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These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10191#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 971 fasta sequence
[ATCTTGAGGAACAACACCTGAATTTTGACGATTAGACAATTGTTTACTTGCACGTGTACGAAGTTCAGGTTGATTTGAATGCACTTTATGACTATTATTTATACATGTACTGTTATTTGCAACTGTAGTAGTGATATTCTTAGTTGAAACATTTTCACCAACTAA-GGATATTTGGT-GTGCTG-GAGATCGATTGTTGAATCCAGATAGTAAATTTGATGTTGCTGATTGACGAGTAAAGTTAGAATTAAAAACTTCACTTGTTGTTGTCGTCACCGTCGTCACTGTGGTTGTACTAGTCGGCACTGATGTTGTCGTAGTTGTGGTGGTGGTAGTACTAGTAGTTACAGCAAAAGCCATCGCAGCTCCACTAGACCGATTAACAGGACTCGATATACTTGCGTTTACCGATGACTTGGATTGGTTAACAACTGGACCGGTTTGATGTGATGATCGATTGGGGTAAAGCTGATTCTAATGGTGGTTTACGAAGATCTAAATGTGGTATAGCCTGACTCATTGGACGGGTCGATGGAAATTTCGGTGCGACAATGTGCTGGAGACGAGAACTAGCAGGGTTACCCATGCCAACTATACTAGATGAACCATTCACTTCATCAGTTTGATGTTGTACTCCTGATGCATTATGTAATCCCCCATTCAATCCACTATTACTAATACGAACCTGCTGATGAAGTGGAATGGGTGGTGGACCAGGATTGGCGAGTTTTGCACGAAATGGCGAAATAAGTAAATTGCCCAAATGATCATTTGAAAATATCGATGATGATGATGATGATGAGGAGGAACAAGAAGTAACAACAGTCGGATGAAAAGAATTGGGAGGATTCGGCACAGATGCTCTATGATGTTGTAGGGGAAAATGATGCGAAAGTTGGCCACTATCACCAACTGCACCAATAACTGATAAGGGTGTAGTGACCGAATTATTAACTGAGGATGACGTGGACACA]
[+] EMBL CD069604 [ATCTTGAGGAACAACACCTGAATTTTGACGATTAGACAATTGTTTACTTGCACGTGTACGAAGTTCAGGTTGATTTGAATGCACTTTATGACTATTATTTATACATGTACTGTTATTTGCAACTGTAGTAGTGATATTCTTAGTTGAAACATTTTCACCAACTAA GGATATTTGGT GTGCTG GAGATCGATTGTTGAATCCAGATAGTAAATTTGATGTTGCTGATTGACGAGTAAAGTTAGAATTAAAAACTTCACTTGTTGTTGTCGTCACCGTCGTCACTGTGGTTGTACTAGTCGGCACTGATGTTGTCGTAGTTGTGGTGGTGGTAGTACTAGTAGTTACAGCAAAAGCCATCGCAGCTCCACTAGACCGATTAACAGGACTCGATATACTTGCGTTTACCGATGACTTGGATTGGTTAACAACTGGACCGGTTTGATGTGATGATCGATTGGGGTAAAGCTGATTCTAATGGTGGTTTACGAAGATCTAAATGTGGTATAGCCTGACTCATTGGACGGGTCGATGGAAATTTCGGTGCGACAATGTGCTGGAGACGAG ]
[-] EMBL CD123819 [ GTTTACTTGCACGTGTACGAAGTTCAGGTTGATTTGAATGCACTTTATGACTATTATTTATACATGTACTGTTATTTGCAACTGTTGTAGTGATATTCTTAGTTGAAACATTTTCACCAACTAA GGATATTTGGT GTGCTG GAGATCGATTGTTGAATCCAGATAGTAAATTTGATGTTGCTGATTGACGAGTAAAGTTAGAATTAAAAACTTCACTTGTTGTTGTCGTTACCGTCGTCcgg ]
[+] EMBL CD069588 [ CAACTAANGGATATTTGGTAGTGCTGCGCGATCGATTGTTGAATCCAGATAGTAAATTTGATGTTGCTGGTTGACGAGTAAAGTTAGAATTAAAAACTTCACTTGTTGTTGTCGTCACCGTCGTCACTGTGGTTGTACTAGTCGGCACTGATGTTGTCGTAGTTGTGGTGGTGGTAGTACTAGTAGTTACAGCAAAAGCCATCGCAGCTCCACTAGACCGATTAACAGGACTCGATATACTTGCGTTTACCGATGACTTGGATTGGTTACCAACTGGACCGG TTGATGTGATGATCGATTGGGGTAAAGCTGATTCTAATGGTGGTTTACGAAGATCTAAATGTGGTATAGCCTGACTCATTGGACGGGT ]
[-] EMBL CD181573 [ GGTTTACGAAGATCTAAATGTGGTATAGCCTGACTCATTGGACGGGTCGATGGAAATTTCGGTGCGACAATGTGCTGGAGACGAGAACTAGCAGGGTTACCCATGCCAACTATACTAGATGAACCATTCACTTCATCAGTTTGATGTTGTACTCCTGATGCATTATGTAATCCCCCATTCAATCCACTATTACTAATACGAACCTGCTGATGAAGTGGAATGGGTGGTGGACCAGGATTGGCGAGTTTTGCACGAAATGGCGAAATAAGTAAATTGCCCAAATGATCATTTGAA ]
[-] EMBL CD130249 [ CCTGCTGATGAAGTGGAATGGGTGGTGGACCAGGATTGGCGAGTTTTGCACGAAATGGCGAAATAAGTAAATTGCCCAAATGATCATTTGAAAATATCGATGATGATGATGATGATGAGGAGGAACAAGAAGTAACAACAGTCGGATGAAAAGAATTGGGAGGATTCGGCACAGATGCTCTATGATGTTGTAGGGGAAAATGATGCGAAAGTTGGCCACTATCACCAACTGCACCAATAACTGATAAGGGTGTAGTGACCGAATTATTAACTGAGGATGACGTGGACACA]
consensusID : consensus_10191#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 7 consensus length = 813 fasta sequence
[CCACCATTATGTGAAATGCATCCAATGCGTGCACTTTTCTTAATTATGCGTAACTCACCACCTCGATTAAAACAATCACCGAACGGATCTAGACATTGAACACCAAGATTTCATGATTTTGTCAGTAAATGTTTAACTAAGGATTTCCATAAACGTCCAAATACATCAGAATTATTTCGACATGAATTCATTACAAATTTACCAAATGAACGACAAATTAGAATTCAACTTAAAGATCATATAGATAGACATAGACGAAATAGGCATACTGAAGAACATGAAAAAATTTATGAATACGAAGGAAGTGATGAAGAGGAG--GAAGAAGAAACCAGTGCAGCTGTTAAAGGGGCTGCTGCCGCTGCTTTAGCTATGTCAGCTGCTGTTAGTGGCAATGGTCAATCACATCGTCTACCTAGTCAAATTAGTCATCATCCACCTCAATTTCGTCAACCAATAGATAAACCTCACCATAATCAAGCGCTTCGAACTAGTGGAGTTCCTGATCAAAACGAAGTAGCATCGTTTGTTTCACAACCATCTGTATCTGGATTAAACTATAAACACCATGGACATATGATACAAGGTGGGAATATTGCAAATGATAATGTACCAGCGAATGCTCGATTTATCTCACGAAATCCTATGTCAGTGCTTAATAAGTTACCTGCTGTTACCCCACAATCAATGATGCCGCATAATAGTCGGTTGCCAAGGTTAGATGAAGGTGAATCAGCAACTGTCAATACTAAAGGACCAGGTGAAAATACACTTCGTCAAATTTTGCTCGTTTACGCAGGTGTCGTANTTAGTAAT]
[+] EMBL CD178823 [CCACCATTATGTGAAATGCATCCAATGCGTGCACTTTTCTTAATTATGCGTAACTCACCACCTCGATTAAAACAATCACCGAACGGATCTAGACATTGAACACCAAGATTTCATGATTTTGTCAGTAAATGTTTAACTAAGGATTTCCATAAACGTCCAAATACATCAGAATTATTTCGACATGAATTCATTACAAATTTACCAAATGAACGACAAATTAGAATTCAACTTAAAGATCATATAGATAGACATAGACGAAATAGGCATACTGAAGAACATGAAAAAATTTATGAATACGAAGGAAGTGATGAAGAGGAG GAAGAAGAAACCAGTGCAGCTGTTAAAGGGGCTGCTGCCGCTGCTTTAGCTATGTCAGCTGCTGTTAGTGGCAATGGTCAATCACATCGTCTACCTAG ]
[+] EMBL CD128172 [ CAGAATTATTTCGACATGAATTCATTACAAATTTACCAAATGAACGACAAATTAGAATTCAACTTAAAGATCATATAGATAGACATAGACGAAATAGGCAAACTGAAGAACATGAAAAAATTTATGAATACGAAGGAAGTGATGAAGAGGAG GAAGAAGAAACCAGTGCAGCTGTTAAAGGGGCTGCTGCCGCTGCTTTAGCTATGTCAGCTGCTGTTAGTGGCAATGGTCAATCACATCGTCTACCTAGTCAAATTAGTCATCATCCACCTCAATTTCGTCAACCAATAGATAAACCTCACCATAATCAAGCGCTTCGAACTAGTGGAGTTCCTGATCAAAACGAAGTAGCATCGTTTGTTTCACAACCATCTGTATCTGGATTAAACTATAAACACCATGGACATATGATACAAGGTGGGAATATTGCAAATGATAATGTACCAGCGAATGCTCGATTTATCTCACGAAATCCTATGTCAGTGC ]
[+] EMBL CD127241 [ AGAACATGATAATAATTATGAATACGAAGGAAGTGATGCAGAGGAG GAAGAAGAAACCAGTGCAGCTGTTAAAGGGGCTGCTGCCGCTGCTTTAGCTATGTCAGCTGCTGTTAGTGGCAATGGTCAATCACATCGTCTACCTAGTCAAATTAGTCATCATCCACCTCAATTTCGTCAACCAATAGATAAACCTCACCATAATCAAGCGCTTCGAACTAGTGGAGTTCCTGATCAAAACGAAGTAGCATCGTTTGTTTCACAACCATCTGTATCTGGATTAAACTATAAACACCATGGACATATGATACAAGGTGGGAATATTGCAAATGATAATGTACCAGCGAATGCTCGATTTATCTCACGAAATCCTATGTCAGTGC ]
[+] EMBL CD127932 [ cgnAAGTG CAAATAGTAGGTGAAGAAGAAACC TTGCAGCTGTTAAA GGGCTGCTGCCGCTGCTTTAGCTATGTCAGCTGCTGTTAGTGGCAATGGTCAATCACATCGTCTACCTAGTCAAATTAGTCATCATCCACCTCAATTTCGTCAACCAATAGATAAACCTCACCATAATCAAGCGCTTCGAACTAGTGGAGTTCCTGATCAAAACGAAGTAGCATCGTTTGTTTCACAACCATCTGTGTCTGGATTAAACTATAAACACCATGGACATATGATACAAGGTGGGAATATTGCAAATGATAATGTACCAGCGAATGCTCGATTTATCTCACGAAATCCTATGTCAGTGC ]
[-] EMBL CD127845 [ AGGAG GAAGAAGAAACCAGTGCAGCTGTTAAAGGGGCTGCTGCCGCTGCTTTAGCTATGTCAGCTGCTGTTAGTGGCAATGGTCAATCACATCGTCTACCTAGTCAAATTAGTCATCATCCACCTCAATTTCGTCAACCAATAGATAAACCTCACCATAATCAAGCGCTTCGAACTAGTGGAGTTCCTGATCAAAACGAAGTAGCATCGTTTGTTTCACAACCATCTGTATCTGGATTAAACTATAAACACCATGGACATATGATACAAGGTGGGAATATTGCAAATGATAATGTACCAGCGAATGCTCGATTTATCTCACGAAATCCTATGTCAGTGCTTAATAAGTTACCT ]
[+] EMBL CD132952 [ CCGCTGCTTTAGCTATGTCAGCTGCTGTTAGTGGCAATGGTCAATCACATCGTCTACCTAGTCAAATTAGTCATCATCCACCTCAATTTCGTCAACCAATAGATAAACCTCACCATAATCAAGCGCTTCGAACTAGTGGAGTTCCTGATCAAAACGAAGTAGCATCGTTTGTTTCACAATCATCTGTATCTGGATTAAACTATAAACACCATGGACATATGATACAAGGTGGGAATATTGCAAATGATAATGTACCAGCGAATGCTCGATTTATCTCACGAAATCCTATGTCAGTGCTTAATAAGTTACCTGCTGTTACCCCACAATCAATGATGCCGCATAATAGTCGGTTGCCAAGGTTAGATGAAGGTGAATCAGCAACTGTCAA ]
[-] EMBL CD166687 [ ATCAAGCGCTTCGAACTAGTGGAGTTCCTGATCAAAACGAAGTGGCATCGTTTGTTTCACAACCATCTGTATCTGGATTAAACTATAAACACCATGGACATATGATACAAGGTGGGAATATTGCAAATGATAATGTACCAGCGAATGCTCGATTTATCTCACGAAATCCCATGTCAGTGCTTAATAAGTTACCTCCTGTTACCCCACAATCAATGATGCCGCATAATAGTCGGTTGCCAAGGTTAGATGAAGGTGAATCAGCAACTGTCAATACTAAAGGACCAGGTGAAAATACACTTCGTCAAATTTTGCTCGTTTACGCAGGTGTCGTANTTAGTAAT]
consensusID : consensus_10191#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 551 fasta sequence
[CGATGACTTGGATTGGTTAACAACTGGACCGGTTGATGTGATGATCGATTGGGGTAAAGCTGATTCTAATGGTGGTTTACGAAGATCTAAATGTGGTATAGCCTGACTCATTGGACGGGTCGATGGAAATTTCGGTGCGACAATGTGCTGGAGACGAGAACTAGCAGGGTTACCCATGCCAACTATACTAGATGAACCATTCACTTCATCAGTTTGATGTTGTACTCCTGATGCATTTATGTAATCCCCCATTCAATCCACTATTACTAATACGAACCTGCTGATGAAGTGGAATGGGTGGTGGACCAGGATGGCGAGTTTTGCACGAAATGGCGAAATAAGTAAATTGCCCAAATGATCATTTGAAAATATCGATGATGATGATGAGGAGG-AACAAGAAGTAACAACAGTCGGATGAAAAGAATTGGGAGGATTCGGCTGTAAACGAGCAAAATTTTGACGAAGTGTATTTTCACCTGGTTCTTTAGTATTGACAGTTGCTGATTCACTATCTACCTTGGCAACCGACTATTATGCGGCATCTTACTTTA]
[-] EMBL CD069567 [CGATGACTTGGATTGGTTAACAACTGGACCGGTTGATGTGATGATCGATTGGGGTAAAGCTGATTCTAATGGTGGTTTACGAAGATCTAAATGTGGTATAGCCTGACTCATTGGACGGGTCGATGGAAATTTCGGTGCGACAATGTGCTGGAGACGAGAACTAGCAGGGTTACCCATGCCAACTATACTAGATGAACCATTCACTTCATCAGTTTGATGTTGTACTCCTGATGCATTTATGTAATCCCCCATTCAATCCACTATTACTAATACGAACCTGCTGATGAAGTGGAATGGGTGGTGGACCAGGATGGCGAGTTTTGCACGAAATGGCGAAATAAGTAAATTGCCCAAATGATCATTTGAAAATATCGATGATGATGATGAGGAGG AACAAGAAGTAACAACAGTCGGATGAAAAGAATTGGGAGGATTCGGCTGTAAACGAGCAAAATTTTGACGAAGTGTATTTTCACCTGGTTCTTTAGTATTGACAGTTGCTGATTCACTATCTACCTTGGCAACCGACTATTATGCGGCATCTTACTTTA]
[+] EMBL CD191206 [ GTTTTGCACGAAATGGCGAAATAAGTAAATTGCCCAAATGATCATTTGAAAATATCGATGATGATGATGAGGAGGAAACAGAAAGT ACAACAGTCGGATGAAAAGAATTGGG ]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_10191#0 ATCTTGAGGAACAACACCTGAATTTTGACGATTAGACAATTGTTTACTTGCACGTGTACG 60
consensus_10191#2 ------------------------------------------------------------
consensus_10191#1 ------------------------------------------------------------
consensus_10191#0 AAGTTCAGGTTGATTTGAATGCACTTTATGACTATTATTTATACATGTACTGTTATTTGC 120
consensus_10191#2 ------------------------------------------------------------
consensus_10191#1 ------------------------------------------------------------
consensus_10191#0 AACTGTAGTAGTGATATTCTTAGTTGAAACATTTTCACCAACTAAGGATATTTGGTGTGC 180
consensus_10191#2 ------------------------------------------------------------
consensus_10191#1 ----------------------------------------------------------CC 2
consensus_10191#0 TGGAGATCGATTGTTGAATCCAGATAGTAAATTTGATGTTGCTGATTGACGAGTAAAGTT 240
consensus_10191#2 ------------------------------------------------------------
consensus_10191#1 ACCATTATGTGAAATGCATCCAATGCGTGCACTTTTCTTAATTATGCGTAACTCACCACC 62
consensus_10191#0 AGAATTAAAAACTTCACTTGTTGT-TGTCGTCACCGTCGTCACTGTGGTTGTACTAGTCG 299
consensus_10191#2 ------------------------------------------------------------
consensus_10191#1 TCGATTAAAACAATCACCGAACGGATCTAGACATTGAACACCAAGATTTCATGATTTTGT 122
consensus_10191#0 GCACTGATGTTGTCGTAGTTGTGGTGGTGGTAGTACTAGTAGTTACAGCAAAAGCCATCG 359
consensus_10191#2 ------------------------------------------------------------
consensus_10191#1 CAGTAAATGTTTAACTAAGGATTTCCATAAACGTCCAAATACATCAGAATTATTTCGACA 182
consensus_10191#0 CAGCTCCACTAGACCGATTAACAGGACTCGATATACTTGCGTTTACCG-ATGACTTGGAT 418
consensus_10191#2 ----------------------------------------------CG-ATGACTTGGAT 13
consensus_10191#1 TGAATTCATTACAAATTTACCAAATGAACGACAAATTAGAATTCAACTTAAAGATCATAT 242
* * * **
consensus_10191#0 TGGTTAACAACTGGACCGGTTTGATGTGATGATCGATTGGGGTAAAGCT--GATTCTAAT 476
consensus_10191#2 TGGTTAACAACTGGACCGGTT-GATGTGATGATCGATTGGGGTAAAGCT--GATTCTAAT 70
consensus_10191#1 AGATAGACA--TAGACGAAATAGGCATACTGAAGAACATGAAAAAATTTATGAATACGAA 300
* * *** * *** * * * *** * * *** * ** * *
consensus_10191#0 GGTGGTTTACGAAGATCTAAATGTGGTA--TAGCCTGACTCATTGGACGGGTCGATGGAA 534
consensus_10191#2 GGTGGTTTACGAAGATCTAAATGTGGTA--TAGCCTGACTCATTGGACGGGTCGATGGAA 128
consensus_10191#1 GGAAGTG-ATGAAGAGGAGGAAGAAGAAACCAGTGCAGCT-GTTAAAGGGGCTGCTG--- 355
** ** * ***** * * * * ** ** ** * *** * **
consensus_10191#0 ATTTCGGTGCGACAA-TGTGCTGGAGACGAGAACTAGCAG-GGTTACCCATGCCAACTAT 592
consensus_10191#2 ATTTCGGTGCGACAA-TGTGCTGGAGACGAGAACTAGCAG-GGTTACCCATGCCAACTAT 186
consensus_10191#1 ---CCGCTGCTTTAGCTATGTCAGCTGCTGTTAGTGGCAATGGTCAATCACATCGTCTAC 412
** *** * * ** * * * * *** *** * ** * ***
consensus_10191#0 ACTAGATGAACCATTCACTTCATCAGTTTGATGTTGTACTCCTGATGCATT-ATGTAATC 651
consensus_10191#2 ACTAGATGAACCATTCACTTCATCAGTTTGATGTTGTACTCCTGATGCATTTATGTAATC 246
consensus_10191#1 -CTAGTCAAATTAGTCA--TCATCCACCTCAATTTCGTCAACCAATAGATAAACCTCA-- 467
**** ** * *** ***** * * ** * * ** ** * * *
consensus_10191#0 CCCCATTCAATCCACTATTACTAATACGAACCTGCTGATGAAGTGGAATGGGTGGTGGAC 711
consensus_10191#2 CCCCATTCAATCCACTATTACTAATACGAACCTGCTGATGAAGTGGAATGGGTGGTGGAC 306
consensus_10191#1 CCATAATCAAGCGCTTCGAACTAGT--GGAGTTCCTGATCAAAACGAAGTAGCATCGTTT 525
** * **** * * **** * * * * ***** ** *** * *
consensus_10191#0 CAGGATTGGCGAGTTTTGCACGAAATGGCGAAATAAGTAAATTGCCCAAATGATC--ATT 769
consensus_10191#2 CAGGAT-GGCGAGTTTTGCACGAAATGGCGAAATAAGTAAATTGCCCAAATGATC--ATT 363
consensus_10191#1 GTTTCACAACCATCTGTATCTGGATTAA-ACTATAAACACCATGGACATATGATACAAGG 584
* * * * * * * **** * ** ** ***** *
consensus_10191#0 TGAAAATATCGATGATGATGATGATGATGAGGAGGAACAAGAAGTAACA-ACAGTCGGAT 828
consensus_10191#2 TGAAAATATCGATGATGATG------ATGAGGAGGAACAAGAAGTAACA-ACAGTCGGAT 416
consensus_10191#1 TGGGAATATTGCAAATGATAATGTACCAGCGAATGCTCGATTTATCTCACGAAATCCTAT 644
** ***** * ***** * * * * * * * ** * ** **
consensus_10191#0 GAAAAGAATTGGGAGGAT-TCGGC-ACAG----ATGCTCTATGATGTTGTAGGGGAAAAT 882
consensus_10191#2 GAAAAGAATTGGGAGGAT-TCGGCTGTAA----ACGAGC-AAAATTTTGACGAAGTGTAT 470
consensus_10191#1 GTCAGTGCTTAATAAGTTACCTGCTGTTACCCCACAATCAATGATGCCGCATAATAGTCG 704
* * ** * * * * ** * * * ** *
consensus_10191#0 GATGCGAAAGTTGGCCACTATCACCAACTGCACCAATAACTGATAAGG-GTGTAGTGACC 941
consensus_10191#2 TTTCACCTGGTTCTTTAGTATTGACAGTTGC-TGATTCACTATCTA---CCTTGGCAACC 526
consensus_10191#1 GTTGCCAAGGTTAGATGAAGGTGA-ATCAGCAACTGTCAATACTAAAGGACCAGGTGAAA 763
* *** * ** * * * * * *
consensus_10191#0 GAATTATTAACTGAGGATGACGTGGACACA-------------------- 971
consensus_10191#2 GACTATTATGCGGCATCTTACTTTA------------------------- 551
consensus_10191#1 ATACACTTCGTCAAATTTTGCTCGTTTACGCAGGTGTCGTANTTAGTAAT 813
* * *
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| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||