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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_949#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 2334 fasta sequence
[GGAGTTGCTTTATGATGCAGAAGACGTTATGGATGAGCTTGACTACTACCGGCTACAACAACAGATTGAAAAAGGCGAAGGTTGCAGTGCTGCTGCTGCTAATTATCCTGAGGCAAGCTATGCGTCTTCATCAACTCCATTTTCTCCTTATCAACTACTACACAGTGCCAGGAGCCAAATTACTGTTTGGGCCTCATATTGTAGAAAAAGGAAACAAGGAGAGGGAGACACAACTCATTGCACCATGCTGCCTCTTGAGATCAGACTTGATATTTCTAAGAGGATCAATGGAATAGTGAACGATTTACAGAAAGCTGGCAATTCTGTGAGGGGGATTCTTCTACCAGGTGTCTCACACCCAGCTTTAACATCAAATCAGAGGCAAAGCAAGATCAGGAACACACGCTTGACAACTTCTGTTCCTATTGAACTTAAGGTGTACGGGAGGGATGCGGACAGGGACAGGATAATAGAGATATTATTAAATGAGGAATCTAGTGATCTACGTGTTTTGCCAATAGTTGGCATTGGTGGTATTGGGAAGACAACACTCACTAGATTTATATACAGTGATCGAAGAATTATTGATCATTTTGATTTGCGAATTTGGATCTGTGTATCCACTTACTTCAATGAAGTGGACATAACACGTGAGATCTTAGAGCATATATTTGAAGATAAACAAGATAAACAGGAATTCAAAGATGTTAGCAATTTCAATGTACTACAGGAGATTCTTTTGAAGAATATTAGAGATAAAAGATTTCTTCTCGTATTGGATGATATGTGGAAGGAAAAAGACATGAGTGGATGGGATAAGCTGTTAGCTCCATTGAAACATAGTCAAGTAACCGGCTGTATGGTGCTAGCAACAACCCGAAAAAACTCAGTTGCAGAAATGATAGGAACAGTGAATGCATTCCAAATCAGTGGTCTGGATGAAAAGGAGTTTTGGCAGTTCTTCAAAGCATGTGCGTTTGGCAAGGAAAACTACGAGGGTGATCCTAGTTTGCAATCCATTGGGCGACAAATTGCTAAAGCACTAAAGGGCTGCCCACTAGCAGCACGAAGTGTTGGTGCACTTTTGAACAGAAATGTTAGCTATGAACATTGGAGGACAATTCGAGACAAATGGAAATCTCTTCAAATAAAAGATGATGATTTTATACCCATCCTGAAACTTAGCTATGATTATCTACCTTCTCACCTGCAGCGCTGTTTCTCCTACTGTTCTTTATTCCCAGAGGATCACCCGTTTAGTGCAGCAACTTTGGTTCAGGTTTGGATATCTCAAAATTTTGTGCAATGTGAAGATATAGGCAAGGGGTTGGAGGAGACAGGGTTGCAATAGCTAGGTAGTTTGGTGGATTTTGGATTTTTCCAAAAGGTTGACCGGCACTATGTTATGCATGATCTTATGCATGATTTAGCACAACAGGTTTCAGCAAAAGAATGTTATACGGTAAGAGGGTTGCAATCTAGCACAATTCGACAAGGTATTCGTCATTTGTCTATCATAACCACTGGTGATGATAATGATAAAAATACCAATTTTCCCACTGAGAAATATGAGATATTACAAAAGATTAGGCCTTTGCAAAAGTTGAGGAGCTTGATGCTTTTTGGAAGCAGCAGTGTATATCTATTGAAGTCCATACAAACTGTATGCAAGGAAGCCAAATGTTTACGGTTGTTAAGAGTTTGCGTCTTGAACGCTGACATCAGTGCTATACCCATAAACACATAATGCTCTTAACAGACTACACTTGAGGAGGTATGCGGTTGGTGCAATTTGCCTTAACCCTCACCCTCCTCTTGCTTAAAGTAATCATTTGAATTTCCCTGCAGAGTGCAGACTGCATTCAAATTAACAAGATCTTGCACATTGTTGTTGTCTGTGCTGCACTTGCTTCCTTCAGCACAGATATACTTCTGGAGCCAATGTATACGGTTATATGGCCTTACAACAAAGACCACTATGTACGCATCAACTCATGACTGGTGACAAATGTTAACCCTTTGATTTCTGGAGAAAACTGCATAGAGTTCAATTGTGAATTTGTGACTGGTATAAAAAAAATTGTTTGCTTTGAGATCTATGCAGTTAATTTGGGTGAATTAATTAGTAAGCTTTTAGCCTTGGTTATTGTCATGGTGTTTGAGACAATCGTCCGTGTTGATGGTTATGTTGGACGTCATGTACAGACGAAAGCCAGTGTAATTGATTAGGGTAGCTAAAAACTGGAATTGATAGTGTTTACCATGTACTAGTATACTAGGAATTAAGTCTTGTGTTTTGAGTTTAATAATTCGGTTTGAATCTTAGCATCGGGC]
[+] EMBL AK106341 [GGAGTTGCTTTATGATGCAGAAGACGTTATGGATGAGCTTGACTACTACCGGCTACAACAACAGATTGAAAAAGGCGAAGGTTGCAGTGCTGCTGCTGCTAATTATCCTGAGGCAAGCTATGCGTCTTCATCAACTCCATTTTCTCCTTATCAACTACTACACAGTGCCAGGAGCCAAATTACTGTTTGGGCCTCATATTGTAGAAAAAGGAAACAAGGAGAGGGAGACACAACTCATTGCACCATGCTGCCTCTTGAGATCAGACTTGATATTTCTAAGAGGATCAATGGAATAGTGAACGATTTACAGAAAGCTGGCAATTCTGTGAGGGGGATTCTTCTACCAGGTGTCTCACACCCAGCTTTAACATCAAATCAGAGGCAAAGCAAGATCAGGAACACACGCTTGACAACTTCTGTTCCTATTGAACTTAAGGTGTACGGGAGGGATGCGGACAGGGACAGGATAATAGAGATATTATTAAATGAGGAATCTAGTGATCTACGTGTTTTGCCAATAGTTGGCATTGGTGGTATTGGGAAGACAACACTCACTAGATTTATATACAGTGATCGAAGAATTATTGATCATTTTGATTTGCGAATTTGGATCTGTGTATCCACTTACTTCAATGAAGTGGACATAACACGTGAGATCTTAGAGCATATATTTGAAGATAAACAAGATAAACAGGAATTCAAAGATGTTAGCAATTTCAATGTACTACAGGAGATTCTTTTGAAGAATATTAGAGATAAAAGATTTCTTCTCGTATTGGATGATATGTGGAAGGAAAAAGACATGAGTGGATGGGATAAGCTGTTAGCTCCATTGAAACATAGTCAAGTAACCGGCTGTATGGTGCTAGCAACAACCCGAAAAAACTCAGTTGCAGAAATGATAGGAACAGTGAATGCATTCCAAATCAGTGGTCTGGATGAAAAGGAGTTTTGGCAGTTCTTCAAAGCATGTGCGTTTGGCAAGGAAAACTACGAGGGTGATCCTAGTTTGCAATCCATTGGGCGACAAATTGCTAAAGCACTAAAGGGCTGCCCACTAGCAGCACGAAGTGTTGGTGCACTTTTGAACAGAAATGTTAGCTATGAACATTGGAGGACAATTCGAGACAAATGGAAATCTCTTCAAATAAAAGATGATGATTTTATACCCATCCTGAAACTTAGCTATGATTATCTACCTTCTCACCTGCAGCGCTGTTTCTCCTACTGTTCTTTATTCCCAGAGGATCACCCGTTTAGTGCAGCAACTTTGGTTCAGGTTTGGATATCTCAAAATTTTGTGCAATGTGAAGATATAGGCAAGGGGTTGGAGGAGACAGGGTTGCAATAGCTAGGTAGTTTGGTGGATTTTGGATTTTTCCAAAAGGTTGACCGGCACTATGTTATGCATGATCTTATGCATGATTTAGCACAACAGGTTTCAGCAAAAGAATGTTATACGGTAAGAGGGTTGCAATCTAGCACAATTCGACAAGGTATTCGTCATTTGTCTATCATAACCACTGGTGATGATAATGATAAAAATACCAATTTTCCCACTGAGAAATATGAGATATTACAAAAGATTAGGCCTTTGCAAAAGTTGAGGAGCTTGATGCTTTTTGGAAGCAGCAGTGTATATCTATTGAAGTCCATACAAACTGTATGCAAGGAAGCCAAATGTTTACGGTTGTTAAGAGTTTGCGTCTTGAACGCTGACATCAGTGCTATACCCATAAACACATAATGCTCTTAACAGACTACACTTGAGGAGGTATGCGGTTGGTGCAATTTGCCTTAACCCTCACCCTCCTCTTGCTTAAAGTAATCATTTGAATTTCCCTGCAGAGTGCAGACTGCATTCAAATTAACAAGATCTTGCACATTGTTGTTGTCTGTGCTGCACTTGCTTCCTTCAGCACAGATATACTTCTGGAGCCAATGTATACGGTTATATGGCCTTACAACAAAGACCACTATGTACGCATCAACTCATGACTGGTGACAAATGTTAACCCTTTGATTTCTGGAGAAAACTGCATAGAGTTCAATTGTGAATTTGTGACTGGTATAAAAAAAATTGTTTGCTTTGAGATCTATGCAGTTAATTTGGGTGAATTAATTAGTAAGCTTTTAGCCTTGGTTATTGTCATGGTGTTTGAGACAATCGTCCGTGTTGATGGTTATGTTGGACGTCATGTACAGACGAAAGCCAGTGTAATTGATTAGGGTAGCTAAAAACTGGAATTGATAGTGTTTACCATGTACTAGTATACTAGGAATTAAGTCTTGTGTTTTGAGTTTAATAATTCGGTTTGAATCTTAGCATCGGGC]
consensusID : consensus_949#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 634 fasta sequence
[TTTCATCTTCTGCTTATCATCTNATATGCNGTGCNAGACANAAAATTACTTGCTGNATCTCATCTGGCNGANAAAGGAAGCGNGNNGNGGTNGAGCCAACTGNTAGCNCCNTGCTGCCTCATGATNTCAAACGTGACATTTCTAAGAGGATCAATAGAATNGTGAACAATTTGCNGAAAACTGGCAATTCTGTTNGTGGGGTTCTTCAGCTAGAGATCCCATGCCGAGGTTTGACATCAAATCAGAGGCACAGAATGGCCNGGAACACACGCCTGACAACTTCTGTTCCTATTGAACCCAAGGTGTATGGGNGAGATGCAGATAAGGACAGGATAATAGAGATGTTAATAAATGAGGGATCTAGTGATCTCCTTGTCATACCAATAGTTGGCATTGGTGGTATTGGAAAGACAACACTTGCTAGATTTGTATACCGAGATCAAAGGATTATTGATCATTTTGATTTGCAAATATGGATTTGTGTATCCACTAACTTCAATGAAGTAAGGTAACGCTTGAGATCTTAGAGCATGTATGTAAGGATAGACAAGAGTACAGAGATGTTAGCAATTTCAATGTACTACAGGAGATTCTTTTGAAGAATATTAGAGATAAAAGATTTCTTATCAAAAAA]
[+] EMBL AU030779 [TTTCATCTTCTGCTTATCATCTNATATGCNGTGCNAGACANAAAATTACTTGCTGNATCTCATCTGGCNGANAAAGGAAGCGNGNNGNGGTNGAGCCAACTGNTAGCNCCNTGCTGCCTCATGATNTCAAACGTGACATTTCTAAGAGGATCAATAGAATNGTGAACAATTTGCNGAAAACTGGCAATTCTGTTNGTGGGGTTCTTCAGCTAGAGATCCCATGCCGAGGTTTGACATCAAATCAGAGGCACAGAATGGCCNGGAACACACGCCTGACAACTTCTGTTCCTATTGAACCCAAGGTGTATGGGNGAGATGCAGATAAGGACAGGATAATAGAGATGTTAATAAATGAGGGATCTAGTGATCTCCTTGTCATACCAATAGTTGGCATTGGTGGTATTGGAAAGACAACACTTGCTAGATTTGTATACCGAGATCAAAGGATTATTGATCATTTTGATTTGCAAATATGGATTTGTGTATCCACTAACTTCAATGAAGTAAGGTAACGCTTGAGATCTTAGAGCATGTATGTAAGGATAGACAAGAGTACAGAGATGTTAGCAATTTCAATGTACTACAGGAGATTCTTTTGAAGAATATTAGAGATAAAAGATTTCTTATCAAAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_949#0 GGAGTTGCTTTATGATGCAGAAGACGTTATGGATGAGCTTGACTACTACCGGCTACAACA 60
consensus_949#1 ------------------------------------------------------------
consensus_949#0 ACAGATTGAAAAAGGCGAAGGTTGCAGTGCTGCTGCTGCTAATTATCCTGAGGCAAGCTA 120
consensus_949#1 ------------------------------------------------------------
consensus_949#0 TGCGTCTTCATCAACTCCATTTTCTCCTTATCAACTACTACACAGTGCCAGGAGCCAAAT 180
consensus_949#1 --------------TTTCATCTTCTGCTTATCATCTNATATGCNGTGCNAGACANAAAAT 46
* *** **** ******* ** ** * **** ** ****
consensus_949#0 TACTGTTTGGGCCTCATATTGTAGAAAAAGGAAACAAGGAGAGGGAGACACAACTCATTG 240
consensus_949#1 TACTTGCTGNATCTCATCTGGCNGANAAAGGAAGCGNGNNGNGGTNGAGCCAACTGNTAG 106
**** ** ***** * * ** ******* * * * ** ** ***** * *
consensus_949#0 CACCATGCTGCCTCTTGAGATCAGACTTGATATTTCTAAGAGGATCAATGGAATAGTGAA 300
consensus_949#1 CNCCNTGCTGCCTCATGATNTCAAACGTGACATTTCTAAGAGGATCAATAGAATNGTGAA 166
* ** ********* *** *** ** *** ****************** **** *****
consensus_949#0 CGATTTACAGAAAGCTGGCAATTCTGTGAGGGGGATTCTTCTACCAGGTGTCTCACACCC 360
consensus_949#1 CAATTTGCNGAAAACTGGCAATTCTGTTNGTGGGGTTCTTCAGCTAGAGATCCCATGCCG 226
* **** * **** ************* * *** ****** * ** ** ** **
consensus_949#0 AGCTTTAACATCAAATCAGAGGCAAAGCAAGATCAGGAACACACGCTTGACAACTTCTGT 420
consensus_949#1 AGGTTTGACATCAAATCAGAGGCACAGAATGGCCNGGAACACACGCCTGACAACTTCTGT 286
** *** ***************** ** * * * *********** *************
consensus_949#0 TCCTATTGAACTTAAGGTGTACGGGAGGGATGCGGACAGGGACAGGATAATAGAGATATT 480
consensus_949#1 TCCTATTGAACCCAAGGTGTATGGGNGAGATGCAGATAAGGACAGGATAATAGAGATGTT 346
*********** ******** *** * ***** ** * ****************** **
consensus_949#0 ATTAAATGAGGAATCTAGTGATCTACGTGTTTTGCCAATAGTTGGCATTGGTGGTATTGG 540
consensus_949#1 AATAAATGAGGGATCTAGTGATCTCCTTGTCATACCAATAGTTGGCATTGGTGGTATTGG 406
* ********* ************ * *** * **************************
consensus_949#0 GAAGACAACACTCACTAGATTTATATACAGTGATCGAAGAATTATTGATCATTTTGATTT 600
consensus_949#1 AAAGACAACACTTGCTAGATTTGTATACCGAGATCAAAGGATTATTGATCATTTTGATTT 466
*********** ******** ***** * **** *** ********************
consensus_949#0 GCGAATTTGGATCTGTGTATCCACTTACTTCAATGAAGTGGACATAACACGTGAGATCTT 660
consensus_949#1 GCAAATATGGATTTGTGTATCCACTAACTTCAATGAAGTA-AGGTAACGCTTGAGATCTT 525
** *** ***** ************ ************* * **** * *********
consensus_949#0 AGAGCATATATTTGAAGATAAACAAGATAAACAGGAATTCAAAGATGTTAGCAATTTCAA 720
consensus_949#1 AGAGCATGTATGTAAGGATAGACAAGA---------GTACAGAGATGTTAGCAATTTCAA 576
******* *** * * **** ****** * ** ******************
consensus_949#0 TGTACTACAGGAGATTCTTTTGAAGAATATTAGAGATAAAAGATTTCTTCTCGTATTGGA 780
consensus_949#1 TGTACTACAGGAGATTCTTTTGAAGAATATTAGAGATAAAAGATTTCTTATCAAAAAA-- 634
************************************************* ** *
consensus_949#0 TGATATGTGGAAGGAAAAAGACATGAGTGGATGGGATAAGCTGTTAGCTCCATTGAAACA 840
consensus_949#1 ------------------------------------------------------------
consensus_949#0 TAGTCAAGTAACCGGCTGTATGGTGCTAGCAACAACCCGAAAAAACTCAGTTGCAGAAAT 900
consensus_949#1 ------------------------------------------------------------
consensus_949#0 GATAGGAACAGTGAATGCATTCCAAATCAGTGGTCTGGATGAAAAGGAGTTTTGGCAGTT 960
consensus_949#1 ------------------------------------------------------------
consensus_949#0 CTTCAAAGCATGTGCGTTTGGCAAGGAAAACTACGAGGGTGATCCTAGTTTGCAATCCAT 1020
consensus_949#1 ------------------------------------------------------------
consensus_949#0 TGGGCGACAAATTGCTAAAGCACTAAAGGGCTGCCCACTAGCAGCACGAAGTGTTGGTGC 1080
consensus_949#1 ------------------------------------------------------------
consensus_949#0 ACTTTTGAACAGAAATGTTAGCTATGAACATTGGAGGACAATTCGAGACAAATGGAAATC 1140
consensus_949#1 ------------------------------------------------------------
consensus_949#0 TCTTCAAATAAAAGATGATGATTTTATACCCATCCTGAAACTTAGCTATGATTATCTACC 1200
consensus_949#1 ------------------------------------------------------------
consensus_949#0 TTCTCACCTGCAGCGCTGTTTCTCCTACTGTTCTTTATTCCCAGAGGATCACCCGTTTAG 1260
consensus_949#1 ------------------------------------------------------------
consensus_949#0 TGCAGCAACTTTGGTTCAGGTTTGGATATCTCAAAATTTTGTGCAATGTGAAGATATAGG 1320
consensus_949#1 ------------------------------------------------------------
consensus_949#0 CAAGGGGTTGGAGGAGACAGGGTTGCAATAGCTAGGTAGTTTGGTGGATTTTGGATTTTT 1380
consensus_949#1 ------------------------------------------------------------
consensus_949#0 CCAAAAGGTTGACCGGCACTATGTTATGCATGATCTTATGCATGATTTAGCACAACAGGT 1440
consensus_949#1 ------------------------------------------------------------
consensus_949#0 TTCAGCAAAAGAATGTTATACGGTAAGAGGGTTGCAATCTAGCACAATTCGACAAGGTAT 1500
consensus_949#1 ------------------------------------------------------------
consensus_949#0 TCGTCATTTGTCTATCATAACCACTGGTGATGATAATGATAAAAATACCAATTTTCCCAC 1560
consensus_949#1 ------------------------------------------------------------
consensus_949#0 TGAGAAATATGAGATATTACAAAAGATTAGGCCTTTGCAAAAGTTGAGGAGCTTGATGCT 1620
consensus_949#1 ------------------------------------------------------------
consensus_949#0 TTTTGGAAGCAGCAGTGTATATCTATTGAAGTCCATACAAACTGTATGCAAGGAAGCCAA 1680
consensus_949#1 ------------------------------------------------------------
consensus_949#0 ATGTTTACGGTTGTTAAGAGTTTGCGTCTTGAACGCTGACATCAGTGCTATACCCATAAA 1740
consensus_949#1 ------------------------------------------------------------
consensus_949#0 CACATAATGCTCTTAACAGACTACACTTGAGGAGGTATGCGGTTGGTGCAATTTGCCTTA 1800
consensus_949#1 ------------------------------------------------------------
consensus_949#0 ACCCTCACCCTCCTCTTGCTTAAAGTAATCATTTGAATTTCCCTGCAGAGTGCAGACTGC 1860
consensus_949#1 ------------------------------------------------------------
consensus_949#0 ATTCAAATTAACAAGATCTTGCACATTGTTGTTGTCTGTGCTGCACTTGCTTCCTTCAGC 1920
consensus_949#1 ------------------------------------------------------------
consensus_949#0 ACAGATATACTTCTGGAGCCAATGTATACGGTTATATGGCCTTACAACAAAGACCACTAT 1980
consensus_949#1 ------------------------------------------------------------
consensus_949#0 GTACGCATCAACTCATGACTGGTGACAAATGTTAACCCTTTGATTTCTGGAGAAAACTGC 2040
consensus_949#1 ------------------------------------------------------------
consensus_949#0 ATAGAGTTCAATTGTGAATTTGTGACTGGTATAAAAAAAATTGTTTGCTTTGAGATCTAT 2100
consensus_949#1 ------------------------------------------------------------
consensus_949#0 GCAGTTAATTTGGGTGAATTAATTAGTAAGCTTTTAGCCTTGGTTATTGTCATGGTGTTT 2160
consensus_949#1 ------------------------------------------------------------
consensus_949#0 GAGACAATCGTCCGTGTTGATGGTTATGTTGGACGTCATGTACAGACGAAAGCCAGTGTA 2220
consensus_949#1 ------------------------------------------------------------
consensus_949#0 ATTGATTAGGGTAGCTAAAAACTGGAATTGATAGTGTTTACCATGTACTAGTATACTAGG 2280
consensus_949#1 ------------------------------------------------------------
consensus_949#0 AATTAAGTCTTGTGTTTTGAGTTTAATAATTCGGTTTGAATCTTAGCATCGGGC 2334
consensus_949#1 ------------------------------------------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||