cluster # 9807

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Oryza sativa
cluster # 9807 cluster # 9807 Sequences # 6 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_9807#0 length = 840 sequences # 5

consensus_9807#1 length = 186 sequences # 1

consensusID : consensus_9807#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 5
consensus length = 840
fasta sequence

                              [ACGACTAAACCGATCCCAAGAAAATGGAAGGCTCGACGTCACCGAAGGCGTTGAGAGTTGCGGCGATCTCCGGCTCGCTGCGGAGGGGCTCCGCCAACACCGGCCTCATCCGCGCCGCCAAGGAGATATGCGAGGAGTCCATCCCGGGGATGGTTATTGACCACGTCGACATCCCCGACCTGCCGCTGCTCAACACCG-ACATGGAGGTTGACGACGGCTTCCCGCCGGCCGTCGAGGCGTTCCGGGCCAGTGTCCGCGCTGCCGACTGCTTCCTCTTCGCCTCTCCCGAGTACAACTACTCCATCTCAGGTCCTCTGAAGAACGCGTTGGACTGGGGATCAAGGCCGCCCAACTGCTGGGCTGACAGAGCCGCCGCCATCGTGAGCGCGTCCGGAGGCTCCGGTGGCAGCCGATCAATGTACCACATCAGGCAAGTCGGGGTTTTCTT-GGACA-TCCA-TTTCATCAACAAGCCTGAAGTGTTCATCAAAGCACATCAGCCTCCGAAAAAATTCGACAGCGATGGCAATTTGATTGATCCGGAGATTAAAGAAGAGCTCAAGGATATGCTCCTGTCACTGCAAGCTTTCGCCCTGAGGCTCCAGGGCAAACCTGCAAACTCTAAACATGCAGCTTAAGCGGGTTTTCAGAAAAAAAACTGGATGAATAGAACTCATTGGATTCTAGGACAACTTATCTTAACGCCGAACAATTGTGTAGCCGTGATTTGAACGGTAGCTTAAATAAATCTTTTGGTTGTGTAACTTGTTCATCTTGATGGAATTACCAAACCACACTTTCCCTTTCTGTTCACAGAATGCATTTGATNCCAAAAAAAAAAAA]

[+] EMBL BP184991             [ACGAGGAAACCGATCCCAAGAAAATGGAAGGCTCGACGTCACCGAAGGCGTTGAGAGTTGCGGCGATCTCCGGCTCGCTGCGGAGGGGCTCCGCCAACACCGGCCTCATCCGCGCCGCCAAGGAGATATGCGAGGAGTCCATCCCGGGGATGGTTATTGACCACGTCGACATCCCCGACCTGCCGCTGCTCAACACCG ACATGGAGGTTGACGACGGCTTCCCGCCGGCCGTCGAGGCGTTCCGGGCCAGTGTCCGCGCTGCCGACTGCTTCCTCTTCGCCTCTCCCGAGTACAACTACTCCATCTCAGGTCCTCTGAAGAACGCGTTGGACTGGGGATCAAGGCCGCCCAACTGCTGGGCTGACAGAGCCGCCGCCATCGTGAGCGCGTCCGGAGGCTCCGGTGGCAGCCGATCAATGTACCACATCAGGCAAGTCGGGGTTTTCTTGGGACATTCCATTTTCATCAACAAGCCTGAAGTGTTCATCAAAGCACATCAGCCTCCGAAAAA                                                                                                                                                                                                                                                                                                                                            ]
[+] EMBL AK062729             [    CTAAACCGATCCCAAGAAAATGGAAGGCTCGACGTCACCGAAGGCGTTGAGAGTTGCGGCGATCTCCGGCTCGCTGCGGAGGGGCTCCGCCAACACCGGCCTCATCCGCGCCGCCAAGGAGATATGCGAGGAGTCCATCCCGGGGATGGTTATTGACCACGTCGACATCCCCGACCTGCCGCTGCTCAACACCG ACATGGAGGTTGACGACGGCTTCCCGCCGGCCGTCGAGGCGTTCCGGGCCAGTGTCCGCGCTGCCGACTGCTTCCTCTTCGCCTCTCCCGAGTACAACTACTCCATCTCAGGTCCTCTGAAGAACGCGTTGGACTGGGGATCAAGGCCGCCCAACTGCTGGGCTGACAGAGCCGCCGCCATCGTGAGCGCGTCCGGAGGCTCCGGTGGCAGCCGATCAATGTACCACATCAGGCAAGTCGGGGTTTTCTT GGACA TCCA TTTCATCAACAAGCCTGAAGTGTTCATCAAAGCACATCAGCCTCCGAAAAAATTCGACAGCGATGGCAATTTGATTGATCCGGAGATTAAAGAAGAGCTCAAGGATATGCTCCTGTCACTGCAAGCTTTCGCCCTGAGGCTCCAGGGCAAACCTGCAAACTCTAAACATGCAGCTTAAGCGGGTTTTCAGAAAAAAAACTGGATGAATAGAACTCATTGGATTCTAGGACAACTTATCTTAACGCCGAACAATTGTGTAGCCGTGATTTGAACGGTAGCTTAAATAAATCTT                                                                                           ]
[+] EMBL CF294252             [    CTAAACCGATCCCAAGAAAATGGAAGGCTCGACGTCACCGAAGGCGTTGAGAGTTGCGGCGATCTCCGGCTCGCTGCGGAGGGGCTCCGCCAACACCGGCTTCATCCGCGCCGCCAAGGAGATATGCGAGGAGTCCATCCCGGGGATGGTTATTGACCACGTCGACATCCCCGACCTGCCGCTGCTCAACACCG ACATGGAGGTTGACGACGGCTTCCCGCCGGCCGTCGAGGCGTTCCGGGCCAGTGTCCGCGCTGCCGACTGCTTCCTCTTCGCCTCTCCCGAGTACAACTACTCCATCTCAGGTCCTCTGAAGAACGCGTTGGACTGGGGATCAAGGCCGCCCAACTGCTGGGCTGACAGAGCCGCCGCCATCGTGAGCGCGTCCGGAGGCTCCGGTGGCAGCCGATCAATGTACCACATCAAGCAAGTCGGGGTTTTCTT GGACA TCCA TTTCATCAACAAGCCTGAAGTGTTCATCAAAGCACATCAGCCTCCGAAAAAATTCGACAGCGATGGCAATTTGATTGATCCGGAGATTAAAGAAGAGCTCAAGGATATGCTCCTGTCACTGCAAGCTTTCGCCCTGAGGCTCCAGGGCAAACCTGCAAACTCTAAACATGCAGCTTAA                                                                                                                                                                                                             ]
[+] EMBL CF305294             [                                        ACCGAAGGCGTTGAGAGTTGCGGCGATCTCCGGCTCGCTGCGGAGGGGCTCCGCCAACACCGGCCTCATCCGCGCCGCCAAGGAGATATGCGAGGAGTCCATCCCGGGGATGGTTATTGACCACGTCGACATCCCCGACCTGCCGCTGCTCAACACCT ATTTTTAGGTTAACGACGGCTTCCCGCCGGCCGTCGAGGCGTTCCGGGCCAGTGTCCGCGCTGCCGACTGCTTCCTCTTCGCCTCTCCCGAGTACAACTACTCCATCTCAGGTCCTCTGAAGAACGCGTTGGACTGGGGATCAAGGCCGCCCAACTGCTGGGCTGACAGAGCCGCCGCCATCGTGAGCGCGTCCGGAGGCTCCGGTGGCAGCCGATCAATGTACCACATCAGGCAAGTCGGGGTTTTCTT GGACA TCCA TTTCATCAACAAGCCTGAAGTGTTCATCAAAGCACATCAGCCTCCGAAAAAATT                                                                                                                                                                                                                                                                                                                                         ]
[-] EMBL CA763023             [                                                                                                                                                         TTATTG GCAAGTTGACATCCCCGACCTCCGGTTGCTCAACACCGCCCATGGAGGTTGAAGGGGGCTTCCCCGCGGCCGTTGAGGCGTTCCGGGCCAGTGTCCGCGATGCCGACTGCTTCCTCTTCGCCTCTCCCGAGTACAACTACTCCATCTCAGGTCCTCTGAAGAACGCGTTGGACTGGGGATCAAGGCCGCCCAACTGCTGGGCTGACAGAGCCGCCGCCATCGTGAGCGCGTCCGGAGGCTCCGGTGGCAGCCGATCAATGTACCACATCAGGCAAGTCGGGGTTTTCTT GGACA TCCA TTTCATCAACAAGCCTGAAGTGTTCATCAAAGCACATCAGCCTCCGAAAAAATTCGACAGCGATGGTAATTTGATTGATCCGGAGATTAAAGAAGAGCTCAAGGATATGCTCCTGTCACTGCAAGCTTTCGCCCTGAGGCTCCAGGGCAAACCTGCAAACTCTAAACATGCAGCTTAAGCGGGTTTTCAGAAAAAAAACTGGATGAATAGAACTCATTGGATTCTAGGACAACTTATCTTAACGCCGAACAATTGTGTAGCCGTGATTTGAACGGTAGCTTAAATAAATCTTTTGGTTGTGTAACTTGTTCATCTTGATGGAATTACCAAACCACACTTTCCCTTTCTGTTCACAGAATGCATTTGATNCCAAAAAAAAAAAA]




>consensus_9807#0
ACGACTAAACCGATCCCAAGAAAATGGAAGGCTCGACGTCACCGAAGGCGTTGAGAGTTG
CGGCGATCTCCGGCTCGCTGCGGAGGGGCTCCGCCAACACCGGCCTCATCCGCGCCGCCA
AGGAGATATGCGAGGAGTCCATCCCGGGGATGGTTATTGACCACGTCGACATCCCCGACC
TGCCGCTGCTCAACACCGACATGGAGGTTGACGACGGCTTCCCGCCGGCCGTCGAGGCGT
TCCGGGCCAGTGTCCGCGCTGCCGACTGCTTCCTCTTCGCCTCTCCCGAGTACAACTACT
CCATCTCAGGTCCTCTGAAGAACGCGTTGGACTGGGGATCAAGGCCGCCCAACTGCTGGG
CTGACAGAGCCGCCGCCATCGTGAGCGCGTCCGGAGGCTCCGGTGGCAGCCGATCAATGT
ACCACATCAGGCAAGTCGGGGTTTTCTTGGACATCCATTTCATCAACAAGCCTGAAGTGT
TCATCAAAGCACATCAGCCTCCGAAAAAATTCGACAGCGATGGCAATTTGATTGATCCGG
AGATTAAAGAAGAGCTCAAGGATATGCTCCTGTCACTGCAAGCTTTCGCCCTGAGGCTCC
AGGGCAAACCTGCAAACTCTAAACATGCAGCTTAAGCGGGTTTTCAGAAAAAAAACTGGA
TGAATAGAACTCATTGGATTCTAGGACAACTTATCTTAACGCCGAACAATTGTGTAGCCG
TGATTTGAACGGTAGCTTAAATAAATCTTTTGGTTGTGTAACTTGTTCATCTTGATGGAA
TTACCAAACCACACTTTCCCTTTCTGTTCACAGAATGCATTTGATNCCAAAAAAAAAAAA

consensusID : consensus_9807#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 186
fasta sequence

                              [AGCGGGTTTTCATAAAAAAAAACTGGATAAATAGCACTCATTGGATTATAGGACAACTTATCTTAACGCCGAACAATTGTGTAACCGTGATTTGAACGGTAGCTTAAATCAATCTTTTGGTTGTGTAACTTGTTCATCGTGATGGAATTACCAACCCGCACTTTCCTTTTCTGTTCAAAAAAAAAA]

[-] EMBL CF294253             [AGCGGGTTTTCATAAAAAAAAACTGGATAAATAGCACTCATTGGATTATAGGACAACTTATCTTAACGCCGAACAATTGTGTAACCGTGATTTGAACGGTAGCTTAAATCAATCTTTTGGTTGTGTAACTTGTTCATCGTGATGGAATTACCAACCCGCACTTTCCTTTTCTGTTCAAAAAAAAAA]




>consensus_9807#1
AGCGGGTTTTCATAAAAAAAAACTGGATAAATAGCACTCATTGGATTATAGGACAACTTA
TCTTAACGCCGAACAATTGTGTAACCGTGATTTGAACGGTAGCTTAAATCAATCTTTTGG
TTGTGTAACTTGTTCATCGTGATGGAATTACCAACCCGCACTTTCCTTTTCTGTTCAAAA
AAAAAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_9807#0      ACGACTAAACCGATCCCAAGAAAATGGAAGGCTCGACGTCACCGAAGGCGTTGAGAGTTG 60
consensus_9807#1      ------------------------------------------------------------
                                                                                  

consensus_9807#0      CGGCGATCTCCGGCTCGCTGCGGAGGGGCTCCGCCAACACCGGCCTCATCCGCGCCGCCA 120
consensus_9807#1      ------------------------------------------------------------
                                                                                  

consensus_9807#0      AGGAGATATGCGAGGAGTCCATCCCGGGGATGGTTATTGACCACGTCGACATCCCCGACC 180
consensus_9807#1      ------------------------------------------------------------
                                                                                  

consensus_9807#0      TGCCGCTGCTCAACACCGACATGGAGGTTGACGACGGCTTCCCGCCGGCCGTCGAGGCGT 240
consensus_9807#1      ------------------------------------------------------------
                                                                                  

consensus_9807#0      TCCGGGCCAGTGTCCGCGCTGCCGACTGCTTCCTCTTCGCCTCTCCCGAGTACAACTACT 300
consensus_9807#1      ------------------------------------------------------------
                                                                                  

consensus_9807#0      CCATCTCAGGTCCTCTGAAGAACGCGTTGGACTGGGGATCAAGGCCGCCCAACTGCTGGG 360
consensus_9807#1      ------------------------------------------------------------
                                                                                  

consensus_9807#0      CTGACAGAGCCGCCGCCATCGTGAGCGCGTCCGGAGGCTCCGGTGGCAGCCGATCAATGT 420
consensus_9807#1      ------------------------------------------------------------
                                                                                  

consensus_9807#0      ACCACATCAGGCAAGTCGGGGTTTTCTTGGACATCCATTTCATCAACAAGCCTGAAGTGT 480
consensus_9807#1      ------------------------------------------------------------
                                                                                  

consensus_9807#0      TCATCAAAGCACATCAGCCTCCGAAAAAATTCGACAGCGATGGCAATTTGATTGATCCGG 540
consensus_9807#1      ------------------------------------------------------------
                                                                                  

consensus_9807#0      AGATTAAAGAAGAGCTCAAGGATATGCTCCTGTCACTGCAAGCTTTCGCCCTGAGGCTCC 600
consensus_9807#1      ------------------------------------------------------------
                                                                                  

consensus_9807#0      AGGGCAAACCTGCAAACTCTAAACATGCAGCTTAAGCGGGTTTTCA-GAAAAAAAACTGG 659
consensus_9807#1      ----------------------------------AGCGGGTTTTCATAAAAAAAAACTGG 26
                                                        ************  ************

consensus_9807#0      ATGAATAGAACTCATTGGATTCTAGGACAACTTATCTTAACGCCGAACAATTGTGTAGCC 719
consensus_9807#1      ATAAATAGCACTCATTGGATTATAGGACAACTTATCTTAACGCCGAACAATTGTGTAACC 86
                      ** ***** ************ *********************************** **

consensus_9807#0      GTGATTTGAACGGTAGCTTAAATAAATCTTTTGGTTGTGTAACTTGTTCATCTTGATGGA 779
consensus_9807#1      GTGATTTGAACGGTAGCTTAAATCAATCTTTTGGTTGTGTAACTTGTTCATCGTGATGGA 146
                      *********************** **************************** *******

consensus_9807#0      ATTACCAAACCACACTTTCCCTTTCTGTTCACAGAATGCATTTGATNCCAAAAAAAAAAA 839
consensus_9807#1      ATTACCAACCCGCACTTTCCTTTTCTGTTCAAAAAAAAAA-------------------- 186
                      ******** ** ******** ********** * **   *                    

consensus_9807#0      A 840
consensus_9807#1      -