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These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_11012#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 831 fasta sequence
[CTTCGGGCCAAAAATTCGGCACGAGGAGTCAATTCAAATGTAAACAACCAACATCGTGCGTCATTTCCAAATACCCTGTCACTCGACTTTCGTTCATTTCGTGGCACGTGTCTGTTTGATTCACTAGTATAAAAATGAAACAGATACATATCACTGTATCATTCGATAAATCATTCAACCGATCATTTCTACATCGAATCTAACACAATGAACAAGACAGTTTCCAAACATATATTCACCGAATCGAGAGCTAGACAGAATTTCGCCAAAGAATGTGAAGATGCCATCAATAAACAAATCAACATGGAACTACAAGCTGCTTACGATTATATGGCATTCTTCACTTACTTCGATCGAGATGATGTATCA-TTTCCGAAAGCAGCTGAATTCTTTCGAAAAGCTTCACATGAGGAACGTGAACATGCAGAGAATTTGGCGAAATATCAGAACAAACGTGGTGGGTCGTGTTCAGTACAGTGATATCAAGTGTCCGACTAAGGTAGAATTCAGTGATTTGGTAGATGCGATGAACACTGCATTGTCAATGGAGAAGGCAGTGAATGACTCATTATTGAAACTTCATGAAATAGCTGCAAAGAACAATGATCCAGCACTAACCGATTTCATTGAGAGTCAGTATTTGCATGAACAAGAAGATGCAATCAAACAATTTGCTGACTATGTGACAGAGACNATCGAAGTTGGAAGTGGACTTGGTCATATCTATTCGANCAGATGACACTNGAAGAATAACACGAATTCATTCAGTTGAACTGTTCATTCATTGGTATGTGCCCTATTTATCTCTGCATTCGTNTTTATCAGTAATGA]
[+] EMBL CD080107 [CTTCGGGCCAAAAATTCGGCACGAGGAGTCAATTCAAATGTAAACAACCAACATCGTGCGTCATTTCCAAATACCCTGTCACTCGACTTTCGTTCATTTCGTGGCACGTGTCTGTTTGATTCACTAGTATAAAAATGAAACAGATACATATCACTGTATCATTCGATAAATCATTCAACCGATCATTTCTACATCGAATCTAACACAATGAACAAGACAGTTTCCAAACATATATTCACCGAATCGAGAGCTAGACAGAATTTCGCCAAAGAATGTGAAGATGCCATCAATAAACAAATCAACATGGAACTACAAGCTGCTTACGATTATATGGCATTCTTCACTTACTTCGATCGAGATGATGTATCA TTTCCGAAAGCAGCTGAATTCTTTCGAAAAGCTTCACATGAGGAACGTGAACATGCAGAGAATTTGGCGAAATATCAGAACAAACGTGGTGGGTCGTGTTCAGTACAGTGATATCAAGTGTCCGACTAAGGTAGAATTCAGTGATTTGGTAGATGCGATGAACACTGCATTGTCAATGGAGAAGGCAGTGAATGACTCATTATTGAAACTTCATGAAATAGCTGCAAAGAACAATGATCCAGCACTAACCGATTTCATTGAGAGTCAGTATTTGCATGAACAAGAAGATGCAATCAAACAATTTGCTGACTATGTGACAGAGACNATCGAAGTTGGAAGTGGACTTGGTCATATCTATTCGANCAGATGACACTNGAAGAATAACACGAATTCATTCAGTTGAACTGTTCATTCATTGGTATGTGCCCTATTTATCTCTGCATTCGTNTTTATCAGTAATGA]
[+] EMBL CD077759 [ atTGAAACAGACACATATGACTGTATCATTCGATAAATCATTCAACCGATCATTTCTACATCGAATCTAACACAATGAACAAGACAGTTTCCAAACATATATTCACCGAATCGAGAGCTAGACAGAATTTCGCCAAAGAATGTGAAGATGCCATCAATAAACAAATCAACATGGAACTACAAGCTGCTTACGATTATATGGCATTCTTCACTTACTTCGATCGAGATGATGTATCATTTTCCGAAAGCAGCTGAATTCT ]
consensusID : consensus_11012#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 721 fasta sequence
[GACGAGAAACTCCAGCAAACGATCTAGGAAA-CTAAAAAGACAGTAGTTTGAGTAGTTTGTTTAAGTTAGAAAAACTATGAGTTCATCAAGAGCCAGACAGAGTTTCGCCACAGAATGTGAAAATGCCATCAATAAACAAATCAATGTAGAACTACAAGCTGCTTACGATTATATGGCATTCTTTACTTACTTCGATCGAGATGATGTATCATTTCCGAAAGCAGCTGAATTCTTTCGAAAAGCTTCACATGAGGAACGTGAACATGCAGAGAAGTTGGCGAAATATCAGAACAAACGTGGT-GGTCGTGTTCAATACAGTGATATCAAGTGTCCGACTAAGACAGAATTCAGTAGTTTGGAAGATGCTATGAATACTGCCCTTGGAATGGAAAAAGCAGTCAGTAAATCATTATTAGAACTTCATGAAGTAGCTTCAAAGAACAATGATCCAGCATTGGCAGATTTTATTGAAAGTGAATTTCTTCATGAACAAGAAGATGCAATCAAACAATTCGCCGATTATTTAACCGAGACACAACGAGTCGGTAAAGGACTTGGAGAATATCTATTCGATAAATTAACATTAAATGAATAGAAAGATTCTAATTACCTATTATAAATGACACTACTAATTATCATGATTTCATTTGATACAGGATAGTTTGTTTTTAAAAATTATTATTTGTAAATATATCAAATATACTTCAGCAATATAATCATA]
[+] EMBL SMFERB [GACGAGAAACTCCAGCAAACGATCTAGGAAA CTAAAAAGACAGTAGTTTGAGTAGTTTGTTTAAGTTAGAAAAACTATGAGTTCATCAAGAGCCAGACAGAGTTTCGCCACAGAATGTGAAAATGCCATCAATAAACAAATCAATGTAGAACTACAAGCTGCTTACGATTATATGGCATTCTTTACTTACTTCGATCGAGATGATGTATCATTTCCGAAAGCAGCTGAATTCTTTCGAAAAGCTTCACATGAGGAACGTGAACATGCAGAGAAGTTGGCGAAATATCAGAACAAACGTGTT GGTCGTGTTCAATACAGTGATATCAATGGTCCGACTAAGACAGAATTCAGTAGTTTGGAAGATGCTATGAATACTGCCCTTGGAATGGAAAAAGCAGTCAGTAAATCATTATTAGAACTTCATGAAGTAGCTTCAAAGAACAATGATCCAGCATTGGCAGATTTTATTGAAAGTGAATTTCTTCATGAACAAGAAGATGCAATCAAACAATTCGCCGATTATTTAACCGAGACACAACGAGTCGGTAAAGGACTTGGAGAATATCTATTCGATAAATTAACATTAAATGAATAGAAAGATTCTAATTACCTATTATAAATGACACTACTAATTATCATGATTTCATTTGATACAGGATAGTTTGTTTTTAAAAATTATTATTTGTAAATATATCAAATATACTTCAGCAATATAATCATA]
[+] EMBL BF936435 [ GAAACTCCAGCAAACGATCTAGGAAACCTAAAAAGATAGTAGTTTGAGTAG TTGTTTAAGTTAGAAAAACTATGAGTTCATCAAGAGCCAGACAGAGTTTCGCCACAGAATGTGAAAATGCCATCAATAAACAAATCAATGTAGAACTACAAGCTGCTTACGATTATATGGCATTCTTTACTTACTTCGATCGAGATGATGTATCATTTCCGAAAGCAGCTGAATTCTTTCGAAAAGCTTCACATGAGGAACGTGAACATGCAGAGAAGTTGGCGAAATATCAGAACAAACGTGGTGGGTCGTGTTCAATACAGTGATATCAAGTGTCCGACTAAGACAGAATTCAGTAGTTTGGAAGATGCTATGAATACTGCCCTTGGAATGGAAAAAGCAGTCAGTAAATCATTATTAGAACTTCATGAAGTAGCTTCAAAGAACAATGATCCAGCATTGGCAGATTTTATTGAAAGTGAATTTCTTCATGAACAAGAAGATGCAATCAAACAATTCGCCGATTATTTAACCGAGACACAACGAGTCGGTAAAGGACTTGGAGAATATCTATTCGATAAATTAACATTAAATGAATAGAAAGATTCTAATTACCTATTATAAATGACACTACTAATTATCATGATTTCATTTGATACAG ]
[+] EMBL AW400399 [ ATGTAGAAGTACAAGCTGCTTACGATTATATGGCATTCTTTACTTACTTCGATCGAGATGATGTATCATTTCCGAAAGCAGCTGAATTCTTTCGAAAAGCTTCACATGAGGAACGTGAACATGCAGAGAAGTTGGCGAAATATCAGAACAAACGTGGT GGTCGTGTTCAATACAGTGATATCAAGTGTCCGACTAAGACAGAATTCAGTAGTTTGGAAGATGCTATGAATACTGCCCTTGGAATGGAAAAAGCAGTCAGTAAATCATTATTAGAACTTCATGAAGTAGCTTCAAAGAACAATGATCCAGCA TGGCAAATTTTATTGAAAGTGAATTTCTTCATGAACAAGAAGATGC ATCAAAC ATTCG CGGTTATTT ACCGAGACAC ACGAGTCGGTAAAGGACTTG ]
consensusID : consensus_11012#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 675 fasta sequence
[CCGAGCCAATATTCGGCACGAGGTTCTACATCGAATCTAACACAATGAACAAGACAGTTTCCAAACATATATTCACCGAATCGAGAGCTAGACAGAATTTCGCCAAAGAATGTGAAGATGCCATCAATAAACAAATCAACATGGAACTACAAGCTGCTTACGATTATATGGCATTCTTCACTTACTTCGATCGAGATGATGTATCATTTCCGAAAGCAGCTGAATTCTTTCGAAAAGCTTCACATGAGGAACGTGAACATGCAGAGAATTTGGCGAAATATCAGAACAAACGTGGTGGTCGTGTTCAGTACAGTGATATCAAGTGTCCGACTAAGGTAGAATTCAGTGATTTGGTAGATGCGATGAACACTGCATTGTCAATGGAGAAGGCAGTGAATGACTCATTATTGAAACTTCATGAAATAGCTGCAAAGAACAATGATCCAGCACTAACCGATTTCATTGAGAGTCAGTATTTGCATGAACAAGAAGATGCAATCAAACAATTTGCTGACTATGTGACAGAGACAAATCGAGTTGGAAGTGGACTTGGTCAATATCTATTCGGCAAGATGACACTGAAAGAATAAACACGAATTCATTCAGTTGAACTGTTCATTCATTGTTATGTGCCTTATTTTATTCTCTGCATTCGTTNTTTATCAGTAAATGAGT]
[+] EMBL CD082679 [CCGAGCCAATATTCGGCACGAGGTTCTACATCGAATCTAACACAATGAACAAGACAGTTTCCAAACATATATTCACCGAATCGAGAGCTAGACAGAATTTCGCCAAAGAATGTGAAGATGCCATCAATAAACAAATCAACATGGAACTACAAGCTGCTTACGATTATATGGCATTCTTCACTTACTTCGATCGAGATGATGTATCATTTCCGAAAGCAGCTGAATTCTTTCGAAAAGCTTCACATGAGGAACGTGAACATGCAGAGAATTTGGCGAAATATCAGAACAAACGTGGTGGTCGTGTTCAGTACAGTGATATCAAGTGTCCGACTAAGGTAGAATTCAGTGATTTGGTAGATGCGATGAACACTGCATTGTCAATGGAGAAGGCAGTGAATGACTCATTATTGAAACTTCATGAAATAGCTGCAAAGAACAATGATCCAGCACTAACCGATTTCATTGAGAGTCAGTATTTGCATGAACAAGAAGATGCAATCAAACAATTTGCTGACTATGTGACAGAGACAAATCGAGTTGGAAGTGGACTTGGTCAATATCTATTCGACAAGATGACACTGAAAGAATAAACACGAATTCATTCAGTTGAACTGTTCATTCATTGTTATGTGCCTTATTTTATTCTCTGCATTCGTTNTTTATCAGTAAATGAGT]
[+] EMBL CD063197 [ CATGCAGAGAATTTGGCGAAATATCAGAACAAACGTGGTGGTCGTGTTCAGTACAGTGATATCAAGTGTCCGACTAAGGTAGAATTCAGTGATTTGGTAGATGCGATGAACACTGCATTGTCAATGGAGAAGGCAGTGAATGACTCATTATTGAAACTTCATGAAATAGCTGCAAAGAACAATGATCCAGCACTAACCGATTTCATTGAGAGTCAGTATTTGCATGAACAAGAAGATGCAATCAAACAATTTGCTGACTATGTGACAGAGACAAATCGAGTTGGAAGTGGACTTGGTCAATATCTATTCGG ]
[-] EMBL CD063012 [ TGCAGAGAATTTGGCGAAATATCAGAACAAACGTGGTGGTCGTGTTCAGTACAGTGATATCAAGTGTCCGACTAAGGTAGAATTCAGTGATTTGGTAGATGCGATGAACACTGCATTGTCAATGGAGAAGGCAGTGAATGACTCATTATTGAAACTTCATGAAATAGCTGCAAAGAACAATGATCCAGCACTAACCGATTTCATTGAGAGTCAGTATTTGCATGAACAAGAAGATGCAATCAAACAATTTGCTGACTATGTGACAGAGACAAATCGAGTTGGAAGTGGACTTGGTCAATATCTATTCGGag ]
consensusID : consensus_11012#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 613 fasta sequence
[AGCAACATGAGTAAATCAAGAGCCAGACAGAATTTCGCCAAAGAATGTGAAGATGCCATCAATAAACAAATCAACATGGAACTACAAGCTGCTTACGATTATATGGCATTCTTCACTTACTTCGATCGAGATGATGTATCATTTCCGAAAGCAGCTGAATTCTTTCGAAAAGCTTCACATGAGGAACGTGAACATGCAGAGAATTTGGCGAAATATCAGAACAAACGTGGTGGTCGTGTTCAGTACAGTGATATCAAGTGTCCGACTAAGGTAGAATTCAGTGATTTGGTAGATGCGATGAACACTGCATTGTCAATGGAGAAGGCAGTGAATGACTCATTACTGAAACTTCATGAAATAGCTGCAAAGAACAATGATCCAGCACTAACCGATTTCATTGAGAGTCAGTATTTGCATGAACAAGAAAATGCAATCAAACAATTTGCTGACTATGTGACAGAGACAAATCGAGTTGGAAATGGACTTGGTCAATATCTATTCGACAAGATGACACTGAAAGAATAAACACGACTTCATTCAGTTGAACTGTTCATTCATTGTTATGTGCCTTATTTTATTCTCTGCATTCGTTTTTTATCAGTAAATGAGTTAT]
[+] EMBL CD081252 [AGCAACATGAGTAAATCAAGAGCCAGACAGAATTTCGCCAAAGAATGTGAAGATGCCATCAATAAACAAATCAACATGGAACTACAAGCTGCTTACGATTATATGGCATTCTTCACTTACTTCGATCGAGATGATGTATCATTTCCGAAAGCAGCTGAATTCTTTCGAAAAGCTTCACATGAGGAACGTGAACATGCAGAGAATTTGGCGAAATATCAGAACAAACGTGGTGGTCGTGTTCAGTACAGTGATATCAAGTGTCCGACTAAGGTAGAATTCAGTGATTTGGTAGATGCGATGAACACTGCATTGTCAATGGAGAAGGCAGTGAATGACTCATTACTGAAACTTCATGAAATAGCTGCAAAGAACAATGATCCAGCACTAACCGATTTCATTGAGAGTCAGTATTTGCATGAACAAGAAAATGCAATCAAACAATTTGCTGACTATGTGACAGAGACAAATCGAGTTGGAAATGGACTTGGTCAATATCTATTCGACAAGATGACACTGAAAGAATAAACACGACTTCATTCAGTTGAACTGTTCATTCATTGTTATGTGCCTTATTTTATTCTCTGCATTCGTTTTTTATCAGTAAATGAGT ]
[-] EMBL CD075082 [ AAGATGCCATCAATAAACAAATCAACATGGAACTACAAGCTGCTTACGATTATATGGCATTCTTCACTTACTTCGATCGAGATGATGTATCATTTCCGAAAGCAGCTGAATTCTTTCGAAAAGCTTCACATGAGGAACGTGAACATGCAGAGAATTTGGCGAAATATCAGAACAAACGTGGTGGTCGTGTTCAGTACAGTGATATCAAGTGTCCGACTAAGGTAGAATTCAGTGATTTGGTAGATGCGATGAACACTGCATTGTCAATGGAGAAGGCAGTGAATGACTCATTACTGAAACTTCATGAAATAGCTGCAAAGAACAATGATCCAGCACTAACCGATTTCATTGAGAGTCAGTATTTGCATGAACAAGAAAATGCAATCAAACAATTTGCTGACTATGTGACAGAGACAAATCGAGTTGGAAATGGACTTGGTCAATATCTATTCGACAAGATGACACTGAAAGAATAAACACGACTTCATTCAGTTGAACTGTTCATTCATTGTTATGTGCCTTATTTTATTCTCTGCATTCGTTTTTTATCAGTAAATGAGTT ]
[+] EMBL CD083393 [ TCACATGAGGAACGTG ACATGCAGAGAATTTGGCGAAATATCAGAACAAACGTGGTGGTCGTGTTCAGTACAGTGATATCAAGTGTCCGACTAAGGTAGAATTCAGTGATTTGGTAGATGCGATGAACACTGCATTGTCAATGGAGAAGGCAGTGAATGACTCATTACTGAAACTTCATGAAATAGCTGCAAAGAACAATGATCCAGCACTGACCAATTTCATTGAGAGTCAGTATTTGCATGAACAAGAAAATGCAATCAAACAATTTGCTGACTATGTGACAGAGACAGATCGAGTTGGAAATGGACTTGGTCAATATCTATTCGACAAGATGACACTGAAAGAATAAACACGACTTCATTCAGTTGAACTGTTCATTCATTGTTATGTGCCTTATTTTATTCTCTGCATTCGTTTTTTATCAGTAAATGAGT ]
[+] EMBL SM565 [ CAAGAAGATGCAATCANACAATTTGNTGACTATGTGACAGAGACAAATCGAGTTGGAAGTGGACTTGGTCAATATCTATTCGACAAGATGACACTGANAGAATANACACGACTTCA TCAGTTGAACTGTTCATTCA TGTTATGTGCCTTATTTTATTCTCTGCATTCGTNTTTNATCAGTAAATGAGTTAT]
[+] EMBL SM564 [ ATGCAATCANACAATTTGNTGACTATGTGACAGAGACAAATCGAGTTGGAAGTGGACTTGGTCAATATCTATTCGACAAGATGACACTGANAGAATANACACGACTTCA TCAGTTGAACTGTTCATTCA TGTTATGTGCCTTATTTTATTCTCTGCATTCGTNTTTNATCAGTAAATGAGTTAT]
consensusID : consensus_11012#4 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 11 consensus length = 588 fasta sequence
[CTCCGAGGCCANAATTGGGCACGAGGGCTTACGATTATATGGCATTCTTCACTTACTTCGATCGAGATGATGTATCATTTCCGAAAGCAGCTGAATTCTTTCGAAAAGCTTCACATGAGGAACGTGAACATGCAGAGAAGTTGGCGAAATATCAGAACAAACGTGGTGGTCGTGTTCAATACAGTGATATCAAGTGTCCGACTAAGACAGAATTCAGTAGTTTGGAAGATGCTATGAATACTGCCCTTGGAATGGAAAAAGCAGTCAGTAAATCATTATTAGAACTTCATGAAGTAGCTTCAAAGAACAATGATCCAGCATTGGCAGATTTTATTGAAAGTGAATTTCTTCATGAACAAG-AA-GATGCAATCAAACAATTCGCCGATTATTTAACCGAG-ACACAACGAGTCGGTAAAGGACTTGGAGAATATCTATTCGATAAATTAACATTAAATG-AATAGAAAGATTCTAATTACCT-ATTA-TAAATGACACTACTAATTATCATGATTTCATTTGATACAGGATAGTTTGTTTTTAAAAATTATTATTTGTAAATATATCAAATATACTTCAGCAATATAATCATAT]
[+] EMBL CD081371 [CTCCGAGGCCANAATTGGGCACGAGGGCTTACGATTATATGGCATTCTTCACTTACTTCGATCGAGATGATGTATCATTTCCGAAAGCAGCTGAATTCTTTCGAAAAGCTTCACATGAGGAACGTGAACATGCAGAGAAGTTGGCGAAATATCAGAACAAACGTGGTGGTCGTGTTCAATACAGTGATATCAAGTGTCCGACTAAGACAGAATTCAGTAGTTTGGAAGATGCTATGAATACTGCCCTTGGAATGGAAAAAGCAGTCAGTAAATCATTATTAGAACTTCATGAAGTAGCTTCAAAGAACAATGATCCAGCATTGGCAGATTTTATTGAAAGTGAATTTCTTCATGAACAAG AA GATGCAATCAAACAATTCGCCGATTATTTAACCGAG ACACAACGAGTCGGTAAAGGACTTGGAGAATATCTATTCGATAAATTAACATTAAATG AATAGAAAGATTCTAATTACCT ATTA TAAATGACACTACTAATTATCATGATTTCATTTGATACAGGATAGTTTGTTTTTAAAAATTATTATTTGTAAATATATCAAATATACTTCAGCAATATAATCATA ]
[-] EMBL CD075205 [ CTTACGATTATATGGCATTCTTCACTTACTTCGATCGAGATGATGTATCATTTCCGAAAGCAGCTGAATTCTTTCGAAAAGCTTCACATGAGGAACGTGAACATGCAGAGAAGTTGGCGAAATATCAGAACAAACGTGGTGGTCGTGTTCAATACAGTGATATCAAGTGTCCGACTAAGACAGAATTCAGTAGTTTGGAAGATGCTATGAATACTGCCCTTGGAATGGAAAAAGCAGTCAGTAAATCATTATTAGAACTTCATGAAGTAGCTTCAAAGAACAATGATCCAGCATTGGCAGATTTTATTGAAAGTGAATTTCTTCATGAACAAG AA GATGCAATCAAACAATTCGCCGATTATTTAACCGAG ACACAACGAGTCGGTAAAGGACTTGGAGAATATCTATTCGATAAATTAACATTAAATG AATAGAAAGATTCTAATTACCT ATTA TAAATGACACTACTAATTATCATGATTTCATTTGATACAGGATAGTTTGTTTTTAAAAATTATTATTTGTAAATATATCAAATATACTTCAGCAATATAATCATAT]
[+] EMBL SMAA18482 [ ACTTACTTCGATCGAGATGATGTATCATTTCCGAAAGCAGCTGAATTCTTTCGAAAAGCTTCACATGAGGAACGTGAACATGCAGAGAAGTTGGCGAAATATCAGAACAAACGTGGTGGTCGTGTTCAATACAGTGATATCAAGTGTCCGACTAAGACAGAATTCAGTAGTTTGGAAGATGCTATGAATACTGCCCTTGGAATGGAAAAAGCAGTCAGTAAATCATTATTAGAACTTCATGAAGTAGCTTCAAAGAACAATGATCCAGCATTGGCAGATTTTATTGAAAGTGAATTTCTTCATGAACAAG AA GATGCAATCAAACAATTCGCCGATTATTTAACCGAG ACACAACGAGTCGGTAAAGGACTTGGAGAATATCTATTCGATAAATTAACATTAAATG AATAGAAAGATTCTAATTACCT ATTA TAAATGACACTACTAATTATCATGATTTCATTTGATACAGGATAGTTTGTTTTTAAAAATAATAAT ]
[+] EMBL CD179851 [ AGCTGAATTCTTTCGAAAAGCTTCACATGAGGAACGTGAACATGCAGAGAAGTTGGCGAAATATCAGAACAAACGTGGTGGTCGTGTTCAATACAGTGATATCAAGTGTCCGACTAAGACAGAATTCAGTAGTTTGGAAGATGCTATGAATACTGCCCTTGGAATGGAAAAAGCAGTCAGTAAATCATTATTAGAACTTCATGAAGTAGCTTCAAAGAACAATGATCCAGCATTGGCAGATTTTATTGAAAGTGAATTTCTTCATGAACAAG AAGGATGC ATCAAACAATTCGCCGATTATTTAACCGAGNACAC ACGAGTCGGT ]
[+] EMBL CD179935 [ AGCTGAATTCTTTCGAAAAGCTTCACATGAGGAACGTGAACATGCAGAGAAGTTGGCGAAATATCAGAACAAACGTGGTGGTCGTGTTCAATACAGTGATATCAAGTGTCCGACTAAGACAGAATTCAGTAGTTTGGAAGATGCTATGAATACTGCCCTTGGAATGGAAAAAGCAGTCAGTAAATCATTATTAGAACTTCATGAAGTAGCTTCAAAGAACAATGATCCAGCATTGGCAGATTTTATTGAAAGTGAATTTCTTCATGAACAAGAAA GATGC ATCAAAC ]
[-] EMBL CD062985 [ ATGCAGAGAAGTTGGCGAAATATCAGAACAAACGTGGTGGTCGTGTTCAATACAGTGATATCAAGTGTCCGACTAAGACAGAATTCAGTAGTTTGGAAGATGCTATGAATACTGCCCTTGGAATGGAAAAAGCAGTCAGTAAATCATTATTAGAACTTCATGAAGTAGCTTCAAAGAACAATGATCCAGCATTGGCAGATTTTATTGAAAGTGAATTTCTTCATGAACAAG AA GATGCAATCAAACAATTCGCTGACTATGTGACAGAG ACAAATCGAGTTGGAAGTGGACTTGATCAATATCTATTCGgag ]
[-] EMBL CD063277 [ TAGTTTGGAAAATGCTATGAATACTGCCCTTGGAATGGAAAAAGCAGTCAGTAAATCATTATTAGAACTTCATGAAGTAGCTTCAAAGAACAATGATCCAGCATTGGCAGATTTTATTGAAAGTGAATTTGTTCATGAACAAG AA GATGCAATCAAACAATTCGCttaa ]
[-] EMBL BG931753 [ AAGATGCTATGAATACTGCCCTTGGAATGGAAAAAGCAGTCAGTAAATCATTATTAGAACTTCATGAAGTAGCTTCAAAGAACAATGATCCAGCATTGGCAGATTTTATTGAAAGTGAATTTCTTCATGAACAAG AA GATGCAATCAAACAATTCGCCGATTATTTAACCGAa ]
[+] EMBL CD179953 [ AATTCGCCGATTATTTAACCGAG ACACAACGAGTCGGTAAAGGACTTGGAGAATATCTATTCGATAAATTAACATTAAATGAAATAGAAAGAATCTAATTACCTAATTACTAAATGACACTACTAATTATCATGATTTC ]
[+] EMBL CD179934 [ AATTCGCCGATTATTTAACCGAG ACACAACGAGTCGGTAAAGGACTTGGAGAATATCTATTCGATAAATTAACATTAAATG AATAGAAAGATTCTAATTACCT ATTA TAAATGACACTACTAATTATCATGATTTC ]
[-] EMBL BG931693 [ TCGGTAAAGGACTTGGAGAATATCTATTCGATAAATTAACATTAAATG AATAGAAAGATTCTAATTACCT ATTA TAAATGAC ]
consensusID : consensus_11012#5 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 526 fasta sequence
[CGAGGCAGACCNCGACGTACGATCATTTCTACATCGAATCTAACACAATGAACAAGACAGTTTCCAAACATATATTCACCGAAGTCGAGAGCTAGACAGAATTTCGCCAAAGAATGTGAAGATGCCATCAATAAACAAATCAACATGGAACTACAAGCTGCTTACGATTATATGGCATTCTTCACTTACTTCGATCGAGATGATGTATCATTTCCGAAAGCAGCTGAATTCTTTCGAAAAGCTTCACATGAGGAACGTGAACATGCAGAGAATTTGGCGAAATATCAGAACAAACGTGGTGGTCGTGTTCAGTACAGTGATATCAAGTGTCCGACTAAGGTAGAATTCAGTGATTTGGTAGATGCGATGAACACTGCATTGTCAATGGAGAAGGCAGTGAATGACTCATTATTGAAACTTCATGAAATAGCTACAAAGAACAATGATCCAGCACTGACCAATTTCATTGAGAGTCAGTATTTGCATGAACAAGAAGATGCAATCAAACAATTTGCTGACTATGTGA]
[+] EMBL CD084427 [CGAGGCAGACCNCGACGTACGATCATTTCTACATCGAATCTAACACAATGAACAAGACAGTTTCCAAACATATATTCACCGAAGTCGAGAGCTAGACAGAATTTCGCCAAAGAATGTGAAGATGCCATCAATAAACAAATCAACATGGAACTACAAGCTGCTTACGATTATATGGCATTCTTCACTTACTTCGATCGAGATGATGTATCATTTCCGAAAGCAGCTGAATTCTTTCGAAAAGCTTCACATGAGGAACGTGAACATGCAGAGAATTTGGCGAAATATCAGAACAAACGTGGTGGTCGTGTTCAGTACAGTGATATCAAGTGTCCGACTAAGGTAGAATTCAGTGATTTGGTAGATGCGATGAACACTGCATTGTCAATGGAGAAGGCAGTGAATGACTCATTATTGAAACTTCATGAAATAGCTACAAAGAACAATGATCCAGCACTGACCAATTTCATTGAGAGTCAGTATTTGCATGAACAAGAAGATGCAATCAAACAATTTGCTGACTATGTGA]
consensusID : consensus_11012#6 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 341 fasta sequence
[CNTCGCGGCCANAATTCGGCACGAGGATCGAATCTAACACAATGAACAAGACAGTTTCCAAACAAATCAACATGGAACTACAAGCTGCTTACGATTATATGGCATTCTTCACTTACTTCGATCGAGATGATGTATCATTTCCGAAAGCAGCTGAATTCTTTCGAAAAGCTTCACATGAGGAACGTGAACATGCAGAGAATTTGGCGAAATATCAGAACAAACGTGGTGGTCGTGTTCAGTACAGTGATATCAAGTGTCCGACTAAGGTAGAATTCAGTGATTTGGTAGATGCGATGAACACTGCATTGTCAATGGAGAAGGCAGTGAATGACTCATTATTG]
[+] EMBL CD077808 [CNTCGCGGCCANAATTCGGCACGAGGATCGAATCTAACACAATGAACAAGACAGTTTCCAAACAAATCAACATGGAACTACAAGCTGCTTACGATTATATGGCATTCTTCACTTACTTCGATCGAGATGATGTATCATTTCCGAAAGCAGCTGAATTCTTTCGAAAAGCTTCACATGAGGAACGTGAACATGCAGAGAATTTGGCGAAATATCAGAACAAACGTGGTGGTCGTGTTCAGTACAGTGATATCAAGTGTCCGACTAAGGTAGAATTCAGTGATTTGGTAGATGCGATGAACACTGCATTGTCAATGGAGAAGGCAGTGAATGACTCATTATTG]
[+] EMBL CD063122 [ CATGCAGAGAATTTGGCGAAATATCAGAACAAACGTGGTGGTCGTGTTCAGTACAGTGATATCAAGTGTCCGACTAAGGTAGAATTCAGTGATTTGGTAGATGCGATGAACACTGCATTGTCAATGGAGAAGGCAGTGAATGACTCATTATT ]
consensusID : consensus_11012#7 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 231 fasta sequence
[GATGCAATCAAACAATTCGCCCGATTATTTAAGCCGAGACACAACGAGTCGGTAAAGGACTTGGAGAATATCTATTCGATAAATTAACATTAAATGATCTAAGAAGAATTCTAATTACCTATTATAAACTGACACTCATAATTATCATGATTTCATTTGATACCATTATAGTTTTCCGTTTTCAGAAATTAATTACTTTGCCAAATATATCAAATAGCTAGCCTTAAGGCC]
[+] EMBL AA952818 [GATGCAATCAAACAATTCGCCCGATTATTTAAGCCGAGACACAACGAGTCGGTAAAGGACTTGGAGAATATCTATTCGATAAATTAACATTAAATGATCTAAGAAGAATTCTAATTACCTATTATAAACTGACACTCATAATTATCATGATTTCATTTGATACCATTATAGTTTTCCGTTTTCAGAAATTAATTACTTTGCCAAATATATCAAATAGCTAGCCTTAAGGCC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_11012#0 ------------------------------------------------------------
consensus_11012#5 ------------------------------------------------------------
consensus_11012#2 ------------------------------------------------------------
consensus_11012#6 ------------------------------------------------------------
consensus_11012#3 ------------------------------------------------------------
consensus_11012#4 ------------------------------------------------------------
consensus_11012#7 ------------------------------------------------------------
consensus_11012#1 GACGAGAAACTCCAGCAAACGATCTAGGAAACTAAAAAGACAGTAGTTTGAGTAGTTTGT 60
consensus_11012#0 ------------------------------------------------------------
consensus_11012#5 ------------------------------------------------------------
consensus_11012#2 ------------------------------------------------------------
consensus_11012#6 ------------------------------------------------------------
consensus_11012#3 ------------------------------------------------------------
consensus_11012#4 ------------------------------------------------------------
consensus_11012#7 ------------------------------------------------------------
consensus_11012#1 TTAAGTTAGAAAAACTATGAGTTCATCAAGAGCCAGACAGAGTTTCGCCACAGAATGTGA 120
consensus_11012#0 ------------------------------------------------------------
consensus_11012#5 ------------------------------------------------------------
consensus_11012#2 ------------------------------------------------------------
consensus_11012#6 ------------------------------------------------------------
consensus_11012#3 ------------------------------------------------------------
consensus_11012#4 --------------CTCCGAGGCCANAATTGGGCACGAGGGCTTACGATTATATGGCATT 46
consensus_11012#7 ------------------------------------------------------------
consensus_11012#1 AAATGCCATCAATAAACAAATCAATGTAGAACTACAAGCTGCTTACGATTATATGGCATT 180
consensus_11012#0 ----------CTTCGGGCCAAAAATTCGGCACGAGGAGTCAATTCAAATGTAAACAACCA 50
consensus_11012#5 ------------------------------------------------------------
consensus_11012#2 ------------------------------------------------------------
consensus_11012#6 ------------------------------------------------------------
consensus_11012#3 ------------------------------------------------------------
consensus_11012#4 CTTCACTTACTTCGATCGAGATGATGTATCATTTCCGAAAGCAGCTGAATTCTTTCGAAA 106
consensus_11012#7 ------------------------------------------------------------
consensus_11012#1 CTTTACTTACTTCGATCGAGATGATGTATCATTTCCGAAAGCAGCTGAATTCTTTCGAAA 240
consensus_11012#0 ACATCGTGCGTCATTTCCAAATACCCTGTCACTCGACTTTCGTTCATTTCGTGGCACGTG 110
consensus_11012#5 ------------------------------------------------------------
consensus_11012#2 ------------------------------------------------------------
consensus_11012#6 ------------------------------------------------------------
consensus_11012#3 ------------------------------------------------------------
consensus_11012#4 AGCTTCACATGAGGAACGTGAACATGCAGAGAAGTTGGCGAAATATCAGAACAAACGTGG 166
consensus_11012#7 ------------------------------------------------------------
consensus_11012#1 AGCTTCACATGAGGAACGTGAACATGCAGAGAAGTTGGCGAAATATCAGAACAAACGTGG 300
consensus_11012#0 TCTGTTTGATTCACTAGTATAAAAATGAAACAGATACATATCACTGTATCATTCGATAAA 170
consensus_11012#5 ---------------------------------------------------CGAGGCAGA 9
consensus_11012#2 ----------------------------------------------------CCGAGCCA 8
consensus_11012#6 ------------------------------------------------------------
consensus_11012#3 ------------------------------------------------------------
consensus_11012#4 TGGTCGTGTTCAATACAGTGATATCAAGTGTCCGACTAAGACAGAATTCAGTAGTTTGGA 226
consensus_11012#7 ------------------------------------------------------------
consensus_11012#1 TGGTCGTGTTCAATACAGTGATATCAAGTGTCCGACTAAGACAGAATTCAGTAGTTTGGA 360
consensus_11012#0 TCATT-CAACCGATCATTTCTACATCGAATCTAACACAATGAACAAGACAGTTTCCAAAC 229
consensus_11012#5 CCNCGACGTACGATCATTTCTACATCGAATCTAACACAATGAACAAGACAGTTTCCAAAC 69
consensus_11012#2 ATATTCGGCACGA--GGTTCTACATCGAATCTAACACAATGAACAAGACAGTTTCCAAAC 66
consensus_11012#6 ------------------------------------------------------------
consensus_11012#3 -----------------------------------------------------------A 1
consensus_11012#4 AGATGCTATGAATACTGCCCTTGGAATGGAAAAAGCAGTCAGTAAATCATTATTAGAACT 286
consensus_11012#7 ------------------------------------------------------------
consensus_11012#1 AGATGCTATGAATACTGCCCTTGGAATGGAAAAAGCAGTCAGTAAATCATTATTAGAACT 420
consensus_11012#0 ATATATTCACCGAA--TCGAGAGCTAGACAGAATTTCGC-CAAAGAATGTGAAGATGCCA 286
consensus_11012#5 ATATATTCACCGAAG-TCGAGAGCTAGACAGAATTTCGC-CAAAGAATGTGAAGATGCCA 127
consensus_11012#2 ATATATTCACCGAA--TCGAGAGCTAGACAGAATTTCGC-CAAAGAATGTGAAGATGCCA 123
consensus_11012#6 -CNTCGCGGCCANAATTCGGCACGAGGATCGAATCTAACACAATGAACAAGACAGTTTC- 58
consensus_11012#3 GCAACATGAGTAAA--TCAAGAGCCAGACAGAATTTCGC-CAAAGAATGTGAAGATGCCA 58
consensus_11012#4 TCATGAAGTAGCTTCAAAGAACAATGATCCAGCATTGGCAGATTTTATTGAAAGTGAATT 346
consensus_11012#7 ------------------------------------------------------------
consensus_11012#1 TCATGAAGTAGCTTCAAAGAACAATGATCCAGCATTGGCAGATTTTATTGAAAGTGAATT 480
consensus_11012#0 TCAATAAACAAATCAACATGGAACTACAAGCTGCTTACGATTATATGGCATTCTTCACTT 346
consensus_11012#5 TCAATAAACAAATCAACATGGAACTACAAGCTGCTTACGATTATATGGCATTCTTCACTT 187
consensus_11012#2 TCAATAAACAAATCAACATGGAACTACAAGCTGCTTACGATTATATGGCATTCTTCACTT 183
consensus_11012#6 ----CAAACAAATCAACATGGAACTACAAGCTGCTTACGATTATATGGCATTCTTCACTT 114
consensus_11012#3 TCAATAAACAAATCAACATGGAACTACAAGCTGCTTACGATTATATGGCATTCTTCACTT 118
consensus_11012#4 TCTTCATGAACAAGAAGATGCAATCAAACAATTCGCC-GATTATTTAA---------CCG 396
consensus_11012#7 ----------------GATGCAATCAAACAATTCGCCCGATTATTTAAG--------CCG 36
consensus_11012#1 TCTTCATGAACAAGAAGATGCAATCAAACAATTCGCC-GATTATTTAA---------CCG 530
*** ** * * * * ****** * *
consensus_11012#0 ACTTCGATCGAGATGATGTATCATTTCCGAAAGCAGCTGAATTCTTTCGAAAAGCTTCAC 406
consensus_11012#5 ACTTCGATCGAGATGATGTATCATTTCCGAAAGCAGCTGAATTCTTTCGAAAAGCTTCAC 247
consensus_11012#2 ACTTCGATCGAGATGATGTATCATTTCCGAAAGCAGCTGAATTCTTTCGAAAAGCTTCAC 243
consensus_11012#6 ACTTCGATCGAGATGATGTATCATTTCCGAAAGCAGCTGAATTCTTTCGAAAAGCTTCAC 174
consensus_11012#3 ACTTCGATCGAGATGATGTATCATTTCCGAAAGCAGCTGAATTCTTTCGAAAAGCTTCAC 178
consensus_11012#4 AGACACAACGAGTCGGTAAAGGACTTG-GAGAATATCT--ATTCGATAAATTAACATTAA 453
consensus_11012#7 AGACACAACGAGTCGGTAAAGGACTTG-GAGAATATCT--ATTCGATAAATTAACATTAA 93
consensus_11012#1 AGACACAACGAGTCGGTAAAGGACTTG-GAGAATATCT--ATTCGATAAATTAACATTAA 587
* * **** * * * * ** ** * * ** **** * * * * * *
consensus_11012#0 ATGAGG-AACGTGAACATGCAGAGAATTTGGCGAAATATCAGA-ACAAACGTGGTGGGTC 464
consensus_11012#5 ATGAGG-AACGTGAACATGCAGAGAATTTGGCGAAATATCAGA-ACAAACGTGGTGG-TC 304
consensus_11012#2 ATGAGG-AACGTGAACATGCAGAGAATTTGGCGAAATATCAGA-ACAAACGTGGTGG-TC 300
consensus_11012#6 ATGAGG-AACGTGAACATGCAGAGAATTTGGCGAAATATCAGA-ACAAACGTGGTGG-TC 231
consensus_11012#3 ATGAGG-AACGTGAACATGCAGAGAATTTGGCGAAATATCAGA-ACAAACGTGGTGG-TC 235
consensus_11012#4 ATGAAT--AGAAAGATTCTAATTACCTATTATAAA-TGACACTACTAATTATCATGA-TT 509
consensus_11012#7 ATGATCTAAGAAGAATTCTAATTACCTATTATAAACTGACACTCATAATTATCATGA-TT 152
consensus_11012#1 ATGAAT--AGAAAGATTCTAATTACCTATTATAAA-TGACACTACTAATTATCATGA-TT 643
**** * * * * * ** * ** ** * ** *
consensus_11012#0 GTGTTCAGTACAGTGATATCAAGTGTCCGACTAAGGTAGAATTCAGTGATTTGGTAGATG 524
consensus_11012#5 GTGTTCAGTACAGTGATATCAAGTGTCCGACTAAGGTAGAATTCAGTGATTTGGTAGATG 364
consensus_11012#2 GTGTTCAGTACAGTGATATCAAGTGTCCGACTAAGGTAGAATTCAGTGATTTGGTAGATG 360
consensus_11012#6 GTGTTCAGTACAGTGATATCAAGTGTCCGACTAAGGTAGAATTCAGTGATTTGGTAGATG 291
consensus_11012#3 GTGTTCAGTACAGTGATATCAAGTGTCCGACTAAGGTAGAATTCAGTGATTTGGTAGATG 295
consensus_11012#4 TCATTTGATAC-AGGATAGT---TT---GTTTTTAA--AAATTA-TTATTTG--TAAATA 557
consensus_11012#7 TCATTTGATACCATTATAGT---TTTCCGTTTTCAG--AAATTAATTACTTTGCCAAATA 207
consensus_11012#1 TCATTTGATAC-AGGATAGT---TT---GTTTTTAA--AAATTA-TTATTTG--TAAATA 691
** *** *** * * * **** * ** * **
consensus_11012#0 CGATGAACACTGCATTGTCAATGGAGAAGGCAGTGAATGACTCATTATTGAAACTTCATG 584
consensus_11012#5 CGATGAACACTGCATTGTCAATGGAGAAGGCAGTGAATGACTCATTATTGAAACTTCATG 424
consensus_11012#2 CGATGAACACTGCATTGTCAATGGAGAAGGCAGTGAATGACTCATTATTGAAACTTCATG 420
consensus_11012#6 CGATGAACACTGCATTGTCAATGGAGAAGGCAGTGAATGACTCATTATTG---------- 341
consensus_11012#3 CGATGAACACTGCATTGTCAATGGAGAAGGCAGTGAATGACTCATTACTGAAACTTCATG 355
consensus_11012#4 TATCAAATATACTTCAGCAATATAATCATAT----------------------------- 588
consensus_11012#7 TATCAAATA---GCTAGCCTTAAGGCC--------------------------------- 231
consensus_11012#1 TATCAAATATACTTCAGCAATATAATCATA------------------------------ 721
** * *
consensus_11012#0 AAATAGCTGCAAAGAACAATGATCCAGCACTAACCGATTTCATTGAGAGTCAGTATTTGC 644
consensus_11012#5 AAATAGCTACAAAGAACAATGATCCAGCACTGACCAATTTCATTGAGAGTCAGTATTTGC 484
consensus_11012#2 AAATAGCTGCAAAGAACAATGATCCAGCACTAACCGATTTCATTGAGAGTCAGTATTTGC 480
consensus_11012#6 ------------------------------------------------------------
consensus_11012#3 AAATAGCTGCAAAGAACAATGATCCAGCACTAACCGATTTCATTGAGAGTCAGTATTTGC 415
consensus_11012#4 ------------------------------------------------------------
consensus_11012#7 ------------------------------------------------------------
consensus_11012#1 ------------------------------------------------------------
consensus_11012#0 ATGAACAAGAAGATGCAATCAAACAATTTGCTGACTATGTGACAGAGACNATCGAAGTTG 704
consensus_11012#5 ATGAACAAGAAGATGCAATCAAACAATTTGCTGACTATGTGA------------------ 526
consensus_11012#2 ATGAACAAGAAGATGCAATCAAACAATTTGCTGACTATGTGACAGAGACAAATCGAGTTG 540
consensus_11012#6 ------------------------------------------------------------
consensus_11012#3 ATGAACAAGAAAATGCAATCAAACAATTTGCTGACTATGTGACAGAGACAAATCGAGTTG 475
consensus_11012#4 ------------------------------------------------------------
consensus_11012#7 ------------------------------------------------------------
consensus_11012#1 ------------------------------------------------------------
consensus_11012#0 GAAGTGGACTTGGTCA-TATCTATTCGANCAGATGACACTNGAAGAATAA-CACGAATTC 762
consensus_11012#5 ------------------------------------------------------------
consensus_11012#2 GAAGTGGACTTGGTCAATATCTATTCGGCAAGATGACACTGAAAGAATAAACACGAATTC 600
consensus_11012#6 ------------------------------------------------------------
consensus_11012#3 GAAATGGACTTGGTCAATATCTATTCGACAAGATGACACTGAAAGAATAAACACGACTTC 535
consensus_11012#4 ------------------------------------------------------------
consensus_11012#7 ------------------------------------------------------------
consensus_11012#1 ------------------------------------------------------------
consensus_11012#0 ATTCAGTTGAACTGTTCATTCATTGGTATGTGCCCTATTTATCTCTGCATTCGTNTTTAT 822
consensus_11012#5 ------------------------------------------------------------
consensus_11012#2 ATTCAGTTGAACTGTTCATTCATTGTTATGTGCCTTATTTTATTCTCTGCATTCGTTNTT 660
consensus_11012#6 ------------------------------------------------------------
consensus_11012#3 ATTCAGTTGAACTGTTCATTCATTGTTATGTGCCTTATTTTATTCTCTGCATTCGTTTTT 595
consensus_11012#4 ------------------------------------------------------------
consensus_11012#7 ------------------------------------------------------------
consensus_11012#1 ------------------------------------------------------------
consensus_11012#0 CAGTAATGA--------- 831
consensus_11012#5 ------------------
consensus_11012#2 TATCAGTAAATGAGT--- 675
consensus_11012#6 ------------------
consensus_11012#3 TATCAGTAAATGAGTTAT 613
consensus_11012#4 ------------------
consensus_11012#7 ------------------
consensus_11012#1 ------------------
|
| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||