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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9658#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 2317 fasta sequence
[CAATCCTCACCCCCGCCTCCCCTTTGTCCCTTTCCCACCGCCCCAAAAACCCACCCCCTCCCTGACTCCTCCCCCCGCAGCTTCCGCCGTCCGCCTCCGNTCCCACGTCGCCGCCCGCTCGTCGTCGCCGCCGGTGAGTCTCCTCCACTCCGTGCTCGCCCCCTCCGTACCCAGCAGCAGGATCGGATCGGTCGCGCGGGCGGCGGGGACGCTCTTGCGTGCTTATTTGTCAAATCAGATCTGAATATAATTTTAGGAGTTGCTTCAGCATGGATACTGGCTGCCTGTCATCTATGAACATAACTGGAA-CAGCCAAGCAAGATCTTTTGCGGGACAACTTCCTACTCATAGGTGCTTCGCAAGTAGCAGCATCCAAGCACTGAAAAGTAGTCAGCATGTGAGCTTTGGAGTGAAATCTNTTGTCTTAAGGAATAAAGGAAAAAGATTCCGTCGGAGGCTCGGTGCTCTACAGGTTGTTTGCCAGGACTTTCCAAGACCTCCACTAGAAAACACAATAAACTTTTTGGAAGCTGGACAACTATCCTCATTTTTCAGAAACAGTGAACAACCCACTAAACCATTACAGGTCGTGATTGCTGGAGCAGGATTAGCTGGTTTATCAACGGCAAAATATCTGGCAGATGCTGGTCATAAACCCATATTGCTTGAGGCAAGGGATGTTTTGGGTGGAAAGATAGCTGCTTGGAAGGATGAAGATGGAGATTGGTATGAAACTGGGCTTCATATCTTTTTTGGAGCTTATCCCAACATACAGAACTTGTTTGGCGAGCTTGGTATTAATGATCGGTTGCAATGGAAGGAACACTCCATGATATTTGCCATGCCAAACAAGCCAGGAGAATCCAGCCGGTTTGATTTTCCTGAAACATTGCCTGCACCCTTAAATGGAATATGGGCCATACTAAGAAACAATGAAATGCTAACTTGGCCAGAGAAGGTGAAGTTTGCTCTTGGACTTTTGCCAGCAATGGTTGGTGGCCAAGCTTATGTTGAAGCTCAAGATGGTTTTACTGTTTCTGAGTGGATGAAAAAGCAGGGTGTTCCTGATCGAGTGAACGATGAAGTTTTCATTGCAATGTCAAAGGCACTTAATTTCATAAATCCTGATGAGTTATCCATGCAGTGCATTCTGATTGCTTTAAACCGATTTCTTCAGGAGAAGCATGGTTCTAAGATGGCATTCTTGGATGGTAATCCTCCTGAAAGGTTATGCATGCCTATTGTTGACCATGTTCGCTCTTTGGGTGGTGAGGTTCGGCTGAATTCTCGTATTCAGAAAATAGAACTTAATCCTGATGGAACAGTGAAACACTTTGCACTTACCGATGGAACTCAAATAACTGGAGATGCTTATGTTTTTGCAACACCAGTTGATATCTTGAAGCTTCTTGTACCTCAAGAGTGGAAAGAAATATCTTATTTCAAGAAGCTGGAGAAGTTGGTGGGAGTTCCTGTTATAAATGTTCATATATGGTTTGATAGAAAACTGAAGAACACATATGACCACC-TTCTTTTCAGCAGGAGTTCACTTTTAAGTGTTTATGCGGACATGTCAGTAACTTGCAAGGAATACTATGATCCAAGCCGTTCAATGCTGGAGTTGGTCTTTGCTCCTGCAGAGGAATGGGTTGGACGGAGTGACACTGAAATCATCGAAGCAACTATGCAAGAGCTAGCCAAGCTATTTCCTGATGAAATTGCTGCTGATCAGAGTAAAGCAAAGATTCTGAAGTATCATGTTGTGAAGACACCAAGATCTGTTTACAAGACTATCCCGGACTGTGAACCTTGCCGACCTCTGCAAAGATCACCGATTGAAGGGTTCTATCTAGCTGGTGACTACACAAAGCAGAAATATTTGGCTTCGATGGAGGGTGCAGTTCTATCTGGGAAGCTTTGTGCTCAGTCTGTAGTGGAGGATTATAAAATGCTATCTCGTAGGAGCCTGAAAAGTCTGCAGTCCGAAGTTCCTGTTGCCTCCTAGTTGTAGTCAGGACTATTCCCAATGGTGTGTGTGTCATCATCCCCTAGTCAGTTTTTTTCTATTTAGTGGGTGCCCAACTCTCCACCAATTTACACATGATGGAACTTGAAAGATGCCTATTTTGGTCTTATCATATTTCTGTAAAGTTGATTTGTGACTGAGAGCTGATGCCGATATGCCATGCTGGAGAAAAAGAACATTATGTAAAACGACCTGCATAGTAATTCTTAGACTTTTGCAAAAGGCAAAAGGGGTAAAGCGACCTTTTTTTTCTATGTGAAGGGATTAAGAGACCTTAAAAAAAAAAAAAAA]
[+] EMBL AU181269 [CAATCCTCACCCCCGCCTCCCCTTTGTCCCTTTCCCACCGCCCCAAAAACCCACCCCCTCCCTGACTCCTCCCCCCGCAGCTTCCGCCGTCCGCCTCCGNTCCCACGTCGCCGCCCGCTCGTCGTCGCCGCCGGTGAGTCTCCTCCACTCCGTGCTCGCCCCCTCCGTACCCAGCAGCAGGATCGGATCGGTCGCGCGGGCGGCGGGGACGCTCTTGCGTGCTTATTTGTCAAATCAGATCTGAATATAATTTTAGGAGTTGCTTCAGCATGGATACTGGCTGCCTGTCATCTATGAACATAACTGGAACCAGCCAAGCAAGATCTTTTGCGGGACAACTTCCTACTCATAGGTGCTTCGCAAGTAGCAGCATCCAAGCACTGAAAAGTAGTCAGCATGTGAGCTTTGGAGTGAAATCTNTTGTCT ]
[+] EMBL AF049356 [ agcatctGCCAGATATTTTGCAGGACAACTTCCTACTCATAGGTGCTTCGCAAGTAGCAGCATCCAAGCACTGAAAGGTAGTCAGCATGTGAGCTTTGGAGTGAAATCTCTTGTCTTAAGGAATAAAGGAAAAAGATTCCGTCGGAGGCTCGGTGCTCTACAGGTTGTTTGCCAGGACTTTCCAAGACCTCCACTAGAAAACACAATAAACTTTTTGGAAGCTGGACAACTATCCTCATTTTTCAGAAACAGTGAACAACCCACTAAACCATTACAGGTCGTGATTGCTGGAGCAGGATTAGCTGGTTTATCAACGGCAAAATATCTGGCAGATGCTGGTCATAAACCCATATTGCTTGAGGCAAGGGATGTTTTGGGTGGAAAGATAGCTGCTTGGAAGGATGAAGATGGAGATTGGTATGAAACTGGGCTTCATATCTTTTTTGGAGCTTATCCCAACATACAGAACTTGTTTGGCGAGCTTGGTATTAATGATCGGTTGCAATGGAAGGAACACTCCATGATATTTGCCATGCCAAACAAGCCAGGAGAATCCAGCCGGTTTGATTTTCCTGAAACATTGCCTGCACCCTTAAATGGAATATGGGCCATACTAAGAAACAATGAAATGCTAACTTGGCCAGAGAAGGTGAAGTTTGCTCTTGGACTTTTGCCAGCAATGGTTGGTGGCCAAGCTTATGTTGAAGCTCAAGATGGTTTTACTGTTTCTGAGTGGATGAAAAAGCAGGGTGTTCCTGATCGAGTGAACGATGAAGTTTTCATTGCAATGTCAAAGGCACTTAATTTCATAAATCCTGATGAGTTATCCATGCAGTGCATTCTGATTGCTTTAAACCGATTTCTTCAGGAGAAGCATGGTTCTAAGATGGCATTCTTGGATGGTAATCCTCCTGAAAGGTTATGCATGCCTATTGTTGACCATGTTCGCTCTTTGGGTGGTGAGGTTCGGCTGAATTCTCGTATTCAGAAAATAGAACTTAATCCTGATGGAACAGTGAAACACTTTGCACTTACCGATGGAACTCAAATAACTGGAGATGCTTATGTTTTTGCAACACCAGTTGATATCTTGAAGCTTCTTGTACCTCAAGAGTGGAAAGAAATATCTTATTTCAAGAAGCTGGAGAAGTTGGTGGGAGTTCCTGTTATAAATGTTCATATATGGTTTGATAGAAAACTGAAGAACACATATGACCACC TTCTTTTCAGCAGGAGTTCACTTTTAAGTGTTTATGCGGACATGTCAGTAACTTGCAAGGAATACTATGATCCAAGCCGTTCAATGCTGGAGTTGGTCTTTGCTCCTGCAGAGGAATGGGTTGGACGGAGTGACACTGAAATCATCGAAGCAACTATGCAAGAGCTAGCCAAGCTATTTCCTGATGAAATTGCTGCTGATCAGAGTAAAGCAAAGATTCTGAAGTATCATGTTGTGAAGACACCAAGATCTGTTTACAAGACTATCCCGGACTGTGAACCTTGCCGACCTCTGCAAAGATCACCGATTGAAGGGTTCTATCTAGCTGGTGACTACACAAAGCAGAAATATTTGGCTTCGATGGAGGGTGCAGTTCTATCTGGGAAGCTTTGTGCTCAGTCTGTAGTGGAGGATTATAAAATGCTATCTCGTAGGAGCCTGAAAAGTCTGCAGTCCGAAGTTCCTGTTGCCTCCTAGTTGTAGTCAGGACTATTCCCAATGGTGTGTGTGTCATCATCCCCTAGTCAGTTTTTTTCTATTTAGTGGGTGCCCAACTCTCCACCAATTTACACATGATGGAACTTGAAAGATGCCTATTTTGGTCTTATCATATTTCTGTAAAGTTGATTTGTGACTGAGAGCTGATGCCGATATGCCACGCTGGAGAAAAAGAACATTATGTAAAACGACCTGCATAGTAATTCTTAGACTTTTGCAAAAGGCAAAAGGGGTAAAGCGACCTTTTTTTTCTATGTGAAGGGATTAAGAGACCTTAAAAAAAAAAAAAAA]
[+] EMBL CB617962 [ CTGGCACATGCTGGTCATAAACCCATATTGCTTGAGGCAAGGGATGTTTTGGGTGGAAAGATAGCTGCTTGGAAGGATGAAGATGGAGATTGGTATGAAACTGGGCTTCATATCTTTTTTGGAGCTTATCCCAACATACAGAACTTGTTTGGCGAGCTTGGTATTAATGATCGGTTGCAATGGAAGGAACACTCCATGATATTTGCCATGCCAAACAAGCCAGGAGAATTCAGCCGGTTTGATTTTCCTGAAACATTGCCTGCACCCTTAAATGGAATATGGGCCATACTAAGAAACAATGAAATGCTAACTTGGCCAGAGAAGGTGAAGTTTGCTCTTGGACTTTTGCCAGCAATGGTTGGTGGCCAAGCTTATGTTGAAGCTCAAGATGGTTTTACTGTTTCTGAGTGGATGAAAAAGCAGGGTGTTCCTGATCGAGTGAACGATGAGGTTTTCATTGCAATGTCAAAGGCACTTAATTTCATAAATCCTGATGAGTTATCCATGCAGTGCATTCTGATTGCTTTAAACCGATTTCTTCAGGAGAAGCATGGTTCTAAGATGGCATTCTTGGATGGTAATCCTCCTGAAAGGTTATGCATGCCTATTGTTGACCATGTTCGCTCTTTGGGTGGTGAGGTTCGGCTGAATTCTCGTATTCAGAAAATAGAACTTAATCCTGATGGAACAGTGAAACACTTTGCACTTACCGATGGAACTCAAATAACTGGAGATGCTTATGTTTTTGCAACACCAGT ]
[-] EMBL CB617963 [ TGATAGAAAACTGAAGAACACATATGCCCACCTTTTTTTTCAGCAGGAGTTCACTTTTAAGTGTTTATGCGGACATGTCAGTAACTTGCAAGGAATACTATGATCCAAACCGTTCAATGCTGGAGTTGGTCTTTGCTCCTGCAGAGGAATGGGTTGGACGGAGTGACACTGAAATCATCGAAGCAACTATGCAAGAGCTAGCCAAGCTATTTCCTGATGAAATTGCTGCTGATCAGAGTAAAGCAAAGATTCTGAAGTATCATGTTGTGAAGACACCAAGATCTGTTTACAAGACTATCCCGGACTGTGAACCTTGCCGCCCTCTGCAAAGATCACCGATTGAAGGGTTTTATTTAGCTGGTGACTACACAAAGCAGAAATATTTGGCTTCGATGGAGGGTGCAGTTCTATCTGGGAAGCTTTGTGCTCAGTCTGTAGTGGAGGATTATAAAATGCTATTTCGTAGGAGCCTGAAAAGTCTGCAGTCTGAAGTTCCTGTTGCCTCCTAGTTGTAGTCAGGACTATTCCCAATGGTGTGTGTGTCATCATCCCCTAGTCAGTTTTTTTTTATTTAGTGGGTGCCCAACTCTCCCCCAATTTACACATGATGGAACTTGAAAGATGCCTATTTTGGTCTTATCATATTTCTGTAAAGTTGATTTGTGACTGAGAGCTGATGCCGATATGCCATGCTGGAGAAAAAGACCATTATGTAAAACGCCCTGCATAGTAATTCTTA ]
[+] EMBL AK058668 [ ATTTTGGTCTTATCATATTTCTGTAAAGTTGATTTGTGACTGAGAGCTGATGCCGATATGCCATGCTGGAGAAAAAGAACATTATGTAAAACGACCTGCATAGTAATTCTTAGACTTTTGCAAAAGGCAAAAGGGGTAAAGCGACC ]
consensusID : consensus_9658#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 240 fasta sequence
[CCCCCNTCTGANGGNCNGACCCACTGAGTCCAGAATGCATGTCCACTTCNTGANTTGCTATTAAACCAGATTTCTTCACGGACGAACGCACTGGTTCNTAACGNTGGCACTTCTTGGATGNTAATCCTCCATGAAAGGTTACTGCATGCCTATTGTTGACCATGTTCGCTCTTTGGGTGGTGAGGTTCGGCTGAATTCTCGTATTCAGAAAANANGAACATTAANTCCCNGATGGAACAG]
[+] EMBL OSC27221 [CCCCCNTCTGANGGNCNGACCCACTGAGTCCAGAATGCATGTCCACTTCNTGANTTGCTATTAAACCAGATTTCTTCACGGACGAACGCACTGGTTCNTAACGNTGGCACTTCTTGGATGNTAATCCTCCATGAAAGGTTACTGCATGCCTATTGTTGACCATGTTCGCTCTTTGGGTGGTGAGGTTCGGCTGAATTCTCGTATTCAGAAAANANGAACATTAANTCCCNGATGGAACAG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_9658#0 CAATCCTCACCCCCGCCTCCCCTTTGTCCCTTTCCCACCGCCCCAAAAACCCACCCCCTC 60
consensus_9658#1 ------------------------------------------------------------
consensus_9658#0 CCTGACTCCTCCCCCCGCAGCTTCCGCCGTCCGCCTCCGNTCCCACGTCGCCGCCCGCTC 120
consensus_9658#1 ------------------------------------------------------------
consensus_9658#0 GTCGTCGCCGCCGGTGAGTCTCCTCCACTCCGTGCTCGCCCCCTCCGTACCCAGCAGCAG 180
consensus_9658#1 ------------------------------------------------------------
consensus_9658#0 GATCGGATCGGTCGCGCGGGCGGCGGGGACGCTCTTGCGTGCTTATTTGTCAAATCAGAT 240
consensus_9658#1 ------------------------------------------------------------
consensus_9658#0 CTGAATATAATTTTAGGAGTTGCTTCAGCATGGATACTGGCTGCCTGTCATCTATGAACA 300
consensus_9658#1 ------------------------------------------------------------
consensus_9658#0 TAACTGGAACAGCCAAGCAAGATCTTTTGCGGGACAACTTCCTACTCATAGGTGCTTCGC 360
consensus_9658#1 ------------------------------------------------------------
consensus_9658#0 AAGTAGCAGCATCCAAGCACTGAAAAGTAGTCAGCATGTGAGCTTTGGAGTGAAATCTNT 420
consensus_9658#1 ------------------------------------------------------------
consensus_9658#0 TGTCTTAAGGAATAAAGGAAAAAGATTCCGTCGGAGGCTCGGTGCTCTACAGGTTGTTTG 480
consensus_9658#1 ------------------------------------------------------------
consensus_9658#0 CCAGGACTTTCCAAGACCTCCACTAGAAAACACAATAAACTTTTTGGAAGCTGGACAACT 540
consensus_9658#1 ------------------------------------------------------------
consensus_9658#0 ATCCTCATTTTTCAGAAACAGTGAACAACCCACTAAACCATTACAGGTCGTGATTGCTGG 600
consensus_9658#1 ------------------------------------------------------------
consensus_9658#0 AGCAGGATTAGCTGGTTTATCAACGGCAAAATATCTGGCAGATGCTGGTCATAAACCCAT 660
consensus_9658#1 ------------------------------------------------------------
consensus_9658#0 ATTGCTTGAGGCAAGGGATGTTTTGGGTGGAAAGATAGCTGCTTGGAAGGATGAAGATGG 720
consensus_9658#1 ------------------------------------------------------------
consensus_9658#0 AGATTGGTATGAAACTGGGCTTCATATCTTTTTTGGAGCTTATCCCAACATACAGAACTT 780
consensus_9658#1 ------------------------------------------------------------
consensus_9658#0 GTTTGGCGAGCTTGGTATTAATGATCGGTTGCAATGGAAGGAACACTCCATGATATTTGC 840
consensus_9658#1 ------------------------------------------------------------
consensus_9658#0 CATGCCAAACAAGCCAGGAGAATCCAGCCGGTTTGATTTTCCTGAAACATTGCCTGCACC 900
consensus_9658#1 ------------------------------------------------------------
consensus_9658#0 CTTAAATGGAATATGGGCCATACTAAGAAACAATGAAATGCTAACTTGGCCAGAGAAGGT 960
consensus_9658#1 ------------------------------------------------------------
consensus_9658#0 GAAGTTTGCTCTTGGACTTTTGCCAGCAATGGTTGGTGGCCAAGCTTATGTTGAAGCTCA 1020
consensus_9658#1 ------------------------------------------------------------
consensus_9658#0 AGATGGTTTTACTGTTTCTGAGTGGATGAAAAAGCAGGGTGTTCCTGATCGAGTGAACGA 1080
consensus_9658#1 ------------------------------------------------------------
consensus_9658#0 TGAAGTTTTCATTGCAATGTCAAAGGCACTTAATTTCATAAATCCTGATGAGTTATCCAT 1140
consensus_9658#1 -------------CCCCCNTCTGANG-GNCNGACCCACTGAGTCCAGAATGCATGTCCAC 46
* ** * * * * * *** ** * ****
consensus_9658#0 GCAGTGCATTCTGATTGCTTTAAACCGATTTCTTCA-GGAGAAGCA---TGGTTCTAA-- 1194
consensus_9658#1 TTCNTGANTTGCTATTA----AACCAGATTTCTTCACGGACGAACGCACTGGTTCNTAAC 102
** ** *** ** * ********** *** * * ****** *
consensus_9658#0 GATGGCA-TTCTTGGATGGTAATCCTCC-TGAAAGGTTA-TGCATGCCTATTGTTGACCA 1251
consensus_9658#1 GNTGGCACTTCTTGGATGNTAATCCTCCATGAAAGGTTACTGCATGCCTATTGTTGACCA 162
* ***** ********** ********* ********** ********************
consensus_9658#0 TGTTCGCTCTTTGGGTGGTGAGGTTCGGCTGAATTCTCGTATTCAGAAAATAGAAC--TT 1309
consensus_9658#1 TGTTCGCTCTTTGGGTGGTGAGGTTCGGCTGAATTCTCGTATTCAGAAAANANGAACATT 222
************************************************** * * **
consensus_9658#0 AAT--CCTGATGGAACAGTGAAACACTTTGCACTTACCGATGGAACTCAAATAACTGGAG 1367
consensus_9658#1 AANTCCCNGATGGAACAG------------------------------------------ 240
** ** **********
consensus_9658#0 ATGCTTATGTTTTTGCAACACCAGTTGATATCTTGAAGCTTCTTGTACCTCAAGAGTGGA 1427
consensus_9658#1 ------------------------------------------------------------
consensus_9658#0 AAGAAATATCTTATTTCAAGAAGCTGGAGAAGTTGGTGGGAGTTCCTGTTATAAATGTTC 1487
consensus_9658#1 ------------------------------------------------------------
consensus_9658#0 ATATATGGTTTGATAGAAAACTGAAGAACACATATGACCACCTTCTTTTCAGCAGGAGTT 1547
consensus_9658#1 ------------------------------------------------------------
consensus_9658#0 CACTTTTAAGTGTTTATGCGGACATGTCAGTAACTTGCAAGGAATACTATGATCCAAGCC 1607
consensus_9658#1 ------------------------------------------------------------
consensus_9658#0 GTTCAATGCTGGAGTTGGTCTTTGCTCCTGCAGAGGAATGGGTTGGACGGAGTGACACTG 1667
consensus_9658#1 ------------------------------------------------------------
consensus_9658#0 AAATCATCGAAGCAACTATGCAAGAGCTAGCCAAGCTATTTCCTGATGAAATTGCTGCTG 1727
consensus_9658#1 ------------------------------------------------------------
consensus_9658#0 ATCAGAGTAAAGCAAAGATTCTGAAGTATCATGTTGTGAAGACACCAAGATCTGTTTACA 1787
consensus_9658#1 ------------------------------------------------------------
consensus_9658#0 AGACTATCCCGGACTGTGAACCTTGCCGACCTCTGCAAAGATCACCGATTGAAGGGTTCT 1847
consensus_9658#1 ------------------------------------------------------------
consensus_9658#0 ATCTAGCTGGTGACTACACAAAGCAGAAATATTTGGCTTCGATGGAGGGTGCAGTTCTAT 1907
consensus_9658#1 ------------------------------------------------------------
consensus_9658#0 CTGGGAAGCTTTGTGCTCAGTCTGTAGTGGAGGATTATAAAATGCTATCTCGTAGGAGCC 1967
consensus_9658#1 ------------------------------------------------------------
consensus_9658#0 TGAAAAGTCTGCAGTCCGAAGTTCCTGTTGCCTCCTAGTTGTAGTCAGGACTATTCCCAA 2027
consensus_9658#1 ------------------------------------------------------------
consensus_9658#0 TGGTGTGTGTGTCATCATCCCCTAGTCAGTTTTTTTCTATTTAGTGGGTGCCCAACTCTC 2087
consensus_9658#1 ------------------------------------------------------------
consensus_9658#0 CACCAATTTACACATGATGGAACTTGAAAGATGCCTATTTTGGTCTTATCATATTTCTGT 2147
consensus_9658#1 ------------------------------------------------------------
consensus_9658#0 AAAGTTGATTTGTGACTGAGAGCTGATGCCGATATGCCATGCTGGAGAAAAAGAACATTA 2207
consensus_9658#1 ------------------------------------------------------------
consensus_9658#0 TGTAAAACGACCTGCATAGTAATTCTTAGACTTTTGCAAAAGGCAAAAGGGGTAAAGCGA 2267
consensus_9658#1 ------------------------------------------------------------
consensus_9658#0 CCTTTTTTTTCTATGTGAAGGGATTAAGAGACCTTAAAAAAAAAAAAAAA 2317
consensus_9658#1 --------------------------------------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||