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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9272#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 731 fasta sequence
[CCCCCCGCCCCCAACCCCGACCTCCTCCCGTGCTCCGCGCTCCGATCCGCCGCCGCCGCCGCGCGCGCGCCGCCGGGGGAGTGCGCCGGCGTGTGGTGGTGGGTGTGTAAGGGTAGGTGGAGGGGTGGGTGATCCCTAATATCCTGTGCGACGACATCATCAATGAAGTTATACGCTTCCAAGCTGCTGCGCAATTATATTCCTTGTATGATAATAGCACCTGCGAATGTTCTGCCTCTTTCACTCATAAATCAACTCCTTTTGTTTTT-GTTAACTGTACACCGGTAACAGAAACACGATCATGTGACGAGATCATCAACCTCAGAATTGAATACAAAACTGGGAAATGTGGTTGTTATGTCCTTGAGGTACGGAAGAGTCATTATCTTCAATAAAGAGGGATTCCTTGAGACAAAATTCTCCCACTCTGTTCTATCTATTCTCCCATCCTGATTAGTATCAGCATCTGAAAACGTCTTGTCAAGGATTGTCTCAATAATCTCATCAGATAATCTCATTTCTGATTCACCTAGAAGAGCAATCAACATCTGTTTTACCTCCTTTCGTTCAATAAACCCAGTGTTGTCCATATCATATAGCTTGAAGGAAAAATCAATTTTCTCTTCCATTGGGATGTTTGGATGAAATACATTTAAAGCTCGAACAAAGTCACCAAAGTCGATGACCCCCCTTTTCTTCACATCAAAAAGGTCAAATATCCGATTAGCGAA]
[+] EMBL CB653877 [CCCCCCGCCCCCAACCCCGACCTCCTCCCGTGCTCCGCGCTCCGATCCGCCGCCGCCGCCGCGCGCGCGCCGCCGGGGGAGTGCGCCGGCGTGTGGTGGTGGGTGTGTAAGGGTAGGTGGAGGGGTGGGTGATCCCTAATATCCTGTGCGACGACATCATCAATGAAGTTATACGCTTCCAAGCTGCTGCGCAATTATATTCCTTGTATGATAATAGCACCTGCGAATGTTCTGCCTCTTTCACTCATAAATCAACTCCTTTTGTTTTT GTTAACTGTACACCGGTAACAGAAACACGATCATGTGACGAGATCATCAACCTCAGAATTGAATACAAAACTGGGAAATGTGGTTGTTATGTCCTTGAGGTACGGAAGAGTCATTATCTTCAATAAAGAGGGATTCCTTGAGACAAAATTCTCCCACTCTGTTCTATCTATTCTCCCATCCTGATTAGTATCAGCATCTGAAAACGTCTTGTCAAGGATTGTCTCAATAATCTCATCAGATAATCTCATTTCTGATTCACCTAGAAGAGCAATCAACATCTGTTTTACCTCCTTTCGTTCAATAAACCCAGTGTTGTCCATATCATATAGCTTGAAGGAAAAATCAATTTTCTCTTCCATTGGGATGTTTGGATGAAATACATTTAAAGCTCGAACAAAGTCACCAAAGTCGATGACCCCCCTTTTCTTCACATCAAAAAGGTCAAATATCCGATTAGCGAA]
[-] EMBL AA752507 [ TTTTGTTTTTMGTTAACTGTACACCGGTAACAGAYACACGATCATGTGACGAGATCATCAACCRCAGAATTGAATACAAAACTGGGAAATGTGGTTGTTATGTCCTTGAGGTACGGAAGAGTCATTATCTTCAATAAAGAGGGATTCCTTGAGACAAAATTCTCCCACTCTGTTCTATCTATTCTCCCATCCTGActcg ]
consensusID : consensus_9272#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 719 fasta sequence
[ATAGACAGAAGATTTTCCACTCATGTTTAGAAAACTAGGTAAATACTGTATATCTCTACGGGGACAAGGATAAGATGTTATAGTTGNCAAAGACNTGAAANCTGCAAACCCAANCATACAAATGTTACATTCTCTGGTTTCTGCATGCTTAGCATCCGAATCTAATCANCANCACTAAAACGACAACGCTAATATCCTGTGCGACGACATCATCAATGAAGTTATACGCTTCCAAGCTGCTGCGCAATTATATTCCTTGTATGATAATAGCACCTGCGAATGTTCTGCCTCTTTCACTCATAAATCAACTCCTTTTGTTTTTGTTAACTGTACACCGGTAACAGAAACACGATCATGTGACGAGATCATCAACCTCAGAATTGAATACAAAACTAGGAAATGTGGTTGTTATGTCCTTGAGGTACGGAAGAGTCATTATCTTCAATAAAGAGGGATTCCTTGAGACAAAATTCTCCCACTCTGTTCTATCTATTCTCCCATCCTGATTAGTATCAGCATCTGAAAACGTCTTGTCAAGGATTGTCTCAATAATCTCATCAGATAATCTCATTTCTGATTCACCTAGAAGAGCAATCAACATCTGTTTTACCTCCTTTCGTTCAATAAACCCAGTGTTGTCCATATCATATAGCTTGAAGGAAAAATCAATTTTCTCTTCCATTGGGATGTTTGGATGAAATACATTTAAAGCTCGAACA]
[-] EMBL CA766884 [ATAGACAGAAGATTTTCCACTCATGTTTAGAAAACTAGGTAAATACTGTATATCTCTACGGGGACAAGGATAAGATGTTATAGTTGNCAAAGACNTGAAANCTGCAAACCCAANCATACAAATGTTACATTCTCTGGTTTCTGCATGCTTAGCATCCGAATCTAATCANCANCACTAAAACGACAACGCTAATATCCTGTGCGACGACATCATCAATGAAGTTATACGCTTCCAAGCTGCTGCGCAATTATATTCCTTGTATGATAATAGCACCTGCGAATGTTCTGCCTCTTTCACTCATAAATCAACTCCTTTTGTTTTTGTTAACTGTACACCGGTAACAGAAACACGATCATGTGACGAGATCATCAACCTCAGAATTGAATACAAAACTAGGAAATGTGGTTGTTATGTCCTTGAGGTACGGAAGAGTCATTATCTTCAATAAAGAGGGATTCCTTGAGACAAAATTCTCCCACTCTGTTCTATCTATTCTCCCATCCTGATTAGTATCAGCATCTGAAAACGTCTTGTCAAGGATTGTCTCAATAATCTCATCAGATAATCTCATTTCTGATTCACCTAGAAGAGCAATCAACATCTGTTTTACCTCCTTTCGTTCAATAAACCCAGTGTTGTCCATATCATATAGCTTGAAGGAAAAATCAATTTTCTCTTCCATTGGGATGTTTGGATGAAATACATTTAAAGCTCGAACA]
consensusID : consensus_9272#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 629 fasta sequence
[TGGAAAACTTTGAAAAGACTGTATATCTCTACGGGGACAAGGATAAGATGTTATAGTTGGCAAAGACCTGAAAACTGCAAACCCAAACATACAAATGTTACATTCCGAATCTAATCAACAACACTAAAACAACAACGCTAATATCCTGTGCGACGA-CATCATCAATGAAGTTATACGCTTCCAAGCTGCTGCGCAATTATATTCCTTGTATGATAATAGCACCTGCGAATGTTCTGCCTCTTTCACTCATAAATCAACTCCTTTTGTTTTTGTTAACTGTACACCGGTAACAGAAACACGATCATGTGACGAGATCATCAACCTCAGAATTGAATACAAAACTGGGAAATGTGGTTGTTATGTCCTTGAGGTACGGAAGAGTCATTATCTTCAATAACGAGGGATTCCTTGAGACAAAATTCTCCCACTCTGCTCTATCTATTCTCCCATCCTGATTAGTATCAGCATCTGAAAACGTCTTGTCAAGGATTGTCTCAATAATCTCATCAGATAATCTCATTTCTGATTCACCTAGAAGAGCAATCCACATCTGTTTTACCTCCTTTCGTTCAATAAACCCAGTGTTGTCCATATCATATAGCTTGAAGGAAAAATCAATTTTCCCCTCC]
[+] EMBL CB653878 [TGGAAAACTTTGAAAAGACTGTATATCTCTACGGGGACAAGGATAAGATGTTATAGTTGGCAAAGACCTGAAAACTGCAAACCCAAACATACAAATGTTACATTCCGAATCTAATCAACAACACTAAAACAACAACGCTAATATCCTGTGCGACGA CATCATCAATGAAGTTATACGCTTCCAAGCTGCTGCGCAATTATATTCCTTGTATGATAATAGCACCTGCGAATGTTCTGCCTCTTTCACTCATAAATCAACTCCTTTTGTTTTTGTTAACTGTACACCGGTAACAGAAACACGATCATGTGACGAGATCATCAACCTCAGAATTGAATACAAAACTGGGAAATGTGGTTGTTATGTCCTTGAGGTACGGAAGAGTCATTATCTTCAATAACGAGGGATTCCTTGAGACAAAATTCTCCCACTCTGCTCTATCTATTCTCCCATCCTGATTAGTATCAGCATCTGAAAACGTCTTGTCAAGGATTGTCTCAATAATCTCATCAGATAATCTCATTTCTGATTCACCTAGAAGAGCAATCCACATCTGTTTTACCTCCTTTCGTTCAATAAACCCAGTGTTGTCCATATCATATAGCTTGAAGGAAAAATCAATTTTCCCCTCC]
[-] EMBL AA749548 [ CCTGTGCGACGAGCATCATCAATGAAGTTATACGCTTCCAAGCTG GCGCAATTATATTCCTTGTATGATAATAGCACCTGCGAATGTTCTGCCTCTTTCACTCATAAATCAACTCCTTTTGTTTTTGTTAACTGTACACCGGTAACAGAAACACGATCATGTGACGAGATCATCAACCTCAGAATTGAATACAAAACTGGGAAATGTGGTTGTTATGTCCTTGA ]
consensusID : consensus_9272#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 600 fasta sequence
[TTTTTTTTTTTTTCCAGATAGACAGAAAATTTTCCACTCATGTTTGGAAAACTAGGTAAATACTGTATATCTCTACGGGGACAAGGATAAAATGTTATAGTTGGCAAAGACCTGAAAACTGCAAACCCAAACATACAAATGTTACATTCTCTGGTTTCTGCATGCTTAGCATCCGAATCTAATCAACAACACTAAAACAACAACGCTAATATCCTGTGCGACGACTTCATCAATGAAGTTATACGCTTCCAAGCTGCTGCGCAATTATATTCCTTGTATGATAATAGCACCTGCGAATGTTCTGCCTCTTTCACTCATAAATCAACTCCTTTTGTTTTTGTTAACTGTACACCGGTAACAGAAACACGATCATGTGACGAGATCATCAACCTCAGAATTGAATACAAAACTAGGAAATGGTGGTTGTTATGTCCTTGAGGTACGGAAGAGTCATTATCTTCAATAAAGAGGGATTCCTTGAGACAAAATTCTCCCACTCTGTTCTATCTATTCTCCCATCCTGATTAGTATCAGCATCTGAAAACGTCTTGTCAAGGATTGTCTCAATAATCCCATCAGATAATCTCCCCCTTGTCTCGT]
[+] EMBL CA759191 [TTTTTTTTTTTTTCCAGATAGACAGAAAATTTTCCACTCATGTTTGGAAAACTAGGTAAATACTGTATATCTCTACGGGGACAAGGATAAAATGTTATAGTTGGCAAAGACCTGAAAACTGCAAACCCAAACATACAAATGTTACATTCTCTGGTTTCTGCATGCTTAGCATCCGAATCTAATCAACAACACTAAAACAACAACGCTAATATCCTGTGCGACGACTTCATCAATGAAGTTATACGCTTCCAAGCTGCTGCGCAATTATATTCCTTGTATGATAATAGCACCTGCGAATGTTCTGCCTCTTTCACTCATAAATCAACTCCTTTTGTTTTTGTTAACTGTACACCGGTAACAGAAACACGATCATGTGACGAGATCATCAACCTCAGAATTGAATACAAAACTAGGAAATGGTGGTTGTTATGTCCTTGAGGTACGGAAGAGTCATTATCTTCAATAAAGAGGGATTCCTTGAGACAAAATTCTCCCACTCTGTTCTATCTATTCTCCCATCCTGATTAGTATCAGCATCTGAAAACGTCTTGTCAAGGATTGTCTCAATAATCCCATCAGATAATCTCCCCCTTGTCTCGT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_9272#1 -----------------ATAGACAGAAGATTTTCCACTCATGTTTAGAAAACTAGGTAAA 43
consensus_9272#3 TTTTTTTTTTTTTCCAGATAGACAGAAAATTTTCCACTCATGTTTGGAAAACTAGGTAAA 60
consensus_9272#2 --------------------------------------------TGGAAAACTTTGAAAA 16
consensus_9272#0 ------------------------------------------------------------
consensus_9272#1 TACTGTATATCTCTACGGGGACAAGGATAAGATGTTATAGTTGNCAAAGACNTGAAANCT 103
consensus_9272#3 TACTGTATATCTCTACGGGGACAAGGATAAAATGTTATAGTTGGCAAAGACCTGAAAACT 120
consensus_9272#2 GACTGTATATCTCTACGGGGACAAGGATAAGATGTTATAGTTGGCAAAGACCTGAAAACT 76
consensus_9272#0 ----------CCCCCCGCCCCCAACCCCGACCTCCTCCCGTGCTCCGCGCTCCGA--TCC 48
* * ** *** * * * ** * * ** *
consensus_9272#1 GCAAACCCAANCATACAAATGTTACATTCTCTG-GTTTCTGCATGCT-TAGCATCCGAAT 161
consensus_9272#3 GCAAACCCAAACATACAAATGTTACATTCTCTG-GTTTCTGCATGCT-TAGCATCCGAAT 178
consensus_9272#2 GCAAACCCAAACATACAAATGTTACATTC--------------------------CGAAT 110
consensus_9272#0 GCCGCCGCCGCCGCGCGCGCGCCGCCGGGGGAGTGCGCCGGCGTGTGGTGGTGGGTGTGT 108
** * * * * * * * *
consensus_9272#1 CTAATCANCANCACTAAAACGACAACGCTAATATCCTGTGCGACGACATCATCAATGAAG 221
consensus_9272#3 CTAATCAACAACACTAAAACAACAACGCTAATATCCTGTGCGACGACTTCATCAATGAAG 238
consensus_9272#2 CTAATCAACAACACTAAAACAACAACGCTAATATCCTGTGCGACGACATCATCAATGAAG 170
consensus_9272#0 AAGGGTAGGTGGAGGGGTGGGTGATCCCTAATATCCTGTGCGACGACATCATCAATGAAG 168
* * * * ******************** ************
consensus_9272#1 TTATACGCTTCCAAGCTGCTGCGCAATTATATTCCTTGTATGATAATAGCACCTGCGAAT 281
consensus_9272#3 TTATACGCTTCCAAGCTGCTGCGCAATTATATTCCTTGTATGATAATAGCACCTGCGAAT 298
consensus_9272#2 TTATACGCTTCCAAGCTGCTGCGCAATTATATTCCTTGTATGATAATAGCACCTGCGAAT 230
consensus_9272#0 TTATACGCTTCCAAGCTGCTGCGCAATTATATTCCTTGTATGATAATAGCACCTGCGAAT 228
************************************************************
consensus_9272#1 GTTCTGCCTCTTTCACTCATAAATCAACTCCTTTTGTTTTTGTTAACTGTACACCGGTAA 341
consensus_9272#3 GTTCTGCCTCTTTCACTCATAAATCAACTCCTTTTGTTTTTGTTAACTGTACACCGGTAA 358
consensus_9272#2 GTTCTGCCTCTTTCACTCATAAATCAACTCCTTTTGTTTTTGTTAACTGTACACCGGTAA 290
consensus_9272#0 GTTCTGCCTCTTTCACTCATAAATCAACTCCTTTTGTTTTTGTTAACTGTACACCGGTAA 288
************************************************************
consensus_9272#1 CAGAAACACGATCATGTGACGAGATCATCAACCTCAGAATTGAATACAAAACTAGGAAAT 401
consensus_9272#3 CAGAAACACGATCATGTGACGAGATCATCAACCTCAGAATTGAATACAAAACTAGGAAAT 418
consensus_9272#2 CAGAAACACGATCATGTGACGAGATCATCAACCTCAGAATTGAATACAAAACTGGGAAAT 350
consensus_9272#0 CAGAAACACGATCATGTGACGAGATCATCAACCTCAGAATTGAATACAAAACTGGGAAAT 348
***************************************************** ******
consensus_9272#1 G-TGGTTGTTATGTCCTTGAGGTACGGAAGAGTCATTATCTTCAATAAAGAGGGATTCCT 460
consensus_9272#3 GGTGGTTGTTATGTCCTTGAGGTACGGAAGAGTCATTATCTTCAATAAAGAGGGATTCCT 478
consensus_9272#2 G-TGGTTGTTATGTCCTTGAGGTACGGAAGAGTCATTATCTTCAATAACGAGGGATTCCT 409
consensus_9272#0 G-TGGTTGTTATGTCCTTGAGGTACGGAAGAGTCATTATCTTCAATAAAGAGGGATTCCT 407
* ********************************************** ***********
consensus_9272#1 TGAGACAAAATTCTCCCACTCTGTTCTATCTATTCTCCCATCCTGATTAGTATCAGCATC 520
consensus_9272#3 TGAGACAAAATTCTCCCACTCTGTTCTATCTATTCTCCCATCCTGATTAGTATCAGCATC 538
consensus_9272#2 TGAGACAAAATTCTCCCACTCTGCTCTATCTATTCTCCCATCCTGATTAGTATCAGCATC 469
consensus_9272#0 TGAGACAAAATTCTCCCACTCTGTTCTATCTATTCTCCCATCCTGATTAGTATCAGCATC 467
*********************** ************************************
consensus_9272#1 TGAAAACGTCTTGTCAAGGATTGTCTCAATAATCTCATCAGATAATCTCATTTCTGATTC 580
consensus_9272#3 TGAAAACGTCTTGTCAAGGATTGTCTCAATAATCCCATCAGATAATCTCCCCCTTGTCTC 598
consensus_9272#2 TGAAAACGTCTTGTCAAGGATTGTCTCAATAATCTCATCAGATAATCTCATTTCTGATTC 529
consensus_9272#0 TGAAAACGTCTTGTCAAGGATTGTCTCAATAATCTCATCAGATAATCTCATTTCTGATTC 527
********************************** ************** ** **
consensus_9272#1 ACCTAGAAGAGCAATCAACATCTGTTTTACCTCCTTTCGTTCAATAAACCCAGTGTTGTC 640
consensus_9272#3 GT---------------------------------------------------------- 600
consensus_9272#2 ACCTAGAAGAGCAATCCACATCTGTTTTACCTCCTTTCGTTCAATAAACCCAGTGTTGTC 589
consensus_9272#0 ACCTAGAAGAGCAATCAACATCTGTTTTACCTCCTTTCGTTCAATAAACCCAGTGTTGTC 587
consensus_9272#1 CATATCATATAGCTTGAAGGAAAAATCAATTTTCTCTTCCATTGGGATGTTTGGATGAAA 700
consensus_9272#3 ------------------------------------------------------------
consensus_9272#2 CATATCATATAGCTTGAAGGAAAAATCAATTTTCCCCTCC-------------------- 629
consensus_9272#0 CATATCATATAGCTTGAAGGAAAAATCAATTTTCTCTTCCATTGGGATGTTTGGATGAAA 647
consensus_9272#1 TACATTTAAAGCTCGAACA----------------------------------------- 719
consensus_9272#3 ------------------------------------------------------------
consensus_9272#2 ------------------------------------------------------------
consensus_9272#0 TACATTTAAAGCTCGAACAAAGTCACCAAAGTCGATGACCCCCCTTTTCTTCACATCAAA 707
consensus_9272#1 ------------------------
consensus_9272#3 ------------------------
consensus_9272#2 ------------------------
consensus_9272#0 AAGGTCAAATATCCGATTAGCGAA 731
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||