensus_9051#0      TTTTTAATTTTAATTTCTCGTGCTTTCATGTTCTTTTGCTGCGTGTAGGCGTGTGCTTTG 471
consensus_9051#1      TTTTTAATTTTAATTTCTCGTGCTTTCATGTTCTTTTGCTGCGTGTAGGCGTGTGCTTTG 211
                      ************************************************************

consensus_9051#0      GGTGATTGTGTAGCACACTGATTCAGCTTTTTTTTCTCCTTAATTAATCTTGTTTAAACT 531
consensus_9051#1      GGTGATTGTGTAGCACACTGATTCAGCTTTTTTTTCTCCTTAATTAATCTTGTTTAAACT 271
                      ************************************************************

consensus_9051#0      GCCGACGTGTGCTTATCTCTGTACTATGCAATTCTACGCTGTACAAATACTTGTCTATTT 591
consensus_9051#1      GCCGACGTGTGCTTATCTCTGTACTATGCAATTCTACGCTGTACAAATACTTGTCTATTT 331
                      ************************************************************

consensus_9051#0      ATGTGAATGGATAATTATAGACGAAAAA 619
consensus_9051#1      ATGTGAATGGATAATTATAGACGAAA-- 357
                      **************************