These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9890#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1546 fasta sequence [TTCCTCCTCCCGACCTCCCGCTCCTCCGCACTAGTCCGAATCCGAGCTCCAAGTCGTCGAGCAACCTCACCGCCGGAGGACACCTTCCGCCGCTCGCCGTCGCCGCCGCCGCCGCCGCCGCGCAGCATGGCGTAGCGGTGGTGGGCATGGCGGCGCACCAGGGGATGGCGGCGGCGACGGCGGCGGACCGGTTCTGCCTGCCGAGGATGGCGGCGGCGGCGGCGGCCGCCTCGCAGGTGGAGAACTGGGGCGACTCCGGCGTCATCGTCAGCAGCCCGTTCACCGACGACACCTCCACCGACCTCGACGACAGCGCCGACAAGCACCACCTCCACGCTCTAGTGGGCGGCGGCGATGGCGGCGACGACGCCGGCGAGCAGCGAGGCGCGGATTCCTCCGCCGTGTCCAAGGAAAGAAGAGGGGATCAGAAGATGCAGCGGAGGCTTGCGCAGAATCGCGAGGCGGCGCGGAAGAGCCGGATGAGGAAGAAGGCATACATTCAGCAGTTGGAGAGCAGCAGGTCCAAGCTGATGCACCTTGAGCAGGAGCTCCAAAGGGCAAGACAGCAGGGAATCTTCATTGCAACTGGAGGCTCCGGCGATCACGGGCACTCGATCGGAGGAAATGGTACGTTGGCGTTCGACCTTGAGTACGCGCGGTGGCTGGACGAGCACCAGCGGCACATCAACGACCTGCGGGTGGCGCTGAACGCGCAGATGAGCGACGACGAGCTGTGCGAGCTCGTCGACGCCGTGATGATGCACTACGACCAGGTGTTCCGCCTCAAGAGCTTCGCCACCAAGTCCGACGTGTTCCACGTCCTCTCCGGCATGTGGATGAGCCCCGCCGAGCGCTTCTTCATGTGGCTCGGCGGCTTCCGCTCGTCGGAGCTCCTCAAGGTTCTTGCCAGCCATCTTGAGCCGCTGACGGATCAGCAGCTGATGGGCATCTGCAACCTGCAGCAGTCGTCGCAGCAGGCCGAGGACGCGCTGTCGCAGGGGATGGAGGCGCTGCAGCAGACGCTGGGGGACACGTTGGTGTCGGCGGCCGCCACCGTGGTCAGCGGCGGCGGCGGCGCCGACAACGTCACCAACTACATGGGACAGATGGCCATCGCCATGGCCAAGCTCACCACGCTGGAGAACTTCCTCCGTCAGGCTGATCTGCTGAGGCATCAGACGCTGCAGCAGATGCACCGGATCCTGACCACGAGGCAAGCGGCGCGGGCGCTGCTCGTCATCAGCGACTACTTCTCGCGGCTCCGGGCGCTGAGCTCGCTGTGGCTGGCGCGGCCGAGGGACTAGACTGACTAAAGAGGATCAATATCATTTGCCTGAGTTCTGAGTTCTGACGATGGATGGAGGTGAACCTGTTTTTTGATTGCTGAATCCTGAGAGAGCGTTAACTGCGATCGGCATTGTAAAATCAGTTGCTTTGGTGATGAAGCAGTAGTAGTAGGAGAATATTTTAGATTGGGCTCTTGGGCCTGTAACGTGTTGTAGTGTTAGCGTAGTAAGAACTAATCCGCGTACAATGTCAAAAGGAG] [+] EMBL AK109719 [TTCCTCCTCCCGACCTCCCGCTCCTCCGCACTAGTCCGAATCCGAGCTCCAAGTCGTCGAGCAACCTCACCGCCGGAGGACACCTTCCGCCGCTCGCCGTCGCCGCCGCCGCCGCCGCCGCGCAGCATGGCGTAGCGGTGGTGGGCATGGCGGCGCACCAGGGGATGGCGGCGGCGACGGCGGCGGACCGGTTCTGCCTGCCGAGGATGGCGGCGGCGGCGGCGGCCGCCTCGCAGGTGGAGAACTGGGGCGACTCCGGCGTCATCGTCAGCAGCCCGTTCACCGACGACACCTCCACCGACCTCGACGACAGCGCCGACAAGCACCACCTCCACGCTCTAGTGGGCGGCGGCGATGGCGGCGACGACGCCGGCGAGCAGCGAGGCGCGGATTCCTCCGCCGTGTCCAAGGAAAGAAGAGGGGATCAGAAGATGCAGCGGAGGCTTGCGCAGAATCGCGAGGCGGCGCGGAAGAGCCGGATGAGGAAGAAGGCATACATTCAGCAGTTGGAGAGCAGCAGGTCCAAGCTGATGCACCTTGAGCAGGAGCTCCAAAGGGCAAGACAGCAGGGAATCTTCATTGCAACTGGAGGCTCCGGCGATCACGGGCACTCGATCGGAGGAAATGGTACGTTGGCGTTCGACCTTGAGTACGCGCGGTGGCTGGACGAGCACCAGCGGCACATCAACGACCTGCGGGTGGCGCTGAACGCGCAGATGAGCGACGACGAGCTGTGCGAGCTCGTCGACGCCGTGATGATGCACTACGACCAGGTGTTCCGCCTCAAGAGCTTCGCCACCAAGTCCGACGTGTTCCACGTCCTCTCCGGCATGTGGATGAGCCCCGCCGAGCGCTTCTTCATGTGGCTCGGCGGCTTCCGCTCGTCGGAGCTCCTCAAGGTTCTTGCCAGCCATCTTGAGCCGCTGACGGATCAGCAGCTGATGGGCATCTGCAACCTGCAGCAGTCGTCGCAGCAGGCCGAGGACGCGCTGTCGCAGGGGATGGAGGCGCTGCAGCAGACGCTGGGGGACACGTTGGTGTCGGCGGCCGCCACCGTGGTCAGCGGCGGCGGCGGCGCCGACAACGTCACCAACTACATGGGACAGATGGCCATCGCCATGGCCAAGCTCACCACGCTGGAGAACTTCCTCCGTCAGGCTGATCTGCTGAGGCATCAGACGCTGCAGCAGATGCACCGGATCCTGACCACGAGGCAAGCGGCGCGGGCGCTGCTCGTCATCAGCGACTACTTCTCGCGGCTCCGGGCGCTGAGCTCGCTGTGGCTGGCGCGGCCGAGGGACTAGACTGACTAAAGAGGATCAATATCATTTGCCTGAGTTCTGAGTTCTGACGATGGATGGAGGTGAACCTGTTTTTTGATTGCTGAATCCTGAGAGAGCGTTAACTGCGATCGGCATTGTAAAATCAGTTGCTTTGGTGATGAAGCAGTAGTAGTAGGAGAATATTTTAGATTGGGCTCTTGGGCCTGTAACGTGTTGTAGTGTTAGCGTAGTAAGAACTAATCCGCGTACAATGTCAAAAGGAG] consensusID : consensus_9890#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 455 fasta sequence [CGTGGTCGTCGGCGGTGTAGGCGCCGACAACGTCACCAACTACATGGGACAGATGGCCATCGCCATGGCCATGCTCACCACGCTGGAGAACTTCCTCAAGCTTCGGTCAAACATCAATGGCGAACTAAATTGCTTATTACCATGGCGTGATGCGATGATATTTTTGTGTAGGCTGATCTGCTGAGGCAGCAGATGCATCGGATCCTAACCACGAGGCAGGCGGCGCGGGCG-CTGCTCGTCATCAACGACTACTTCTCGTGGCTCCGAGCGCTAAGCTCGCTGTGGCTGGCGCGGCCGAGGGACGCGCGTCACGGCATGGCAGAGCGCGCATCGCACCGACCGCGCCCCCGGCGGCACGGCCAGGTACGCGCCGCAGCCACTGCATCCCGCTGTCGGCGACCACCTCCCCACCCACCGGCCGGCCTGCCCAAGAGGAAAAAAAAAAAAAAAAAAGA] [+] EMBL CB964725 [CGTGGTCGTCGGCGGTGTAGGCG CGACAACGTCACCAACTACATGGGACAGATGGCCATCGCCATGGCCATGCTCACCACGCTGGAGAACTTCCTCAAGCTTCGGTCAAACATCAATGGCGAACTAAATTGCTTATTACCATGGCGTGATGCGATGATATTTTTGTGTAGGCTGATCTGCTGAGGCAGCAGATGCTTCGGATCCTAACCACGAGGCAGGCGGCGCGGGCGCCTGCTCGTCATCAACGACTACTTCTCGTGGCTCCGAGCGCTAAGCTCGCTGTGGCTGGCGCGGCCGAGGGACGCGCGTCACGGCATGGCAGAGCGCGCATCGCACCGACCGCGCCCCCGGCGGCACGGCCAGGTACGCGCCGCAGACACTGCATCCCGCTGTCGGCGACCACCTCCCCACCCACCGGCCGGCCTGCCCAAGAGGAACAACAACAA ] [+] EMBL BU673272 [ GTCGTCGGCGGTGTAGGCGCCGACAACGTCACCAACTACATGGGACAGATGGCCATCGCCATGGCCATGCTCACCACGCTGGAGAACTTCCTCAAGCTTCGGTCAAACATCAATGGCGAACTAAATTGCTTATTACCATGGCGTGATGCGATGATATTTTTGTGTAGGCTGATCTGCTGAGGCAGCAGATGCATCGGATCCTAACCACGAGGCAGGCGGCGCGGGCG CTGCTCGTCATCAACGACTACTTCTCGTGGCTCCGAGCGCTAAGCTCGCTGTGGCTGGCGCGGCCGAGGGACGCGCGTCACGGCATGGCAGAGCGCGCATCGCACCGACCGCGCCCCCGGCGGCACGGCCAGGTACGCGCCGCAGCCACTGCATCCCGCTGTCGGCGACCACCTCCCCACCCACCGGCCGGCCTGCCCAAGAGGAAAAAAAAAAA ] [+] EMBL CB964438 [ TCGTCGGCGGTGTAGGCGCCGACAACGTCACCAACTACATGGGACAGATGGCCATCGCCATGGCCATGCTCACCACGCTGGAGAACTTCCTCAAGCTTCGGTCAAACATCAATGGCGAACTAAATTGCTTATTACCATGGCGTGATGCGATGATATTTTTGTGTAGGCTGATCTGCTGAGGCAGCAGATGCATCGGATCCTAACCACGAGGCAGGCGGCGCGGGCG CTGCTCGTCATCAACGACTACTTCTCGTGGCTCCGAGCGCTAAGCTCGCTGTGGCTGGCGCGGCCGAGGGACGCGCGTCACGGCATGGCAGAGCGCGCATCGCACCGACCGCGCCCCCGGCGGCACGGCCAGGTACGCGCCGCAGCCACTGCATCCCGCTGTCGGCGACCACCTCCCCACCCACCGGCCGGCCTGCCCAAGAGGACAAAAccaccaa ] [+] EMBL BI305714 [ CGTCGGCGGTGTAGGCGCCGACAACGTCACCAACTACATGGGACAGATGGCCATCGCCATGGCCATGCTCACCACGCTGGAGAACTTCCTCAAGCTTCGGTCAAACATCAATGGCGAACTAAATTGCTTATTACCATGGCGTGATGCGATGATATTTTTGTGTAGGCTGATCTGCTGAGGCAGCAGATGCATCGGATCCTAACCACGAGGCAGGCGGCGCGGGCG CTGCTCGTCATCAACGACTACTTCTCGTGGCTCCGAGCGCTAAGCTCGCTGTGGCTGGCGCGGCCGAGGGACGCGCGTCACGGCATGGCAGAGCGCGCATCGCACCGACCGCGCCCCCGGCGGCACGGCCAGGTACGCGCCGCAGCCACTGCATCCCGCTGTCGGCGACCACCTCCCCACCCACCGGCCGGCCTGCCCAAGAGGAAAAAAAAAAAAAAAAAAGA] consensusID : consensus_9890#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 370 fasta sequence [CTGGATGAGCCACGCTGAGCGCTTCTTCATGTGGCTCGGCAGCTTCTGTTGCTCTGAGCTCCTCAAGGTTTGACACGAGTGATCACCCACCCAATTCAGTAACAAGCAAAGAATCTGAAGCTACCATTGACTGCTATTGTTGAATGATGATGATGATGTTGTTTGTGCAGGTACTTGAGAGCCATCTTGAGCCGCTGACGAATCAGCAGTTGATGGGCATCTGCAACCTGC-AGC-AGTCATCGCAGCAGGCCGAGGACGCGCTGTCACAGGGGATGGAAGCTCTGCAGCAGACGCTGGGAGACACACTGGCATCGGCGGCCGCCACCGTGGTCGTCGGCGGCGTGACGCGACAACCGTCACCACTACAGGG] [+] EMBL OS37997 [CTGGATGAGCCACGCTGAGCGCTTCTTCATGTGGCTCGGCAGCTTCTGTTGCTCTGAGCTCCTCAAGGTTTGACACGAGTGATCACCCACCCAATTCAGTAACAAGCAAAGAATCTGAAGCTACCATTGACTGCTATTGTTGAATGATGATGATGATGTTGTTTGTGCAGGTACTTGAGAGCCATCTTGAGCCGCTGACGAATCAGCAGTTGATGGGCATCTGCAACCTGC AGC AGTCATCGCAGCAGGCCGAGGACGCGCTGTCACAGGGGATGGAAGCTCTGCAGCAGACGCTGGGAGACACACTGGCATCGGCGGCCGCCACCGTGGTCGTCGGCGGCGTGACGCGACAACCGTCACCACTACAGGG] [+] EMBL OS37999 [ CACGCTGAGCGCTTCTTCATGTGGCTCGGCAGCTTCTGTTGCTCTGAGCTCCTCAAGGTTTGACACGAGTGATCACCCACCCAATTCAGTAACAAGCAAAGAATCTGAAGCTACCATTGACTGCTATTGTTGAATGATGATGATGATGTTGTTTGTGCAGGTACTTGAGAGCCATCTTGAGCCGCTGACGAATCAGCAGTTGATGGGCATCTGCAACCTGCAAGCAAGTCAACGCAGCAag ] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_9890#0 TTCCTCCTCCCGACCTCCCGCTCCTCCGCACTAGTCCGAATCCGAGCTCCAAGTCGTCGA 60 consensus_9890#1 ------------------------------------------------------------ consensus_9890#2 ------------------------------------------------------------ consensus_9890#0 GCAACCTCACCGCCGGAGGACACCTTCCGCCGCTCGCCGTCGCCGCCGCCGCCGCCGCCG 120 consensus_9890#1 ------------------------------------------------------------ consensus_9890#2 ------------------------------------------------------------ consensus_9890#0 CGCAGCATGGCGTAGCGGTGGTGGGCATGGCGGCGCACCAGGGGATGGCGGCGGCGACGG 180 consensus_9890#1 ------------------------------------------------------------ consensus_9890#2 ------------------------------------------------------------ consensus_9890#0 CGGCGGACCGGTTCTGCCTGCCGAGGATGGCGGCGGCGGCGGCGGCCGCCTCGCAGGTGG 240 consensus_9890#1 ------------------------------------------------------------ consensus_9890#2 ------------------------------------------------------------ consensus_9890#0 AGAACTGGGGCGACTCCGGCGTCATCGTCAGCAGCCCGTTCACCGACGACACCTCCACCG 300 consensus_9890#1 ------------------------------------------------------------ consensus_9890#2 ------------------------------------------------------------ consensus_9890#0 ACCTCGACGACAGCGCCGACAAGCACCACCTCCACGCTCTAGTGGGCGGCGGCGATGGCG 360 consensus_9890#1 ------------------------------------------------------------ consensus_9890#2 ------------------------------------------------------------ consensus_9890#0 GCGACGACGCCGGCGAGCAGCGAGGCGCGGATTCCTCCGCCGTGTCCAAGGAAAGAAGAG 420 consensus_9890#1 ------------------------------------------------------------ consensus_9890#2 ------------------------------------------------------------ consensus_9890#0 GGGATCAGAAGATGCAGCGGAGGCTTGCGCAGAATCGCGAGGCGGCGCGGAAGAGCCGGA 480 consensus_9890#1 ------------------------------------------------------------ consensus_9890#2 ------------------------------------------------------------ consensus_9890#0 TGAGGAAGAAGGCATACATTCAGCAGTTGGAGAGCAGCAGGTCCAAGCTGATGCACCTTG 540 consensus_9890#1 ------------------------------------------------------------ consensus_9890#2 ------------------------------------------------------------ consensus_9890#0 AGCAGGAGCTCCAAAGGGCAAGACAGCAGGGAATCTTCATTGCAACTGGAGGCTCCGGCG 600 consensus_9890#1 ------------------------------------------------------------ consensus_9890#2 ------------------------------------------------------------ consensus_9890#0 ATCACGGGCACTCGATCGGAGGAAATGGTACGTTGGCGTTCGACCTTGAGTACGCGCGGT 660 consensus_9890#1 ------------------------------------------------------------ consensus_9890#2 ------------------------------------------------------------ consensus_9890#0 GGCTGGACGAGCACCAGCGGCACATCAACGACCTGCGGGTGGCGCTGAACGCGCAGATGA 720 consensus_9890#1 ------------------------------------------------------------ consensus_9890#2 ------------------------------------------------------------ consensus_9890#0 GCGACGACGAGCTGTGCGAGCTCGTCGACGCCGTGATGATGCACTACGACCAGGTGTTCC 780 consensus_9890#1 ------------------------------------------------------------ consensus_9890#2 ------------------------------------------------------------ consensus_9890#0 GCCTCAAGAGCTTCGCCACCAAGTCCGACGTGTTCCACGTCCTCTCCGGCATGTGGATGA 840 consensus_9890#1 ------------------------------------------------------------ consensus_9890#2 ------------------------------------------------------------ consensus_9890#0 GCCCCGCCGAGCGCTTCTTCATGTGGCTCGGCGGCTTCCGCTCGTCGGAGCTCCTCAAGG 900 consensus_9890#1 ------------------------------------------------------------ consensus_9890#2 ------------------------------------------------------------ consensus_9890#0 TTCTTGCCAGCCATCTTGAGCCGCTGACGGATCAGCAGCTGATGGGCATCTGCAACCTGC 960 consensus_9890#1 ------------------------------------------------------------ consensus_9890#2 ------------------------------------------------------------ consensus_9890#0 AGCAGTCGTCGCAGCAGGCCGAGGACGCGCTGTCGCAGGGGATGGAGGCGCTGCAGCAGA 1020 consensus_9890#1 ---------------------------CGTGGTCGTCGGCGGTGTAGGCGC--CGACA-A 30 consensus_9890#2 ------------------------------------------------------------ consensus_9890#0 CGCTGGGGGACACGTTGGTGTCGGCGGCCGCCACCGTGGTCAGCGGCGGCGGCGGCGCCG 1080 consensus_9890#1 CGTCACCAACTACATGGG-ACAGATGGCCATCGCCATGGCCA-TGCTCACCACGCTG--G 86 consensus_9890#2 ----------------------------------------CTGGATGAGCCACGCTG--- 17 * * ** * consensus_9890#0 ACAACGTCACCAACTACATGGGACAGATGGCCATCGCCATGGCCAAGCTCACCACGCTGG 1140 consensus_9890#1 AGAACTTCCTCAA--GCTTCGGTCAAACATCAATGGCGA--ACTAAATTGCTTATTACCA 142 consensus_9890#2 AGCGCTTCTTCATGTGGCTCGGC--AGCTTCTGTTGCT----CTGAGCTCCTCAAGGTT- 70 * * ** ** * ** * * ** * * * * consensus_9890#0 AGAACTTCCTCCGTCAGGCTGATCTGCTGAGGCATCAGACGCTGCAGCAGATGCACCGGA 1200 consensus_9890#1 TGGCGTGATGCGATGATATTTTTGTGTAGGCTGATCTGCTGAGGCAGCAGATGCATCGGA 202 consensus_9890#2 TGACACGA-GTGATCACCCACCCAATTCAGT--AACAAGCAAAGAATCTGAAGCTACCAT 127 * * * * * * * * ** ** * consensus_9890#0 TCCTGACCACGAGGCAAGCGGCGCGGGCGCTGCTCGTCATCAGCGACTACTTCTCGCGGC 1260 consensus_9890#1 TCCTAACCACGAGGCAGGCGGCGCGGGCGCTGCTCGTCATCAACGACTACTTCTCGTGGC 262 consensus_9890#2 TGACTGCTATT-GTTGAATGATGATGATGATGTTGTTTGT--GCAGGTACTT---GAGAG 181 * * * * * * * * ** * * * * ***** * * consensus_9890#0 TCCGGGCGCTGAGCTCGCTGTGGCTGGCGCGGCCGAGGGACTAGACTGACTAAAGAGGAT 1320 consensus_9890#1 TCCGAGCGCTAAGCTCGCTGTGGCTGGCGCGGCCGAGGGACGCGCGTCACGGCATGGCAG 322 consensus_9890#2 CC---ATCTTGAGC-CGCTGACGAATCAGCAGTTGATGGGCATCTGCAACC-TGCAGCAG 236 * * *** ***** * ** * ** ** * ** * * consensus_9890#0 CAATATCATTTGCCTGAGTTCTGAGTTCTGACGATGGATGGAGGTGAACCTGTTTTTTGA 1380 consensus_9890#1 AGCGCGCATCGCACCGA--CCGCGCCCCCGGCGGCACGGCCAGGTA----CGCGCCGCAG 376 consensus_9890#2 TCATCGCAGCAGGCCGAGGACGCGCTGTCACAGGGGATGGAAGCTC------TGCAGCAG 290 ** * ** * * ** * consensus_9890#0 TTGCTGAATCCTGAGAGAGCGTTAACTGCGATCGGCATTGTAAA-ATCAGTTGCTTTGGT 1439 consensus_9890#1 CCACTGCATCC--------CGCTGTCGGCGACCACCTCCCCACCCACCGGCCGGCCTGCC 428 consensus_9890#2 ACGCTGGGAGAC---ACACTGGCATCGGCGGCCGCCACCGTGGTCGTCGGCGGCGTGACG 347 *** * * *** * * * * * consensus_9890#0 GATGAAGCAGTAGTAGTAGGAGAATATTTTAGATTGGGCTCTTGGGCCTGTAACGTGTTG 1499 consensus_9890#1 CAAGAGGAAAAAAAAAAAAAAAAAAGA--------------------------------- 455 consensus_9890#2 CGACAACCGTCACCACTACAGGG------------------------------------- 370 * * * * consensus_9890#0 TAGTGTTAGCGTAGTAAGAACTAATCCGCGTACAATGTCAAAAGGAG 1546 consensus_9890#1 ----------------------------------------------- consensus_9890#2 ----------------------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||