cluster # 9389

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Oryza sativa
cluster # 9389 cluster # 9389 Sequences # 6 consensus # 1
see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_9389#0 length = 875 sequences # 6
consensusID : consensus_9389#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 6
consensus length = 875
fasta sequence
                              [GACTACTCGTAGTAGTTGTTGCAAATCTGGTCAGAGGAGGAGGAGAGCATCCAAGCCTAGCTAGGATCGATCGACGATGTCTGATGTGGTGGCTATGGCGGGGCAGGCGTACATGCGGCAGCTCCAAGCCCACCCGCTGCGCACCAAGGCCATCACCTCCGGCGTTCTCGCCGGC-TGCAGCGACGCCATCGCCCAGAAGATCTCCGGCGTCCCCAACCTCCAGCGCAGGA-GGC-TCCTCCTCATCATGC-TCTAT-GGATTTGC-TTATGC-GGGACCGTTTGGCCATTTTC-TCCACAAGC-TGAT-GGAC-AGGTTTTTCAAGGGAAA-GAAAGGAAAAGAAAC-TACAGCCAAGAAGGTCTTAGTGGA-GCAACTAAC-TGCGTCACCATGGAACAATATGATGTTTATGATGTACTATGGTCTGGTGGTTGAAGGGAGACCTTTTAGTCAAGTGAAGAGCAAGCTCAAGAAAGACTACGCATCTGTCCAGTTGACAGCTTGGAAGTTCTGGCCAATTGTTAGTTGGATAAACTATGAATACATGCCGCTCCAGCTCCGAGTTCTTTTCCACAGCTTTGTTGCATCGTGCTGGGCAGTATTTCTGAACCTGAAAGCAGCAAGGTCCA-TTGCCACTAGTAAGAAGGCGTAAAACAGGTAGCACGGCATGCTGTTGCTGCCGACGTTCTACTGGTCAGG-ACTCACTAAGAAGAAGAAACCGGACTCAAACGGCTAAGATTAGATGCCGTCATTTTACTCTTTCAGTCTGCTTGTTGAACTAATTTGTACTACGTACTAACTTTATCCCTGATATAAAACGACGGTATGTTATTTATTTCTTCGATCAAAAAAAATAGTGTACTGACCCTAAAAAAAAAAAAAAAAAA]

[+] EMBL AK100851             [GACTACTCGTAGTAGTTGTTGCAAATCTGGTCAGAGGAGGAGGAGAGCATCCAAGCCTAGCTAGGATCGATCGACGATGTCTGATGTGGTGGCTATGGCGGGGCAGGCGTACATGCGGCAGCTCCAAGCCCACCCGCTGCGCACCAAGGCCATCACCTCCGGCGTTCTCGCCGGC TGCAGCGACGCCATCGCCCAGAAGATCTCCGGCGTCCCCAACCTCCAGCGCAGGA GGC TCCTCCTCATCATGC TCTAT GGATTTGC TTATGC GGGACCGTTTGGCCATTTTC TCCACAAGC TGAT GGAC AGGTTTTTCAAGGGAAA GAAAGGAAAAGAAAC TACAGCCAAGAAGGTCTTAGTGGA GCAACTAAC TGCGTCACCATGGAACAATATGATGTTTATGATGTACTATGGTCTGGTGGTTGAAGGGAGACCTTTTAGTCAAGTGAAGAGCAAGCTCAAGAAAGACTACGCATCTGTCCAGTTGACAGCTTGGAAGTTCTGGCCAATTGTTAGTTGGATAAACTATGAATACATGCCGCTCCAGCTCCGAGTTCTTTTCCACAGCTTTGTTGCATCGTGCTGGGCAGTATTTCTGAACCTGAAAGCAGCAAGGTCCA TTGCCACTAGTAAGAAGGCGTAAAACAGGTAGCACGGCATGCTGTTGCTGCCGACGTTCTACTGGTCAGG ACTCACTAAGAAGAAGAAACCGGACTCAAACGGCTAAGATTAGATGCCGTCATTTTACTCTTTCAGTCTGCTTGTTGAACTAATTTGTACTACGTACTAACTTTATCCCTGATATAAAACGACG                                                                ]
[+] EMBL OSS11322A            [        GTAGTAGTTGTTGCAAATCTGGTCAGAGGAGGAGGAGAGCATCCAAGCCTAGCTAGGATCGATCGACGATGTCTGATGTGGTGGCTATGGCGGGGCAGGCGTACATGCGGCAG TCCAAGCCCACCCGCTGCGCACCAAGGCCATCACCTCCGGCGTTCTCG CGNCTTGCAGCGACGCCATCGCCCAGAAGATCTCCGGCGTCCCCAACCTCCAGCGCAGGAGGGCTTCCTCCTCATCATGCTTCTATGGGATTTGCTTTATGCGGGGACCGTTTGGCCATTTTCTTCCACAAGCTTGATGGGACAAGGTTTTTCAAGGGAAAGGAAGGGAAAAGGAACTTACAGGCAAG AGGTCTTAGTGGAGGCAACTNACTTGCGTCAACATTGGACAATATG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      ]
[+] EMBL CF282001             [                                  AGGAGGAGGAGAGCATCCAAGCCTAGCTAGGATCGATCGACGATGTCTGATGTGGTGGCTATGGCGGGGCAGGCGTACATGCGGCAGCTCCAAGCCCACCCGCTGCGCACCAAGGCCATCACCTCCGGCGTTCTCGCCGGC TGCAGCGACGCCATCGCCCAGAAGATCTCCGGCGTCCCCAACCTCCAGCGCAGGA GGC TCCTCCTCATCATGC TCTAT GGATTTGC TTATGC GGGACCGTTTGGCCATTTTC TCCACAAGC TGAT GGAC AGGTTTTTCAAGGGAAA GAAAGGAAAAGAAAC TACAGCCAAGAAGGTCTTAGTGGA GCAACTAAC TGCGTCACCATGGAACAATATGATGTTTATGATGTACTATGGTCTGGTGGTTGAAGGGAGACCTTTTAGTCAAGTGAAGAGCAAGCTCAAGAAAGACTACGCATCTGTCCAGTTGACAGCTTGGAAGTTCTGGCCAATTGTTAGTTGGATAAACTATGAATACATGCCGCTCCAGCTCCGAGTTCTTTTCCACAGCTTTGTTGCATCGTGCTGGGCAGTATTTCTGAACCTGAAAGCAGCAAGGTCCA TTGCCACTAGTAAGAAGGCGTAAAACAGGTAGCACGGCATGCTGTTGCTGCCGACGTTCTACTGGTCA                                                                                                                                                                                               ]
[+] EMBL CA753296             [                                                                GATCGATCGACGATGTCTGATGTGGTGGCTATGGCGGGGCAGGCGTACATGCGGCAGCTCCAAGCCCACCCGCTGCGCACCAAGGCCATCACCTCCGGCGTTCTCGCCGGC TGCAGCGACGCCATCGCCCAGAAGATCTCCGGCGTCCCCAACCTCCAGCGCAGGA GGC TCCTCCTCATCATGC TCTAT GGATTTGC TTATGC GGGACCGTTTGGCCATTTTC TCCACAAGC TGAT GGAC AGGTTTTTCAAGGGAAA GAAAGGAAAAGAAAC TACAGCCAAGAAGGTCTTAGTGGA GCAACTAAC TGCGTCACCATGGAACAATATGATGTTTATGATGTACTATGGTCTGGTGGTTGAAGGGAGACCTTTTAGTCAAGTGAAGAGCAAGCTCAAGAAAGACTACGCATCTGTCCAGTTGACAGCTTGGAAGTTCTGGCCAATTGTTAGTTGGATAAACTATGAATACATGCCGCTCCAGCTCCGAGTTCTTTTCCACAGCTTTGTCGCATCGTGCTGGGCAGTATTTCTGAACCTGAAAGCA CCAGGTCCA  TGCCACTAGTAAGAAGGCGTAAAAC GGTAGCACNGCATGCCG TGCTGCCGACG TCTACTGNT AGGCACT   TTAGAANAAG ANCTCGACTC AACCGCTAA ATT                                                                                                                                                   ]
[-] EMBL CF314601             [                                                                                                                                                                                                                                                                                                                                                                                         ACTAAC TGCGTCACCATGGAACAATATGATGTTTATGATGTACTATGGTCTGGTGGTTGAAGGGAGACCTTTTAGTCAAGTGAAGAGCAAGCTCAAGAAAGACTACGCATCTGTCCAGTTGACAGCTTGGAAGTTCTGGCCAATTGTTAGTTGGATAAACTATGAATACATGCCGCTCCAGCTCCGAGTTCTTTTCCACAGCTTTGTTGCATCGTGCTGGGCAGTATTTCTGAACCTGAAAGCAGCAAGGTCCA TTGCCACTAGTAAGAAGGCGTAAAACAGGTAGCACGGCATGCTGTTGCTGCCGACGTTCTACTGGTCAGG ACTCACTAAGAAGAAGAAACCGGACTCAAACGGCTAAGATTAGATGCCGTCATTTTACTCTTTCAGTCTGCTTGTTGAACTAATTTGTACTACGTACTAACTTTATCCCTGATATAAAACGACGGTATGTTATTTATTTCTTCGATCAAAAAAA                                  ]
[+] EMBL AU032605             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        ctcCCAGCTCCGAGTTCTTTTCCACAGCTTTTTTGCATCGTGCTGGGCAGTATTTCTGANCCTGAAAGCAGCAAGGTCCATTTGCCACTANTAAGAAGGCGTAAAACAGGTAGCACGGCATGCTGTTGCTGCCGACGTTCTACTGGTCAGG ACTCACTAAGAAGAAGAAACCGGACTCAAACGGCTAAGATTAGATGCCGTCATTTTACTCTTTCAGTCTGCTTGTTGAACTAATTTGTACTACGTACTAACTTTATCCCTGATATAAAACGAC GTATGTTATTTATTTCTTCGATCAACATATATAGTGTACTGACCCTAAAAAAAAAAAAAAAAAA]




>consensus_9389#0
GACTACTCGTAGTAGTTGTTGCAAATCTGGTCAGAGGAGGAGGAGAGCATCCAAGCCTAG
CTAGGATCGATCGACGATGTCTGATGTGGTGGCTATGGCGGGGCAGGCGTACATGCGGCA
GCTCCAAGCCCACCCGCTGCGCACCAAGGCCATCACCTCCGGCGTTCTCGCCGGCTGCAG
CGACGCCATCGCCCAGAAGATCTCCGGCGTCCCCAACCTCCAGCGCAGGAGGCTCCTCCT
CATCATGCTCTATGGATTTGCTTATGCGGGACCGTTTGGCCATTTTCTCCACAAGCTGAT
GGACAGGTTTTTCAAGGGAAAGAAAGGAAAAGAAACTACAGCCAAGAAGGTCTTAGTGGA
GCAACTAACTGCGTCACCATGGAACAATATGATGTTTATGATGTACTATGGTCTGGTGGT
TGAAGGGAGACCTTTTAGTCAAGTGAAGAGCAAGCTCAAGAAAGACTACGCATCTGTCCA
GTTGACAGCTTGGAAGTTCTGGCCAATTGTTAGTTGGATAAACTATGAATACATGCCGCT
CCAGCTCCGAGTTCTTTTCCACAGCTTTGTTGCATCGTGCTGGGCAGTATTTCTGAACCT
GAAAGCAGCAAGGTCCATTGCCACTAGTAAGAAGGCGTAAAACAGGTAGCACGGCATGCT
GTTGCTGCCGACGTTCTACTGGTCAGGACTCACTAAGAAGAAGAAACCGGACTCAAACGG
CTAAGATTAGATGCCGTCATTTTACTCTTTCAGTCTGCTTGTTGAACTAATTTGTACTAC
GTACTAACTTTATCCCTGATATAAAACGACGGTATGTTATTTATTTCTTCGATCAAAAAA
AATAGTGTACTGACCCTAAAAAAAAAAAAAAAAAA
clustalw multiple alignements is not computed in this case