cluster # 9286

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Oryza sativa
cluster # 9286 cluster # 9286 Sequences # 6 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_9286#0 length = 845 sequences # 5

consensus_9286#1 length = 383 sequences # 1

consensusID : consensus_9286#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 5
consensus length = 845
fasta sequence

                              [TTTTTTGCATAAGAGAGAGATTTAGCATTGCATGCCAACGAGCATCTGGGAGTCCTTTGAAAAATTGCTTGAATTTCTAG-TAGATCAG-ATTGCATCAAAGATGACAGTGATGATGTACAATGGGCTAGTATGCTAGTATCAGAAGGCCGCATTTTACTAGAGAATCCTACCATTCTATTCATCGATCTCCTTTACAGCATCCTTTGCAAGTCGTGTTACATATGTAGCAGCAATGGCTGTGAATAATAGCCCGATGCCCAGTGTCAGTAGCTGGCTGTTTCCTCCCAAACCGATCTCTGACTCATCTTGAATTATAGCTCGTCCAAATGCACCAGCACTGACATAGGCCCATGATCCTGGAAGCATTCCCAACCAACTTCCCAAGACATAAGGCAAGAACTTCACTGAAGTCAAGCCATACAAGTAGTTCCCAAGAGAGAAAGGTAATAGGGGACTAAGCCGCAGCAGAGTAACAACCTTAAATCCATTTTCACCTATTGCTTTGTCAATTGCCAGAAACTTCTTGTTTCCTTCAACCAATTTGAGAATTCGCTCTCTGGCAAAGTATCTAGCAATAAGAAAGGCCACTGCTGCAGCTAGTGTCCCGCTGATTGAGACAATAACTGTACCAGTAATACTACCAAACAATAGACCTGCTGACATTGTTAATGGTATCGCTGGAATCGCAAGGACCTCCAATCCTGCATACACTAGTACAAATAAAGCATATCCAGCAGGGCCATAACCATCAATGAACCCGGAGAACTGGGTGAGGAAGGTGTTGATCTGGTCCTTGTACACGTATCCCGCCGCCCCGAACCCCCCTATTTCTACTCTTCAGTCCA]

[+] EMBL CF292866             [TTTTTTGCATAAGAGAGAGATTTAGCATTGCATGCCAACGAGCATCTGGGAGTCCTTTGAAAAATTGCTTGAATTTCTAG TAGATCAG ATTGCATCAAAGATGACTGTGATGATGTACAATGGGCTAGTATGCTAGTATCAGAAGGCCGCTTTTTTCTAGAGAATCCTACCATTTTATTCATCGATCTCCTTTACAGCATCCTTTGCAAGTCGTGTTACATATGTAGCAGCAATGGCTGTGAATAATAGCCCGATACCCAGTGTCAGTAGCTGGCTGTTTCCTCCCAAACCGATCTCTGACTCATCTTGAATTATAGCTCGTCCAAATGCACCAGCACTGACATAGGCCCATGATCCTGGAAGCATTCCCAACCAACTTCCCAAGACATAAGGCAAGAACTTCACTGAAG                                                                                                                                                                                                                                                                                                                                                                                                                                                   ]
[+] EMBL CB682707             [                                      CGAGCATCTGGGAGTCCTTTGAAAAATTGCTTGAATTTCTAGCTAGATCAGCATTGCATCAAAGATGACAGTGATGATGTACAATGGGCTAATATGCTAGTATCAGAAGGCCGCATTTTACTAGAGAATCCTACCATTCTATTCATCGATCTCCTTTACAGCATCCTTTGCAAGTCGTGTTACATATGTAGCAGCAATGGCTGTGAATAATAGCCCGATGCCCAGTGTCAGTAGCTGGCTGTTTCCTCCCAAACCGATCTCTGACTCATCTTGAATTATAGCTCGTCCAAATGCACCAGCACTGACATAGGCCCATGATCCTGGAAGCATTCCCAACCAACTTCCCAAGACATAAGGCAAGAACTTCACTGAAGTCAAGCCATACAAGTAGTTCCCAAGAAAGAAAGGTAATAGGGGACTAAGCCGCAGCAGAGTAACAACCTTAAATCCATTTTCACCTATTGCTTTGTCAATTGCCAGAAACTTCTTGTTTCCTTCAACCAATTTGAGAATTCGCTCTCTGGCAAAGTATCTAGCAATAAGAAAGGCCACTGCTGCAGCTAGTGTCCCGCTGATTGAGACAATAACTGTACCAGTAATACTACCAAACAATAGACCTGCTGACATTGTTAATGGTATCGCTGGAATCGCAAGGACCTCCAATCCTGCATACACTAGTACAAATAAAGCATATCCAGCAGGGCCAT                                                                                                      ]
[-] EMBL AK063875             [                                                               ATTGCTTGAATTTCTAG TAGATCAG ATTGCATCAAAGATGACAGTGATGATGTACAATGGGCTAGTATGCTAGTATCAGAAGGCCGCATTTTACTAGAGAATCCTACCATTCTATTCATCGATCTCCTTTACAGCATCCTTTGCAAGTCGTGTTACATATGTAGCAGCAATGGCTGTGAATAATAGCCCGATGCCCAGTGTCAGTAGCTGGCTGTTTCCTCCCAAACCGATCTCTGACTCATCTTGAATTATAGCTCGTCCAAATGCACCAGCACTGACATAGGCCCATGATCCTGGAAGCATTCCCAACCAACTTCCCAAGACATAAGGCAAGAACTTCACTGAAGTCAAGCCATACAAGTAGTTCCCAAGAGAGAAAGGTAATAGGGGACTAAGCCGCAGCAGAGTAACAACCTTAAATCCATTTTCACCTATTGCTTTGTCAATTGCCAGAAACTTCTTGTTTCCTTCAACCAATTTGAGAATTCGCTCTCTGGCAAAGTATCTAGCAATAAGAAAGGCCACTGCTGCAGCTAGTGTCCCG                                                                                                                                                                                                                                              ]
[-] EMBL AA751087             [                                                                                                                                  atTGCATGTATCAGAAG   NNATTTTACTAGAGAATCCTACCATTATATTCATCGATCTCCTTTACAGCATCCTTTGCAAGTCGTGTTACATATGTAGCAGCAATGGCTGTAAATAATAGCCCGATGCCCAGTGTCAGTAGCTGGCTGTTTCCTCCCAAACCGATCTCTGACTCATCTTCAATTA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   ]
[-] EMBL CF292865             [                                                                                                                                                                                                               GCAAGTCGTGTTACATATGTAGCAGCAATGGCTGTGAATAATAGCCCGATACCCAGTGTCAGTAGCTGGCTGTTTCCTCCCAAACCGATCTCTGACTCATCTTGAATTATAGCTCGTCCAAATGCACCAGCACTGACATAGGCCCATGATCCTGGAAGCATTCCCAACCAACTTCCCAAGACATAAGGCAAGAACTTCACTGAAGTCAAGCCATACAAGTAGTTCCCAAGAGAGAAAGGTAATAGGGGACTAAGCCGCAGCAGAGTAACAACCTTAAATCCATTTTCACCTATTGCTTTGTCAATTGCCAGAAACTTCTTGTTTCCTTCAACCAATTTGAGAATTCGCTCTCTGGCAAAGTATCTAGCAATAAGAAAGGCCACTGCTGCAGCTAGTGTCCCGCTGATTGAGACAATAACTGTACCAGTAATACTACCAAACAATAGACCTGCTGACATTGTTAATGGTATCGCTGGAATCGCAAGGACCTCCAATCCTGCATACACTAGTACAAATAAAGCATATCCAGCAGGGCCATAACCATCAATGAACCCGGAGAACTGGGTGAGGAAGGTGTTGATCTGGTCCTTGTACACGTATCCCGCCGCCCCGAACCCCCCTATTTCTACTCTTCAGTCCA]




>consensus_9286#0
TTTTTTGCATAAGAGAGAGATTTAGCATTGCATGCCAACGAGCATCTGGGAGTCCTTTGA
AAAATTGCTTGAATTTCTAGTAGATCAGATTGCATCAAAGATGACAGTGATGATGTACAA
TGGGCTAGTATGCTAGTATCAGAAGGCCGCATTTTACTAGAGAATCCTACCATTCTATTC
ATCGATCTCCTTTACAGCATCCTTTGCAAGTCGTGTTACATATGTAGCAGCAATGGCTGT
GAATAATAGCCCGATGCCCAGTGTCAGTAGCTGGCTGTTTCCTCCCAAACCGATCTCTGA
CTCATCTTGAATTATAGCTCGTCCAAATGCACCAGCACTGACATAGGCCCATGATCCTGG
AAGCATTCCCAACCAACTTCCCAAGACATAAGGCAAGAACTTCACTGAAGTCAAGCCATA
CAAGTAGTTCCCAAGAGAGAAAGGTAATAGGGGACTAAGCCGCAGCAGAGTAACAACCTT
AAATCCATTTTCACCTATTGCTTTGTCAATTGCCAGAAACTTCTTGTTTCCTTCAACCAA
TTTGAGAATTCGCTCTCTGGCAAAGTATCTAGCAATAAGAAAGGCCACTGCTGCAGCTAG
TGTCCCGCTGATTGAGACAATAACTGTACCAGTAATACTACCAAACAATAGACCTGCTGA
CATTGTTAATGGTATCGCTGGAATCGCAAGGACCTCCAATCCTGCATACACTAGTACAAA
TAAAGCATATCCAGCAGGGCCATAACCATCAATGAACCCGGAGAACTGGGTGAGGAAGGT
GTTGATCTGGTCCTTGTACACGTATCCCGCCGCCCCGAACCCCCCTATTTCTACTCTTCA
GTCCA

consensusID : consensus_9286#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 383
fasta sequence

                              [GGACCTCCAATCTTGCATTCACTAGTACAAATCAAGCATATCCAGCAGGGCCATAACCATCAATGAACCCGGAGACCTGGGTGAGGAAGGTGTTGATCTGGTCCTTGTACACGTATCCCGCCGCCCCGAACCCCCCTACGACTCCAACCAGCAGCGCCCCGGCGAGGAGCGTCCCGGTGATGGCCCCCGCGCCGCCGTCTCCGTTATCCTCCGCCGCCTCCTCCTCCTCCTCCTCCTCCTGGTCAGCGGCGGGTCGCCGGTCCTTGCTGCTGCCGCCGCCCTGACCGCCGCCGCCGAGGCGGAAGGGGACGTTGGGCGAGGCCTTGCGGAGCGTGGCCTTGTCGGGGTCACGCAGCGACGAGAGCGGCGGGTGGAACGCCCGC]

[-] EMBL CB682706             [GGACCTCCAATCTTGCATTCACTAGTACAAATCAAGCATATCCAGCAGGGCCATAACCATCAATGAACCCGGAGACCTGGGTGAGGAAGGTGTTGATCTGGTCCTTGTACACGTATCCCGCCGCCCCGAACCCCCCTACGACTCCAACCAGCAGCGCCCCGGCGAGGAGCGTCCCGGTGATGGCCCCCGCGCCGCCGTCTCCGTTATCCTCCGCCGCCTCCTCCTCCTCCTCCTCCTCCTGGTCAGCGGCGGGTCGCCGGTCCTTGCTGCTGCCGCCGCCCTGACCGCCGCCGCCGAGGCGGAAGGGGACGTTGGGCGAGGCCTTGCGGAGCGTGGCCTTGTCGGGGTCACGCAGCGACGAGAGCGGCGGGTGGAACGCCCGC]




>consensus_9286#1
GGACCTCCAATCTTGCATTCACTAGTACAAATCAAGCATATCCAGCAGGGCCATAACCAT
CAATGAACCCGGAGACCTGGGTGAGGAAGGTGTTGATCTGGTCCTTGTACACGTATCCCG
CCGCCCCGAACCCCCCTACGACTCCAACCAGCAGCGCCCCGGCGAGGAGCGTCCCGGTGA
TGGCCCCCGCGCCGCCGTCTCCGTTATCCTCCGCCGCCTCCTCCTCCTCCTCCTCCTCCT
GGTCAGCGGCGGGTCGCCGGTCCTTGCTGCTGCCGCCGCCCTGACCGCCGCCGCCGAGGC
GGAAGGGGACGTTGGGCGAGGCCTTGCGGAGCGTGGCCTTGTCGGGGTCACGCAGCGACG
AGAGCGGCGGGTGGAACGCCCGC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_9286#0      TTTTTTGCATAAGAGAGAGATTTAGCATTGCATGCCAACGAGCATCTGGGAGTCCTTTGA 60
consensus_9286#1      --------------------------------------------------GGACCTCC-- 8
                                                                         * ***    

consensus_9286#0      AAAATTGCTTGAATTTCTAGTAGATCAGATTGCATCAAAGATGACAGTGATGATGTACAA 120
consensus_9286#1      AATCTTGCATTCACTAGTA-CAAATCAAGC-ATATCCAGCAGGGCCATAACCAT---CAA 63
                      **  **** *  * *  **  * ****      *** *  * * *  * *  **   ***

consensus_9286#0      TGGGCTAGTATGCTAGTATCAGAAGGCCGCATTTTACTAGAGAATCCTACCATTCTATTC 180
consensus_9286#1      TGAACCCGGAGACCTGGGTGAGGAAG--GTGTT---------GATCTGGTCCTTGTACAC 112
                      **  *  * *  *  *  * ** * *  *  **          ***    * ** **  *

consensus_9286#0      ATCGATCTCCTTTACAGCATCCTTTGCAAGTCGTGTTACATATGTAGCAGCAATGGCTGT 240
consensus_9286#1      GTATCCCGCCGCCCCGAACCCCCCTACGACTCCAACCAGCAGCGCCCCGGCGAGGAGCGT 172
                       *    * **    *     **  * * * **     *     *   * ** * *   **

consensus_9286#0      G--AATAATAGCCCG-ATGCC-CAGTGTCAGTAGCTGGCTGTTTCCTCCCAAACCGATCT 296
consensus_9286#1      CCCGGTGATGGCCCCCGCGCCGCCGTCTCCGTTATCCTCCGCCGCCTCC----TCCTCCT 228
                           * ** ****    *** * ** ** **      * *   *****     *   **

consensus_9286#0      CTGACTCATCTTGAATTATAGCTCGTCCAAATGCACCAGCACTGACATAGGCCCATGATC 356
consensus_9286#1      CCTCCTCCTCCTGGTCAGCGGCGGGT-------CGCCGGTCCTTGCTGCTGCCGCCGCCC 281
                      *   *** ** **       **  **       * ** *  **  *    ***   *  *

consensus_9286#0      CTGGAAGCATTCCCAACCAACTTCCCAAGACATAAGGCAAGAACTTCACTGAAGTCAAGC 416
consensus_9286#1      TGACCGCCGCCGCCGA--GGCGGAAGGGGACGTTGGGCGAGGCCTT--GCGGAGCGTGGC 337
                             *    ** *    *       *** *  *** **  ***    * **    **

consensus_9286#0      CATACAAGTAGTTCCCAAGAGAGAAAGGTAATAGGGGACTAAGCCGCAGCAGAGTAACAA 476
consensus_9286#1      CTTGTCGG-GGTCACGCAGCGACGAGAGCGGCGGGTGGAACGCCCGC------------- 383
                      * *    *  **  *  ** **  *  *     ** *      ****             

consensus_9286#0      CCTTAAATCCATTTTCACCTATTGCTTTGTCAATTGCCAGAAACTTCTTGTTTCCTTCAA 536
consensus_9286#1      ------------------------------------------------------------
                                                                                  

consensus_9286#0      CCAATTTGAGAATTCGCTCTCTGGCAAAGTATCTAGCAATAAGAAAGGCCACTGCTGCAG 596
consensus_9286#1      ------------------------------------------------------------
                                                                                  

consensus_9286#0      CTAGTGTCCCGCTGATTGAGACAATAACTGTACCAGTAATACTACCAAACAATAGACCTG 656
consensus_9286#1      ------------------------------------------------------------
                                                                                  

consensus_9286#0      CTGACATTGTTAATGGTATCGCTGGAATCGCAAGGACCTCCAATCCTGCATACACTAGTA 716
consensus_9286#1      ------------------------------------------------------------
                                                                                  

consensus_9286#0      CAAATAAAGCATATCCAGCAGGGCCATAACCATCAATGAACCCGGAGAACTGGGTGAGGA 776
consensus_9286#1      ------------------------------------------------------------
                                                                                  

consensus_9286#0      AGGTGTTGATCTGGTCCTTGTACACGTATCCCGCCGCCCCGAACCCCCCTATTTCTACTC 836
consensus_9286#1      ------------------------------------------------------------
                                                                                  

consensus_9286#0      TTCAGTCCA 845
consensus_9286#1      ---------