cluster # 9223

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Oryza sativa
cluster # 9223 cluster # 9223 Sequences # 6 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_9223#0 length = 842 sequences # 5

consensus_9223#1 length = 479 sequences # 1

consensusID : consensus_9223#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 5
consensus length = 842
fasta sequence

                              [TCCTTTTTTTTTTTTTGATTATTCACACAATATATTATATATGAAACATTGAACGTCATAAGAGGTAAATAAACATTGAAGCACAAACAAATATACCACCGGAACAAGCCAACACAGGTATGCAGAAAATATTCCAGAATGCATGGCGATGGAACATCAGCATATATACATATATGCAATGGTCCAAGCAAGAAGGTGACAAGAGATGCAATTTACTCCCTCCGTTTGATAACCTCTCATATTATAAATCATTTTGACTTTTTTCTTAATCAAATTTCTTTAAGTTTCATCGAATATGTAAAAAAAAATTAGT--------AAAAAAAAATAGCAATCCAAAACACCAAAATTTTTGATAATATGTTTGTTTTGTGCTGAAAATATTGTTAAAATTGGTCAAATTAACTTAAAAAATTAAGTTTGATTAAGAGAAAAGTCAGAACGATTTATAATACGAAACGGAGGGAGCGATACATATGCAGAGCAGGGAGTGGTAATTATATTACTCGGTCATACGCTGCTTCCGGGGTGATGCTCCTGCTTCGGACGCTCAAGGATGCCGGCGTGCGAGAGCAAAGCCCAGAGATGGGTGATGAACTCGCCTCCCTTGGCGAGCCGCTGGATGTGCTCTTTGACATTGTCTGACGGCGAGATGTAGAGCAACATCTCAGGCCAGAAGTCGGCCAGGACCTTCCAACGCATCTTCTCTGGCATCTCCTCCAGCTGCTTCCCCAGCTTCAAGCCACTCTCGAATATGCTCTTAGTTGGCTCGCCCTCCGGTGGTGGCTCATAGCCTTGCAGGGCCATGGCGTCGAACTCCTTTTTTCCACGTTCACGAAGAAACTGCA]

[+] EMBL CB635754             [TCCTTTTTTTTTTTTTGATTATTCACACAATATATTATATATGAAACATTGAACGTCATAAGAGGTAAATAAACATTGAAGCACAAACAAATATACCACCGGAACAAGCCAACACAGGTATGCAGAAAATATTCCAGAATGCATGGCGATGGAACATCAGCATATATACATATATGCAATGGTCCAAGCAAGAAGGTGACAAGAGATGCAATTTACTCCCTCCGTTTGATAACCTCTCATATTATAAATCATTTTGACTTTTTTCTTAATCAAATTTCTTTAAGTTTCATCGAATATGTAAAAAAAAATTAGT        AAAAAAAAATAGCAATCCAAAACACCAAAATTTTTGATAATATGTTTGTTTTGTGCTGAAAATATTGTTAAAATTGGTCAAATTAACTTAAAAAATTAAGTTTGATTAAGAGAAAAGTCAGAACGATTTATAATACGAAACGGAGGGAGCGATACATATGCAGAGCAGGGAGTGGTAATTATATTACTCGGTCATACGCTGCTTCCGGGGTGATGCTCCTGCTTCGGACGCTCAAGGATGCCGGCGTGCGAGAGCAAAGCCCAAAGATGGGTGATGAACTCGCCTCCCTTGGCGAGCCGCTGGATGTGCTCTTTGACATTGTCTGACGGCGAGATGTAGAGCAACATCTCAGGCCAGAAGTCGGCCAGGACCTTCCAACGCATCTTCTCTGGCATCTCCTCCAGCTGCTTCCCCAGCTTCAAGCCACTCTCGAATATGCTCTTAGTTGGCTCGCCCTCCGGTGGTGGCTCATAGCCTTGCAGGGCCATGGCG                                     ]
[+] EMBL CB633324             [      tcTTTTTATTGATTATTCACACAATATATTATATATGAAACCCTGAACGTCATAAGAGGTAAATAAACATTGAAGCACAAACAAATATACCACCGGAACAAGCCAACACAGGTATGCAAAAAATATTCCAGAATGCATGGCGATGGAACATCAGCATATATACATATATGCAATGGTCCAAGCAAGAAGGTGACAAGAGATGCAATTTACTCCCTCCGTTTGATAACCTCTCATATTATAAATCATTTTGACTTTTTTCTTAATCAAATTTCTTTAAGTTTCATCGAATATGTAAAAAAAAATTAGTA       AAAAAAAAATAGCAATCCAAAACACCAAAATTTTTGATAATATGTTTGTTTTGTGCTGAAAATATTGTTAAAATTGGTCAAATTAACTTAAAAAATTAAGTTTGATTAAGAGAAAAGTCAGAACGATTTATAATACGAAACGGAGGGAGCGATACATATGCAGAGCAGGGAGTGGTAATTATATTACTCGGTCATACGCTGCTTCCGGGGTGATGCTCCTGCTTCGGACGCTCAAGGATGCCGGCGTGCGAGAGCAAAGCCCAGAGATGGGTGATGAACTCGCCTCCCTTGGCGAGCCGCTGGATGTGCTCTTTGACATTGTCTGACGGCGAGATGTAGAGCAACATCTCAGGCCAGAAGTCGGCCAGGACCTTCCAACGCATCTTCTCTGGCATCTCCTCCAGCTGCTTCCCCAGCTTCAAGCCACTCTCGA                                                                                                ]
[+] EMBL CB631460             [                GATTATTCACACAATATATTATATATGAAACACTGAACGTCATAAGAGGTAAATAAACATTGAAGCACAAACAAATATACCACCGGAACAAGCCAACACAGGTATGCAGAAAATATTCCAGAATGCATGGCGATGGAACATCAGCATATATACATATATGCAATGGTCCAAGCAAGAAGGTGACAAGAGATGCAATTTACTCCCTCCGTTTGATAACCTCTCATATTATAAATCATTTTGACTTTTTTCTTAATCAAATTTCTTTAAGTTTCATCGAATATGTAAAAAAAAATTAGTAAAAAAAAAAAAAAAAATAGCAATCCAAAACACCAAAATTTTTGATAATATGTTTGTTTTGTGCTGAAAATATTGTTAAAATTGGTCAAATTAACTTAAAAAATTAAGTTTGATTAAGAGAAAAGTCAGAACGATTTATAATACGAAACGGAGGGAGCGATACATATGCAGAGCAGGGAGTGGTAATTATATTACTCGGTCATACGCTGCTTCCGGGGTGATGCTCCTGCTTCGGACGCTCAAGGATGCCGGCGTGCGAGAGCAAAGCCCAGAGATGGGTGATGAACTCGCCTCCCTTGGCGAGCCGCTGGATGTGCTCTTTGACATTGTCTGACGGCGAGATGTAGAGCAACATCTCAGGCCAGAAGTCGGCCAGGACCTTCCAACGCATCTTCTCTGGCATCTCCTCCAGCTGCTTCCCCAGCTTCAAGCCACTCTCGAATATGCTCTTAGTTGGCTCGCCCTCCGGTGGTGGCTCATAGCCTTG                                                  ]
[+] EMBL CB629772             [                         CACAATATATTATATATGAAACATTGAACGTCATAAGAGGTAAATAAACATTGAAGCACAAACAAATATACCACCGGAACAAGCCAACACAGGTATGCAGAAAATATTCCAGAATGCATGGCGATGGAACATCAGCATATATACATATATGCAATGGTCCAAGCAAGAAGGTGACAAGAGATGCAATTTACTCCCTCCGTTTGATAACCTCTCATATTATAAATCATTTTGACTTTTTTCTTAATCAAATTTCTTTAAGTTTCATCGAATATGTAAAAAAAAATTAGT        AAAAAAAAATAGCAATCCAAAACACCAAAATTTTTGATAATATGTTTGTTTTGTGCTGAAAATATTGTTAAAATTGGTCAAATTAACTTAAAAAATTAAGTTTGATTAAGAGAAAAGTCAGAACGATTTATAATACGAAACGGAGGGAGCGATACATATGCAGAGCAGGGAGTGGTAATTATATTACTCGGTCATACGCTGCTTCCGGGGTGATGCTCCTGCTTCGGACGCTCAAGGATGCCGGCGTGCGAGAGCAAAGCCCAGAGATGGGTGATGAACTCGCCTCCCTTGGCGAGCCGCTGGATGTGCTCTTTGACATTGTCTGACGGCGAGATGTAGAGCAACATCTCAGGCCAGAAGTCGGCCAGGACCTTCCAACGCATCTTCTCTGGCATCTCCTCCAGCTGCTTCCCCAGCTTCAAGCCACTCTCGAATATGCTCTTAGTTGGCTCGCCCTCCGGTGGTGGCTCATAGCCTTGCAGGGCCATGGCGTCGAACTCCTTTTTTCCACGTTCACGAAGAAACTGCA]
[+] EMBL CB633211             [                         CACAATATATTATATATGCCACATTGAACGTCATAAGAGGTAAATAAACATTGAAGCACAAACAAATATACCACCGGAACAAGCCAACACAGGTATGCAGAAAATATTCCAGAATGCATGGCGATGGAACATCAGCATATATACATATATGCAATGGTCCAAGCAAGAAGGTGACAAGAGATGCAATTTACTCCCTCCGTTTGATAACCTCTCATATTATAAATCATTTTGACTTTTTTCTTAATCAAATTTCTTTAAGTTTCATCGAATATGTAAAAAAAAATTAGT        AAAAAAAAATAGCAATCCAAAACACCAAAATTTTTGATAATATGTTTGTTTTGTGCTGAAAATATTGTTAAAATTGGTCAAATTAACTTAAAAAATTAAGTTTGATTAAGAGAAAAGTCAGAACGATTTATAATACGAAACGGAGGGAGCGATACATATGCAGAGCAGGGAGTGGTAATTATATTACTCGGTCATACGCTGCTTCCGGGGTGATGCTCCTGCTTCGGACGCTCAAGGATGCCGGCGTGCGAGAGCAAAGCCCAGAGATGGGTGATGAACTCGCCTCCCTTGGCGAGCCGCTGGATGTGCTCTTTGACATTGTCTGACGGCGAGATGTAGAGCAACATCTCAGGCCAGAAGTCGGCCAGGACCTTCCAACGCATCTTCTCTGGCATCTCCTCCAGCTGCTTCCCCAGCTTCAAGCCACTCTCGAATATGCTCTTAGTTGGCTCGCCCTCCGGTGGTGGCTCATAGCCTTGCAGGGCCATGGCGTCG                                  ]




>consensus_9223#0
TCCTTTTTTTTTTTTTGATTATTCACACAATATATTATATATGAAACATTGAACGTCATA
AGAGGTAAATAAACATTGAAGCACAAACAAATATACCACCGGAACAAGCCAACACAGGTA
TGCAGAAAATATTCCAGAATGCATGGCGATGGAACATCAGCATATATACATATATGCAAT
GGTCCAAGCAAGAAGGTGACAAGAGATGCAATTTACTCCCTCCGTTTGATAACCTCTCAT
ATTATAAATCATTTTGACTTTTTTCTTAATCAAATTTCTTTAAGTTTCATCGAATATGTA
AAAAAAAATTAGTAAAAAAAAATAGCAATCCAAAACACCAAAATTTTTGATAATATGTTT
GTTTTGTGCTGAAAATATTGTTAAAATTGGTCAAATTAACTTAAAAAATTAAGTTTGATT
AAGAGAAAAGTCAGAACGATTTATAATACGAAACGGAGGGAGCGATACATATGCAGAGCA
GGGAGTGGTAATTATATTACTCGGTCATACGCTGCTTCCGGGGTGATGCTCCTGCTTCGG
ACGCTCAAGGATGCCGGCGTGCGAGAGCAAAGCCCAGAGATGGGTGATGAACTCGCCTCC
CTTGGCGAGCCGCTGGATGTGCTCTTTGACATTGTCTGACGGCGAGATGTAGAGCAACAT
CTCAGGCCAGAAGTCGGCCAGGACCTTCCAACGCATCTTCTCTGGCATCTCCTCCAGCTG
CTTCCCCAGCTTCAAGCCACTCTCGAATATGCTCTTAGTTGGCTCGCCCTCCGGTGGTGG
CTCATAGCCTTGCAGGGCCATGGCGTCGAACTCCTTTTTTCCACGTTCACGAAGAAACTG
CA

consensusID : consensus_9223#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 479
fasta sequence

                              [TACCAATGATACCAGTATCCTGATATTGACCCTTTTCTTTGATTATTCACACAATATATTATATATGAAACATTGAACGTCATAAGAGGTAAATAAACATTGAAGCACAAACAAATATACCACCGGAACAAGCCAACACAGGTATGCAGAAAATATTCCAGAATGCATGGCGATGGAACATCAGCATATATACATATATGCAATGGTCCAAGCAAGAAGGTGACAAGAGATGCAATTTACTCCCTCCGTTTGATAACCTCTCATATTATAAATCATTTTGACTTTTTTCTTAATCAAATTTCTTTAAGTTTCATCGAATATGTAAAAAAAAATTAGTAAAAAAAAATAGCAATCCAAAACACCAAAATTTTTGACAATATTTTCAGCACAAAACAAACATATTATCAAAATTGGTCAAATTAACTTAAAAAATTAAGTTTGATTAAGAGAAAAGTCAGAACGATTTATAATAAGGAACG]

[-] EMBL CB628268             [TACCAATGATACCAGTATCCTGATATTGACCCTTTTCTTTGATTATTCACACAATATATTATATATGAAACATTGAACGTCATAAGAGGTAAATAAACATTGAAGCACAAACAAATATACCACCGGAACAAGCCAACACAGGTATGCAGAAAATATTCCAGAATGCATGGCGATGGAACATCAGCATATATACATATATGCAATGGTCCAAGCAAGAAGGTGACAAGAGATGCAATTTACTCCCTCCGTTTGATAACCTCTCATATTATAAATCATTTTGACTTTTTTCTTAATCAAATTTCTTTAAGTTTCATCGAATATGTAAAAAAAAATTAGTAAAAAAAAATAGCAATCCAAAACACCAAAATTTTTGACAATATTTTCAGCACAAAACAAACATATTATCAAAATTGGTCAAATTAACTTAAAAAATTAAGTTTGATTAAGAGAAAAGTCAGAACGATTTATAATAAGGAACG]




>consensus_9223#1
TACCAATGATACCAGTATCCTGATATTGACCCTTTTCTTTGATTATTCACACAATATATT
ATATATGAAACATTGAACGTCATAAGAGGTAAATAAACATTGAAGCACAAACAAATATAC
CACCGGAACAAGCCAACACAGGTATGCAGAAAATATTCCAGAATGCATGGCGATGGAACA
TCAGCATATATACATATATGCAATGGTCCAAGCAAGAAGGTGACAAGAGATGCAATTTAC
TCCCTCCGTTTGATAACCTCTCATATTATAAATCATTTTGACTTTTTTCTTAATCAAATT
TCTTTAAGTTTCATCGAATATGTAAAAAAAAATTAGTAAAAAAAAATAGCAATCCAAAAC
ACCAAAATTTTTGACAATATTTTCAGCACAAAACAAACATATTATCAAAATTGGTCAAAT
TAACTTAAAAAATTAAGTTTGATTAAGAGAAAAGTCAGAACGATTTATAATAAGGAACG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_9223#0      ------------------------TCCTTTTTTTTTTTTTGATTATTCACACAATATATT 36
consensus_9223#1      TACCAATGATACCAGTATCCTGATATTGACCCTTTTCTTTGATTATTCACACAATATATT 60
                                                      **** ***********************

consensus_9223#0      ATATATGAAACATTGAACGTCATAAGAGGTAAATAAACATTGAAGCACAAACAAATATAC 96
consensus_9223#1      ATATATGAAACATTGAACGTCATAAGAGGTAAATAAACATTGAAGCACAAACAAATATAC 120
                      ************************************************************

consensus_9223#0      CACCGGAACAAGCCAACACAGGTATGCAGAAAATATTCCAGAATGCATGGCGATGGAACA 156
consensus_9223#1      CACCGGAACAAGCCAACACAGGTATGCAGAAAATATTCCAGAATGCATGGCGATGGAACA 180
                      ************************************************************

consensus_9223#0      TCAGCATATATACATATATGCAATGGTCCAAGCAAGAAGGTGACAAGAGATGCAATTTAC 216
consensus_9223#1      TCAGCATATATACATATATGCAATGGTCCAAGCAAGAAGGTGACAAGAGATGCAATTTAC 240
                      ************************************************************

consensus_9223#0      TCCCTCCGTTTGATAACCTCTCATATTATAAATCATTTTGACTTTTTTCTTAATCAAATT 276
consensus_9223#1      TCCCTCCGTTTGATAACCTCTCATATTATAAATCATTTTGACTTTTTTCTTAATCAAATT 300
                      ************************************************************

consensus_9223#0      TCTTTAAGTTTCATCGAATATGTAAAAAAAAATTAGTAAAAAAAAATAGCAATCCAAAAC 336
consensus_9223#1      TCTTTAAGTTTCATCGAATATGTAAAAAAAAATTAGTAAAAAAAAATAGCAATCCAAAAC 360
                      ************************************************************

consensus_9223#0      ACCAAAATTTTTGATAATATGTTTGTTTTGTGCTGAAAATATTGTTAAAATTGGTCAAAT 396
consensus_9223#1      ACCAAAATTTTTGACAATATTTTCAGCACAAAACAAACATATTATCAAAATTGGTCAAAT 420
                      ************** ***** **            ** ***** * **************

consensus_9223#0      TAACTTAAAAAATTAAGTTTGATTAAGAGAAAAGTCAGAACGATTTATAATACGAAACGG 456
consensus_9223#1      TAACTTAAAAAATTAAGTTTGATTAAGAGAAAAGTCAGAACGATTTATAATAAGGAACG- 479
                      **************************************************** * **** 

consensus_9223#0      AGGGAGCGATACATATGCAGAGCAGGGAGTGGTAATTATATTACTCGGTCATACGCTGCT 516
consensus_9223#1      ------------------------------------------------------------
                                                                                  

consensus_9223#0      TCCGGGGTGATGCTCCTGCTTCGGACGCTCAAGGATGCCGGCGTGCGAGAGCAAAGCCCA 576
consensus_9223#1      ------------------------------------------------------------
                                                                                  

consensus_9223#0      GAGATGGGTGATGAACTCGCCTCCCTTGGCGAGCCGCTGGATGTGCTCTTTGACATTGTC 636
consensus_9223#1      ------------------------------------------------------------
                                                                                  

consensus_9223#0      TGACGGCGAGATGTAGAGCAACATCTCAGGCCAGAAGTCGGCCAGGACCTTCCAACGCAT 696
consensus_9223#1      ------------------------------------------------------------
                                                                                  

consensus_9223#0      CTTCTCTGGCATCTCCTCCAGCTGCTTCCCCAGCTTCAAGCCACTCTCGAATATGCTCTT 756
consensus_9223#1      ------------------------------------------------------------
                                                                                  

consensus_9223#0      AGTTGGCTCGCCCTCCGGTGGTGGCTCATAGCCTTGCAGGGCCATGGCGTCGAACTCCTT 816
consensus_9223#1      ------------------------------------------------------------
                                                                                  

consensus_9223#0      TTTTCCACGTTCACGAAGAAACTGCA 842
consensus_9223#1      --------------------------