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These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_11173#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 28 consensus length = 1172 fasta sequence
[CCTGGAATACCTTGACGGCGTGATTGTTCAGTCCGCGTGACACCAGAAATGAAGAAACACAAAGTTAGAGCTGGTAATGTGGGAGCTATTCAGGCAGCTGAGTCCTTTGCGGTAATTTCAGAGGACAAGAAACCTACTTTAGATTGCAGCCAATGGCCATTATTGTTGAAAAATGTTCATCTTATGAA-TGTACGCGAGTGTCATTTCGAGGCTGACACAACAGGCTACTCACCTTTACACAGACCTCTGGATGAATACATCAAGAGTGGAGTCATCAACCTCGACAAGCCATGCAACCCATCATCTCATGAAGTTGTTGCGTGGGTGAAAAGAGCCCTTGGAGTCAACAAAACCGGTCATAGTGGCACTTTAGACCCCAAAGTTTCTGGTTGTCTTATTGTCTGTATCGATCGTGCTACTAGGCTTGTAAAGTCTCAGCAAAGTGCTGGTAAAGAGTATGTATGCATATTTAGACTTCACGAGTCCGTGGATGAGATCAAAAAGATACAAAAAGCTGTAGAAGGGCTGACTGGAGCATTATTCCAGAGACCCCCGCTAGTTGCTGCTGTTAAGCGCCAGCTCAGAGTTCGTACAATATACGAGTGTAAACTTTTGGAGTATG-AAAAAAGTAAAAATTTGGGGCTAATAATGGTGCGCTGTGAGGCTGGAACGTATGTTCGGACGCTTTGTGTGCATTTGGGTTTGCTTTTAGGTTGTGGAGGTGTTATGGAGGAACTTAGGCGGTCTAAAACTGGTTTTATGTCTGAAAGGGACAATCTGGTTACTATGCATGATATACTAGATGCTAAGTGGCTTTATGACAATAGGCGAGATGAGACTTACTTGCGTCGTGTTATTATGCCTCTCGAAAAGCTGCTGATCAAACACAAACGGATTATGCTTAAAGATACTGCCGTGTGCGCTATTTGCTTCGGTGCGAAACTTATGTTGCCTGGCGTACTCCGTTACGACAACGACATCAATGTCAACGATGAAATAGTCCTAATGACTACCAAAGGCGAAGCCGTAGCTCTTGCTGTTGCACTAATGACTACTGCAACAATCGCGACGTGTGACCATGTATTAGTCGCAAAACTGAAAAGAGTGATAATGGAGCGTGATCTCTATCCTCGCCAGTGGGGTCGTGGTCCTGTTTCCATGGAAAGGAAAAA]
[+] EMBL CD159412 [CCTGGAATACCTTGACGGCGTGATTGCTCATTCCACGGGACACCATAAATGGAGAAACACAAAGATAGAGCTGGTAATGCGGGAGCTATTCAGGCAGCTGAGTCCTTTGCGGTAATTTCAGAGGACAAGAACACTACTTTAGATTGCACCCTTTGGCCATTATTGTTGAAAAATGTTCATCTTATGAACTGTACTCGAGTGGCATTTCGAGGCTGACACAACAGGCTACTCACCTTTACACAGACCTCTGGATGAATACATTAAGAGGGGAGTCATCA ]
[-] EMBL CD199456 [ ACCTTGACGGCGTGATTGTTCAGTCCGCGTGACNCCAGAAATGAAGAAACACAAAGTTAGAGCTGGTAATGTGGGAGCTATTCAGGCAGCTGAGTCCTTTGCGGTAATTTCAGAGGACAAGAAACCTACTTTAGATTGCAGCCAATGGCCATTATTGTTGAAAAATGTTCATCTTATGAA TGTACGCGAGTGTCATTTCGAGGCTGACACAACAGGCTACTCACCTTTACACAGATCTCTGGATGAATACATCAAGAGTGGAGTCATCAACCTC ]
[-] EMBL CD199394 [ gACCTTGACGGCGTGATCGTTCAGTCCGCGTGACACCAGAAATGAAGAAACACAAAGTTAGAGCTGGTAATGTGGGAGCTATTCAGGCAGCTGAGTCCTTTGCGGTAATTTCAGAGGACAAGAAACCTACTNTAGATTGCAGCCAATGGCCATTATTGTTGAAAAATGTTCATCTTATGAA TGTACGCGAGTGTCATTTCGAGGCTGACACAACAGGCTACTCACCTTTACACAGACCTCTGGATGAATACATCAAGAGTGGAGTCATCAACCTC ]
[-] EMBL CD199420 [ ACCTTGACGGCGTGATTGTTCAGTCCGCGTGACNCCAGAAATGAAGAAACACAAAGTTAGAGCTGGTAATGTGGGAGCTACTCAGGCAGCTGAGTCCTTTGCGGTAATTTCAGAGGACAAGAAACCTACTTTAGATTGCAGCCAATGGCCATTATTGTTGAAAAATGTTCATCTTATGAA TGTACGCGAGTGTCATTTCGAGGCTGACACAACAGGCTACTCACCTTTACACAGACCTCTGGATGAATACATCAAGAGTGGAGTCATCAACCTC ]
[+] EMBL CD185873 [ AGTCCGCGTGACACCAGAAATGAAGAAACACAAAGTTAGAGCTGGTAATGTGGGAGCTATTCAGGCAGCTGAGTCCTTTGCGGTAATTTCAGAGGACAAGAAACCTACTTTAGATTGCAGCCAATGGCCATTATTGTTGAAAAATGTTCATCTTATGAA TGTACGCGAGTGTCATTTCGAGGCTGACACAACAGGCTACTCACCTTTACACAGACCTCTGGATGAATACATCAAGAGTGGAGTCATCAACCTCGACAAGCCATGCAACCCATCATCTCATGAAGTTGTTGCGTGGGTGAAAAGAGCCCTTGGAGTCAACAAAACCGGTCATAGTGGCACTTTAGACCCCAAAGTTTCTGGTTGTCTTATTGTCTGTATCGATCGTGCTACTAGGCTTGTAAAGTCTCAGCAAAGTGCTGGTAAAGAGTATGTATGCATATTTAGACTTCGCGAGTCCGTGGATGAGATCAAAAAGATACAAAAAGCTGTAGAAGGGCTGACTGGAGCATTATTCCAGAGACCCCCGCTAGTTGCTGCTGT ]
[+] EMBL CD138208 [ AGAAACACAAAGTTAGAGCTGGTAATGTGGGAGCTATTCAGGCAGCTGAGTCCTTTGCGGTAATTTCAGAGGACAAGAAACCTACTTTAGATTGCAGCCAATGGCCATTATTGTTGAAAAATGTTCATCTTATGAA TGTACGCGAGTGTCATTTCGAGGCTGACACAACAGGCTACTCACCTTTACACAGACCTCTGGATGAATACATCAAGAGTGGAGTCATCAACCTCGACAAGCCATGCAACCCATCATCTCATGAAGTTGTTGCGTGGGTGAAAAGAGCCCTTGGAGTCAACAAAACCGGTCATAGTGGCACTTTAGACCCCAAAGTTTCTGGTTGTCTTATTGTCTGTATCGATCGTGCTACTA ]
[+] EMBL CD153655 [ ACAACAGGCTACTCACCTTTACACAGACCTCTGGATGAATACATCAAGAGTGGAGTCATCAACCTCGACAAGCCATGCAACCCATCATCTCATGAAGTTGTTGCGTGGGTGAAAAGAGCCCTTGGAGTCAACAAAACCGGTCATAGTGGCACTTTAGACCCCAAAGTTTCTGGTTGTCCTATTGTCTGTATCGATCGTGCTACTAGGCTTGTAAAGTCTCAGCAAAGTGCTGGTAAAGAGTATGTATGCATATTTAGACTTCACGAGTCCGTGGATGAGATCAAAAAGATACAAAAAGCTGTAGAAGGGCTGACTGGAGCATTATTCCAGAGACCCCCGCTAGTTGCTGCTGTTAAGCGCCAGCTCGGAGTTCGTACAATATACGAGTGTAAACTTTTGGAGTATG AAAAAAGTAAAAATTTGGGGCTAATAATGGTGCGCTGTGAGGCTGGAACGTATGTTCGGACGCTTTGTGTGCATTTGGGTTTGCTTTTAAGTTGTGGAGG ]
[+] EMBL CD156679 [ TGAATACATCAAGAGTGGAGTCATCAACCTCGACAAGCCATGCAACCCATCATCTCATGAAGTTGTTGCGTGGGTGAAAAGAGCCCTTGGAGTCAACAAAACCGGTCATAGTGGCACTTTAGACCCCAAAGTTTCTGGTTGTCTTATTGTCTGTATCGATCGTGCTACTAGGCTTGTAAAGTCTCAGCAAAGTGCTGGTAAAGAGTATGTATGCATATTTAGACTTCACGAGTCCGTGGATGAGATCAAAAAGATACAAAAAGCTGTAGAAGGGCTGACTGGAGCATTATTCCAGAGACCCCCGCTAGTTGCTGCTGTTAAGCGCCAGCTCAGAGCTCGTACAATATACGAGTGTAAACTTTTGGAGTATG AAAAAAGTAAAAATTTGGGGCTAATAATGGTGCGCTGT ]
[-] EMBL CD156592 [ GAATACATCAAGAGTGGAGTCATCAACCTCGACAAGCCATGCAACCCATCATCTCATGAAGTTGTTGCGTGGGTGAAAAGAGCCCTTGGAGTCAACAAAACCGGTCATAGTGGCACTTTAGACCCCAAAGTTTCTGGTTGTCTTATTGTCTGTATCGATCGTGCTACTAGGCTTGTAAAGTCTCAGCAAAGTGCTGGTAAAGAGTATGTATGCATATTTAGACTTCACGAGTCCGTGGATGAGATCAAAAAGATACAAAAAGCTGTAGAAGGGCTGACTGGAGCATTATTCCAGAGACCCCCGCTAGTTGCTGCTGTTAAGCGCCAGCTCAGAGTTCGTACAATATACGAGTGTAAACTTTTGGAGTATG AAAAAAGTAAAAATTTGGGGCTAATAATGGTGCGCTGTG ]
[+] EMBL CD144268 [ ACATCAAGAGTGGAGTCATCAACCTCGACAAGCCATGCAACCCATCATCTCATGAAGTTGTTGCGTGGGTGAAAAGAGCCCTTGGAGTCAACAAAACCGGTCATAGTGGCACTTTAGACCCCAAAGTTTCTGGTTGTCTTATTGTCTGTATCGATCGTGCTACTAGGCTTGTAAAGTCTCAGCAAAGTGCTGGTAAAGAGTATGTATGCATATTTAGACTTCACGAGTCCGTGGATGAGATCAAAAAGATACAAAAAGCTGTAGAAGGGCTGACTGGAGCATTATTCCAGAGACCCCCGCTAGTTGCTGCTGTTAAGCGCCAGCTCAGAGTTCGTACAATATACGAGTGTAAACTTTTGGAGTATG AAAAAGGTAAAAATTTGGGGCTAATAATGGTGCGCTGTGAGGCTGGAACGTATGTTCNGACGCTNTGTGTGCATTTGGGTTTGCTT ]
[+] EMBL CD164637 [ acacgagacCATCAAGAGTGGAGTCATCAACCTCGACAAGCCATGCAACCCATCATCTCATGAAGTTGTTGCGTGGGTGAAAAGAGCCCTTGGAGTCAACAAAACCGGTCATAGTAGCACTTTAGACCCCAAAGTTTCTGGTTGTCTTATTGTCTGTATCGATCGTGCTACTAGGCTTGTAAAGTCTCAGCAAAGTGCTGGTAAAGAGTATGTATGCATATTTA ]
[+] EMBL CD148778 [ GGAGTCATCAACCTCGACAAGCCATGCAACCCATCATCTCATGAAGTTGTTGCGTGGGTGAAAAGAGCCCTTGGAGTCAACAAAACCGGTCATAGTGGCACTTTAGACCCCAAAGTTTCTGGTTGTCTTATTGTCTGTATCGATCGTGCTACTAGGCTTGTAAAGTCTCAGCAAAGTGCTGGTAAAGAGTATGTATGCATATTTAGACTTCACGAGTCCGTGGATGAGATCAAAAAGATACAAAAAGCTGTAGAAGGGCTGACTGGAGCATTATT ]
[+] EMBL CD187883 [ CTCGACAAGCCATGCAACCCATCATCTCATGAAGTTGTTGCGTGGGTGAAAAGAGCCCTTGGAGTCAACAAAACCGGTCATAGTGGCACTTTAGACCCCAAAGTTTCTGGTTGTCTTATTGTCTGTATCGATCGTGCTACTAGGCTTGTAAAGTCTCAGCAAAGTGCTGGTAAAGAGTATGTATGCATATTTAGACTTCACGAGTCCGTGGATGAGATCAAAAAGATACAAAAAGCTGTAGAAGGGCTGACTGGAGCATTATTCCAGAGACCCCCGCTAATTGCTGCTGTTAAGCGCCAGCTCAGAGTTCGTACAATATACGAGTGTAAACTTTTGGAGTATGAAAAAAAGTAAAAATTTGGGGCTAATAATGGTGCGCTGTGAGGCTGGAACGTATGTTCGGACGCTTTGTGTGCATTTGGGTTTGCTTTTAGGTTGTGG ]
[-] EMBL CD157422 [ CATGCAACCCATCATCTCATGAAGTTGTTGCGTGGGTGAAAAGAGCCCTTGGAGTCAACAAAACCGGTCATAGTGGCACTTTAGACCCCAAAGTTTCTGGTTGTCTTATTGTCTGTATCGATCGTGCTACTAGGCTTGTAAAGTCTCAGCAAAGTGCTGGTAAAGAGTATGTATGCATATTTAGACTTCACGAGTCCGTGGATGAGATCAAAAAGATACAAAAAACTGTAGAAGGGCTGACTGGAGCATTATTCCAGAGACCCCCGCTAGTTACTGCTGTTAAGCGCCAGCTCAGAGTTCGTACAATATACGAGTGTAAACTTTTGGAGTATG AAAAAAGTAAAAATTTGGGGCTAATAATGGTGCGCTGTGAGGCTGGAACGTATGTTCGGACGCTTTGTGTGCATTTGGGTTTGCTTTTAGGTTGTGGAGGTGTTAT ]
[+] EMBL CD123704 [ GTTGCGTGGGTGAAAAGAGCCCTTGGAGTCAACAAAACCGGTCATAGTGGCACTTTAGACCCCAAAGTTTCTGGTTGTCTTATTGTCTGTATCGATCGTGCTACTAGGCTTGTAAAGTCTCAGCAAAGTGCTGGTAAAGAGTATGTATGCATATTTAGACTTCACGAGTCCGTGGATGAGATCAAAAAGATACAAAAAGCTGTAGAAGGGCTGACTGGAGCATTATTCCAGAGACCCCCGCTAGTTGCTGC ]
[-] EMBL CD194048 [ GGGTGAAAAGAGCCTTTGGAGTCAACAAAACCGGTCATAGTGGCACTTTAGACCCCAAAGTTTCTGGTTGTCTTATTGTCTGTATCGATCGTGCTACTAGGCTTGTAAAGTCTCAGCAAAGTGCTGGTAAAGAGTATGTATGCATATTTAGACTTCACGAGTCCGTGGATGAGATCAAAAAGATACAAAAAGCTGTAGAAGGGCTGACTGGAGCATTATTCCAGAGACCCCCGCTAGTTGCTGCTGTTAAGCGCCAGCTCAGAGTTCGTACAATATACGAGTGTAAACTTTTGGAGTATG AAAAAAGTAAAAATTTGGGGCTAATAATGGTGCGCTGTG ]
[+] EMBL CD090634 [ GTGAAAAGAGCCCTTGGAGTCAACAAAACCGGTCATAGTGGCACTTTAGACCCCAAAGTTTCTGGTTGTCTTATTGTCTGTATCGATCGTGCTACTAGGCTTGTAAAGTCTCAGCAAAGTGCTGGTAAAGAGTATGTATGCATATTTAGACTTCATGAGTCCGTGGATGAGATCAAAAAGATACAAAAAGCTGTAGAAGGGCTGACTGGAGCATTATTCCAGAGACCCCCGCTAGTTGCTGCTGTTAAGCGCCAGCTCAGAGTTCGTACAATATACGAGTGTAAACTTTTGGAGTATG AAAAAAGTAAAAATTTGGGGCTAATAATGGTGCGCTGTGAGGCTGGAACGT TGTggaggt ]
[+] EMBL CD125702 [ AACCGGTCATAGTGGCACTTTAGACCCCAAAGTTTCTGGTTGTCTTATTGTCTGTATCGATCGTGCTACTAGGCTTGTAAAGTCTCAGCAAAGTGCTGGTAAAGAGTATGTATGCATATTTAGACTTCACGAGTCCGTGGATGAGATC AAAAGAT ]
[+] EMBL CD149756 [ GGCACTTTAGACCCCAAAGTTTCTGGTTGTCTTATTGTCTGTATCGATCGTGCTACTAGGCTTGTAAAGTCTCAGCAAAGTGCTGGTAAAGAGTATGTATGCATATTTAGACTTCACGAGTCCGTGGATGAGATCAAAAAGATACAAAAAGCTGTAGAAGGGCTGACTGGAGCATTATTCCAGAGACCCCCGCTAGTTGCTGCTGTTAAGCGCCAGCTCAGAGTTCGTACAATATACGAGTGTAAACTTTTGGAGTATG AAAAAAGTAAAAATTTGGGGCTAATAATGGTGCGCTGTGAGGCTGGAACGTATGTTCGGACGCTTTGTGTGCATTTGGGTTTGCTTTTAAGTTGTGGAGGTGTTATGGAAGAACTTAAGCGGTCTAAAACTGGTTTTATGTCTGAAAGGGACAATCTGGGTACTATGCATGATATACTACATGCTCAGTGGCCTTA ]
[+] EMBL CD191271 [ gtaACTAGGCTTGTAAAGTCTCAGCAAAGTGCTGGTAAAGAGGCTGTATGCATATTTAGACTTCACGAGTCCGTGGATGAGATCAAAAAGATACAAAAAGCTGTAGAAGGGCTGACTGGAGCATTATTCCAGAGACCCCCGCTAGTTGCTGCTGTTAAGCGCCAGCTCAGAGTTCGTACAATATACGAGGGTGAACTTTTGGAGTATG AAAAAAGTAA ]
[-] EMBL CD200319 [ CTGCTGTTAAGCGCCAGCTCAGAGTTCGTACAATATACGAGTGTAAACTTTTGGAGTATG AAAAAAGTAAAAATTTGGGGCTAATAATGGTGCGCTGTGAGGCTGGAACGTATGTTCGGACGCTTTGTGTGCATTTGGGTT ]
[+] EMBL CD159713 [ TGGGGCTAATAATGGTGCGCTGTGAGGCTGGAACGTATGTTCGGACGCTTTGTGTGCATTTGGGTTTGCTTTTAGGTTGTGGAGGTGTTATGGAGGAACTTAGGCGGTCTAAAACTGGTTTTATGTCTGAAAGGGACAATCTGGTTACTATGCATGATATACTAGATGCTAAGTGGCTTTATGACAATAGGCGAGATGAGACTTACTTGCGTCGTGTTATTATGCCTCTCGAAAAGCTGCTGATCAAACACAAACGGATTATGCTTAAAGATACTGCCGTGTGCGCTATTTGCTTCGGTGCGAAACTTATGTTGCCTGGCGTACTCCGTTACGACAACGACATTCATGTCCACGAT ]
[+] EMBL CD159698 [ TGGGGCTAATAATGGTGCGCTGTGAGGCTGGAACGTATGTTCGGACGCTTTGTGTGCATTTGGGTTTGCTTTTAGGTTGTGGAGGTGTTATGGAGGAACTTAGGCGGTCTAAAACTGGTTTTATGTCTGAAAGGGACAATCTGGTTACTATGCATGATATACTAGATGCTAAGTGGCTTTATGACAATAGGCGAGATGAGACTTACTTGCGTCGTGTTATTATGCCTCTCGAAAAGCTGCTGATCAAACACAAACGGATTATGCTTAAAGATACTGCCGTGTGCGCTATTTGCTTCGGTGCGAAACTTATGTTGCCTGGCGTACTCCGTTACGACAACGACATCAATGTTCACGATGAAATAGTCCTAATGACTACCANAGGCGAAGCCGTAGCTCTTGCTGTTGCACTTATGACTACTGCGACca ]
[+] EMBL AI976858 [ AATAATGGTGCGCTGTGAGGCTGGAACGTATGTTCGGACGCTTTGTGTGCATTTGGGTTTGCTTTTAGGTTGTGGAGGTGTTATGGAGGAACTTAGGCGGTCTAAAACTGGTTTTATGTCTGAAAGGGACAATCTGGTTACTATGCATGATATACTAGATGCTAAGTGGCTTTATGACAATAGGCGAGATGAGACTTACTTGCGTCGTGTTATTATGCCTCTCGAAAAGCTGCTGATCAAACACAAACGGATTATGCTTAAAGATACTGCCGTGTGCGCTATTTGCTTCGGTGCGAAACTTATGTTGCCTGGCGTACTCCGTTACGACAACGACATCAATGTCAACGATGAAATAGTCCTAATGACTACCAAAGGCGAAGCCGTAGCTCTTGCTGTTGCACTAATGACTACTGCAACAATCGCGACGTGTGACCATGTATTAGTCGCAAAACTGAAAAGAGTGATAATGGAGCGTGATCTCTATCCTCGCCAGTGGGGTCGTGGTCCTGTTTC ]
[-] EMBL CD123132 [ ATGGAGGAACTTAGGCGGTCTAAAACTGGTTTTATGTCCGAAAGGGACAATCTGGTTACTATGCATGATATACTAGATGCTAAGTGGCTTTATGACAATAGGCGAGATGAGACTTACTTGCGTCGTGTTATTATGCCTCTCGAAAAGCTGCTGATCAAACACAAACGGATTATGCTTAAAGATACTGCCGTGTGCGCTATTTGCTTCGGTGCGAAACTTATGTTGCCTGGCGTACTCCGTTACGACAACGACATCAATGTCAACGATGAAATAGTCCTAATGACTACCAAAGGCGAAGCCGTAGCTCTTGCTGTTGCACTAA ]
[+] EMBL CD091026 [ TGGTTACTATGCATGATGTACTAGATGCTAAGTGGCTTTATGACAATAGGCGAGATGAGACTTACTTGCGTCGTGTTATTATGCCTCTCGAAAAGCTGCTGATCAAACACAAACGGATTATGCTTAAAGATACTGCCGTGTGCGCTATTTGCTTCGGTGCGAAGCTTATGTTGCCTGGCGTACTCCGTTACGACAACGACATCAATGTCAACGATGAAATAGTCCTAATGACTACCAAAGGCGAAGCCGTAGCTCTTGCTGTTGCACTAATGACTACTGCAACAA ]
[+] EMBL CD091025 [ TGGTTACTATGCATGATATACTAGATGCTAAGTGGCTTTATGACAGTAGGCGAGATGAGACTTACTTGCGTCGTGTTATTATGCCTCTCGAAAAGCTGCTGATCAAACACAAACGGATTATGCTTAAAGATACTGCCGTGTGCGCTATTTGCTTCGGTGCGAAACTTATGTTGCCTGGCGTACTCCGTTACGACAACGACATCAATGTCAACGATGAAATAGTCCTAATGACTACCAAAGGCGAAGCCGTAGCTCTTGCTGTTGCACTAATGACTACTGCAACAA ]
[-] EMBL CD147954 [ ATGTCAACGATGAAATAGTCCTAATGACTACCAAAGGCGAAGCCGTAGCTCTTGCTGTTGCACTAATGACTACTGCAACAATCGCGACGTGTGACCATGGATTAGTCGCAAAACTGAAAAGAGTGATAATGGAGCGTGATCTCTATCCTCGCCAGTGGGGTCGTGGTCCTGTTTCCATGGAAAGGAAAAA]
consensusID : consensus_11173#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 679 fasta sequence
[GGCTTTATGACAATAGGCGAGATGAGACTTACTTGCGTCGTGTTATTATGCCTCTCGAAAAGCTGCTGATCAAATACAAACGGATTATGCTTAAAGATACTGCCGTAAGTTCCTTTACATATAGAAGCATGTGTCGATTAGGTGTGCGCTATTTGCTTCGGTGCGAAACTTATGTTGCCTGGCGTACTCCGTTACGACAACGACATCAATGTCAACGATGAAATAGTCCTAATGACTACCAAAGGCGAAGCCGTAGCTCTTGGTAGGTCATTTCAGACTAACATCAACTTCAAGCTGTTGCACTAATGACTACTGCAACAATCGCGACGTGTGACCATGGATTAGTCGCAAAACTGAAAAGAGTGATAATGGAGCGTGATCTCTATCCTCGCCAGTGGGGTCGTGGTCCTGTTTCCATGGAAAGGAAAAAACTCGTTGCCCAAGGTTTACTTAAAAAGTTTTCCAAATCTGACGGTGTGACGAATACTTCGAACTCTGTTGGATTGAAAACCAAGATGGAAGTAAGTGAAGCTGGGGAGGCTGTAACGTAAGTTCACTACTTTCCTTCGACATCTTTGATAGAAGGCGAATTAAAGCACCAAATCCTTCCGACTCAAGTGACGATGAAATGGCAAGGTAAGTTTAGAATCCAATAGCTGTGATGATCAAGCATATGTCT]
[+] EMBL CD084293 [GGCTTTATGACAATAGGCGAGATGAGACTTACTTGCGTCGTGTTATTATGCCTCTCGAAAAGCTGCTGATCAAATACAAACGGATTATGCTTAAAGATACTGCCGTAAGTTCCTTTACATATAGAAGCATGTGTCGATTAGGTGTGCGCTATTTGCTTCGGTGCGAAACTTATGTTGCCTGGCGTACTCCGTTACGACAACGACATCAATGTCAACGATGAAATAGTCCTAATGACTACCAAAGGCGAAGCCGTAGCTCTTGGTAGGTCATTTCAGACTAACATCAACTTCAAGCTGTTGCACTAATGACTACTGCAACAATCGCGACGTGTGACCATGGATTAGTCGCAAAACTGAAAAGAGTGATAATGGAGCGTGATCTCTATCCTCGCCAGTGGGGTCGTGGTCCTGTTTCCATGGAAAGGAAAAAACTCGTTGCCCAAGGTTTACTTAAAAAGTTTTCCAAATCTGACGGTGTGACGAATACTTCGAACTCTGTTGGATTGAAAACCAAGATGGAAGTAAGTGAAGC ]
[-] EMBL CD119290 [ CACTAATGACTACTGCAACAATCGCGACGTGTGACCATGGATTAGTCGCAAAACTGAAAAGAGTGATAATGGAGCGTGATCTCTATCCTCGCCAGTGGGGTCGTGGTCCTGTTTCCATGGAAAGGAAAAAACTCGTTGCCCAAGGTTTACTTAAAAAGTTTTCCAAATCTGACGGTGTGACGAATACTTCGAACTCTGTTGGATTGAAAACCAAGATGGAAGTAAGTGAAGCTGGGGAGGCTGTAACGTAAGTTCACTACTTTCCTTCGACATCTTTGATAGAAGGCGAATTAAAGCACCAAATCCTTCCGACTCAAGTGACGATGAAATGGCAAGGTAAGTTTAGAATCCAATAGCTGTGATGATCAAGCATATGTCT]
[+] EMBL CD147995 [ AAAACTGAAAAGAGTGATAATGGAGCGTGATCTCTATCCTCGCCAGTGGGGTCGTGGTCCTGTTTCCATGGAAAGGAAAAAACTCGTTGCCCAAGGTTTACTTAAAAAGTTTTCCAAATCTGACGGTGTGACGAATACTTCGAACTCTGTT ]
[-] EMBL CD148116 [ AAACTGAAAAGAGTGATAATGGAGCGTGATCTCTATCCTCGCCAGTGGGGTCGTGGTCCTGTTTCCATGGAAAGGAAAAAACTCGTTGCCCAAGGTTTACTTAAAAAGTTTTCCAAATCTGACGGTGTGACGAATACTTCGAACTCTGTTG ]
[-] EMBL CD148079 [ AAACTGAAAAGAGTGATAATGGAGCGTGATCTCTATCCTCGCCAGTGGGGTCGTGGTCCTGTTTCCATGGAAAGGAAAAAACTCGTTGCCCAAGGTTTACTTAAAAAGTTTTCCAAATCTGACGGTGTGACGAATACTTCGAACTCTGTTG ]
consensusID : consensus_11173#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 469 fasta sequence
[AATCTTCTATCCAGTTCGGCAACACTGTTGAAAACTTTTCCTGGTGCCGATAGTAGTGTGATGTCTCTGTAGTTTTCACATTTGCTCAGATCCCCTTTCTTTGATATCTTGGTGAGGTATCCTTGTTTCCAGTCTATCGGCACTTGTTCTTCCTCCCAAATCTTCCTGAATAGAATGTGGGAGCTATTCAGGCAGCTGAGTCCTTTGCGGTAATTTCAGAGGACAAGAAACCTACTTTAGATTGCAGCCAATGGCCATTATTGTTGAAAAATGTTCATCTTATGAATGTACGCGAGTGTCATTTCGAGGCTGACACAACAGGCTACTCACCTTTACACAGACCTCTGGATGAATACATCAAGTTTGTCTGAACCATCTCTGTAACTTTTAAGGAGTGGAGTCATCAACCTCGACAAGCCATGCAACCCATCATCTCATGAAGTTGTTGCGTGGGTGAAAAGAGCCCTTG]
[+] EMBL CD184929 [AATCTTCTATCCAGTTCGGCAACACTGTTGAAAACTTTTCCTGGTGCCGATAGTAGTGTGATGTCTCTGTAGTTTTCACATTTGCTCAGATCCCCTTTCTTTGATATCTTGGTGAGGTATCCTTGTTTCCAGTCTATCGGCACTTGTTCTTCCTCCCAAATCTTCCTGAATAGAATGTGGGAGCTATTCAGGCAGCTGAGTCCTTTGCGGTAATTTCAGAGGACAAGAAACCTACTTTAGATTGCAGCCAATGGCCATTATTGTTGAAAAATGTTCATCTTATGAATGTACGCGAGTGTCATTTCGAGGCTGACACAACAGGCTACTCACCTTTACACAGACCTCTGGATGAATACATCAAGTTTGTCTGAACCATCTCTGTAACTTTTAAGGAGTGGAGTCATCAACCTCGACAAGCCATGCAACCCATCATCTCATGAAGTTGTTGCGTGGGTGAAAAGAGCCCTTG]
consensusID : consensus_11173#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 299 fasta sequence
[CGGCGTGATTGTTCAGTCCGCGTGACACCAGAAATGAAGAAACACAAAGTTAGGGCTGGTAATGTGGGAGCTATTCAGGCAGCTGAGTCCTTTGCGGTAATTTCAGAGGACAAGAAACCTACTTTAGATTGCAGCCAATGGCCATTATTGTTGAAAAATGTTCATCTTATGAATGTGCGCGAGTGTCATTTCGAGGCTGACACAACAGGCTACTCACCTTTACACAGACCTCTGGATGAATACATCAAGTTTGTCTGAACCATCTCTGTAACTTTTAAGGAGTGGAGTCATCAACCTCG]
[+] EMBL CD161316 [CGGCGTGATTGTTCAGTCCGCGTGACACCAGAAATGAAGAAACACAAAGTTAGGGCTGGTAATGTGGGAGCTATTCAGGCAGCTGAGTCCTTTGCGGTAATTTCAGAGGACAAGAAACCTACTTTAGATTGCAGCCAATGGCCATTATTGTTGAAAAATGTTCATCTTATGAATGTGCGCGAGTGTCATTTCGAGGCTGACACAACAGGCTACTCACCTTTACACAGACCTCTGGATGAATACATCAAGTTTGTCTGAACCATCTCTGTAACTTTTAAGGAGTGGAGTCATCAACCTCG]
[+] EMBL CD159398 [ GATTGTTCAGTCCGCGTGACACCAGAAATGCAGAAACACAAAGTTAGAGCTGGTAATGTGGGAGCTATTCAGGCAGCTGAGTCCTTTGCGGTAATTTCAGAGGACAAGAAACCTACTTTAGATTGCAGCCAATGGCCATTATTGTTGAAAAATGTTCATCTTATGAATGTACGCGAGTGTCATTTCGAGGCTGACACAACAGGCTACTCACCTTTACACAGACCTCTGGATGAATACATCAAGTTTGTCTGAACCATCTCTGTAACTTTTAAGGAGTGGAGTCA ]
consensusID : consensus_11173#4 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 175 fasta sequence
[TCGTGGTCCCGTTTCCATGGAAAGGAAAAAACTCGTTGCCCAAGGTTTACTTAAAAAGTTTTCCAAATCTGACGGTGTGACGAATACTTCGAACTCTGTTGGGTAGGTGATCAATGTTTGATAACGCGTACTTCAGATTGAAAACCAAGATGGAAGTAAGTGAAGCCGGGGAGGG]
[+] EMBL CD087387 [TCGTGGTCCCGTTTCCATGGAAAGGAAAAAACTCGTTGCCCAAGGTTTACTTAAAAAGTTTTCCAAATCTGACGGTGTGACGAATACTTCGAACTCTGTTGGGTAGGTGATCAATGTTTGATAACGCGTACTTCAGATTGAAAACCAAGATGGAAGTAAGTGAAGCCGGGGAGGG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_11173#2 ------------------------------------------------------------
consensus_11173#3 ------------------------------------------------------------
consensus_11173#0 ------------------------------------------------------------
consensus_11173#1 GGCTTTATGACAATAGGCGAGATGAGACTTACTTGCGTCGTGTTATTATGCCTCTCGAAA 60
consensus_11173#4 ------------------------------------------------------------
consensus_11173#2 ------------------------------------------------------------
consensus_11173#3 ------------------------------------------------------------
consensus_11173#0 ------------------------------------------------------------
consensus_11173#1 AGCTGCTGATCAAATACAAACGGATTATGCTTAAAGATACTGCCGTAAGTTCCTTTACAT 120
consensus_11173#4 ------------------------------------------------------------
consensus_11173#2 -----------AATCTTCTATCCAGTTCGGCAACACTGTTGAAAACTTTTCCTGGTGCCG 49
consensus_11173#3 ------------------------------------------------------------
consensus_11173#0 ------------------------------------------------------------
consensus_11173#1 ATAGAAGCATGTGTCGATTAGGTGTGCGCTATTTGCTTCGGTGCGAAACTTATGTTGCCT 180
consensus_11173#4 ------------------------------------------------------------
consensus_11173#2 ATAGTAGTGTGATGTCTCTGTAGTTTTCACATTTGCTCAGATCCCCTTTCTTTGATATCT 109
consensus_11173#3 ------------------------------------------------------------
consensus_11173#0 ---------------------------------------------CCTGGAATACCTTGA 15
consensus_11173#1 GGCGTACTCCGTTACGACAACGACATCAATGTCAACGATGAAATAGTCCTAATGACTACC 240
consensus_11173#4 ------------------------------------------------------------
consensus_11173#2 TGGTGAGGTATCCTTGTTTCCAGTCTATCGGCACTTGTTCTTCCTC-CCAAATCTTCCTG 168
consensus_11173#3 CGGCGTGATTGTTCAGTCCGCGTGACACCAGAAATGAAGAAACAC-----AAAGTTAGGG 55
consensus_11173#0 CGGCGTGATTGTTCAGTCCGCGTGACACCAGAAATGAAGAAACAC-----AAAGTTAGAG 70
consensus_11173#1 AAAGGCGAAGCCGTAGCTCTTGGTAGGTCATTTCAGACTAACATCAACTTCAAGCTGTTG 300
consensus_11173#4 ------------------------------------------------------------
consensus_11173#2 AATAGAATGTGGGAGCTATTCAGGCAGCTGAGTCCTTTGCGGTAATTTCAGAGGACAAGA 228
consensus_11173#3 CTGGTAATGTGGGAGCTATTCAGGCAGCTGAGTCCTTTGCGGTAATTTCAGAGGACAAGA 115
consensus_11173#0 CTGGTAATGTGGGAGCTATTCAGGCAGCTGAGTCCTTTGCGGTAATTTCAGAGGACAAGA 130
consensus_11173#1 CACTAATGACTACTGCAACAATCGCGACGTGTGACCATGGATTAGTCGCAAAACTGAAAA 360
consensus_11173#4 ------------------------------------------------------------
consensus_11173#2 AACCTACTTTAGATTGCAGCCAATGGCCATTATTGTTGAAAAATGTTCATCTTATGAATG 288
consensus_11173#3 AACCTACTTTAGATTGCAGCCAATGGCCATTATTGTTGAAAAATGTTCATCTTATGAATG 175
consensus_11173#0 AACCTACTTTAGATTGCAGCCAATGGCCATTATTGTTGAAAAATGTTCATCTTATGAATG 190
consensus_11173#1 GAGTGATAATGGAGCGTGATCTCTATCCTCGCCAGTGGGGTCGTGGTCCTGTTTCCATGG 420
consensus_11173#4 ----------------------------------------TCGTGGTCCCGTTTCCATGG 20
** ** ** * *
consensus_11173#2 TACGCGAGTG--TCATT--TCGAGGCTGACACAACAGGCTACTCACCTTTACACAGACCT 344
consensus_11173#3 TGCGCGAGTG--TCATT--TCGAGGCTGACACAACAGGCTACTCACCTTTACACAGACCT 231
consensus_11173#0 TACGCGAGTG--TCATT--TCGAGGCTGACACAACAGGCTACTCACCTTTACACAGACCT 246
consensus_11173#1 AAAGGAAAAAACTCGTTGCCCAAGGTTTACTTAAAAAGTTTTCCAAATCT-----GACGG 475
consensus_11173#4 AAAGGAAAAAACTCGTTGCCCAAGGTTTACTTAAAAAGTTTTCCAAATCT-----GACGG 75
* * ** ** * *** * ** ** * * * ** * * ***
consensus_11173#2 CTGGATGAATACATCAAGTTTGTCTGAACCATCTCTGTAACTTTTAAGGAGTGGAGTCAT 404
consensus_11173#3 CTGGATGAATACATCAAGTTTGTCTGAACCATCTCTGTAACTTTTAAGGAGTGGAGTCAT 291
consensus_11173#0 CTGGATGAATACATCAAG-------------------------------AGTGGAGTCAT 275
consensus_11173#1 TGTGACGAATACTTCGAACTCTGTTGGATTGAAAACCAAGATGGAAGTAAGTGAAGCTGG 535
consensus_11173#4 TGTGACGAATACTTCGAACTCTGTTGGGTAGGTGATCAATGTTTGATAACGCGTACTTC- 134
** ****** ** * * * *
consensus_11173#2 CAACCTCGACAAGCCATGCAACCCATCATCTCATGAAGTTGTTGCGTGGGTGAAAAGAGC 464
consensus_11173#3 CAACCTCG---------------------------------------------------- 299
consensus_11173#0 CAACCTCGACAAGCCATGCAACCCATCATCTCATGAAGTTGTTGCGTGGGTGAAAAGAGC 335
consensus_11173#1 GGAGGCTGT-AACGTAAGTTCACTACTTTCCTTCGACATCTTTGATAGAAGGCGAATTAA 594
consensus_11173#4 --AGATTGA-AAACCAAGATGGAAGTAA----GTGAAGCCGGGGAGGG------------ 175
* *
consensus_11173#2 CCTTG------------------------------------------------------- 469
consensus_11173#3 ------------------------------------------------------------
consensus_11173#0 CCTTGGAGTCAACAAAACCGGTCATAGTGGCACTTTAGACCCCAAAGTTTCTGGTTGTCT 395
consensus_11173#1 AGCACCAAATCCTTCCGACTCAAGTGACGATGAAATGGCAAGGTAAGTTTAGAATCCAAT 654
consensus_11173#4 ------------------------------------------------------------
consensus_11173#2 ------------------------------------------------------------
consensus_11173#3 ------------------------------------------------------------
consensus_11173#0 TATTGTCTGTATCGATCGTGCTACTAGGCTTGTAAAGTCTCAGCAAAGTGCTGGTAAAGA 455
consensus_11173#1 AGCTGTGATGATCAAGCATATGTCT----------------------------------- 679
consensus_11173#4 ------------------------------------------------------------
consensus_11173#2 ------------------------------------------------------------
consensus_11173#3 ------------------------------------------------------------
consensus_11173#0 GTATGTATGCATATTTAGACTTCACGAGTCCGTGGATGAGATCAAAAAGATACAAAAAGC 515
consensus_11173#1 ------------------------------------------------------------
consensus_11173#4 ------------------------------------------------------------
consensus_11173#2 ------------------------------------------------------------
consensus_11173#3 ------------------------------------------------------------
consensus_11173#0 TGTAGAAGGGCTGACTGGAGCATTATTCCAGAGACCCCCGCTAGTTGCTGCTGTTAAGCG 575
consensus_11173#1 ------------------------------------------------------------
consensus_11173#4 ------------------------------------------------------------
consensus_11173#2 ------------------------------------------------------------
consensus_11173#3 ------------------------------------------------------------
consensus_11173#0 CCAGCTCAGAGTTCGTACAATATACGAGTGTAAACTTTTGGAGTATGAAAAAAGTAAAAA 635
consensus_11173#1 ------------------------------------------------------------
consensus_11173#4 ------------------------------------------------------------
consensus_11173#2 ------------------------------------------------------------
consensus_11173#3 ------------------------------------------------------------
consensus_11173#0 TTTGGGGCTAATAATGGTGCGCTGTGAGGCTGGAACGTATGTTCGGACGCTTTGTGTGCA 695
consensus_11173#1 ------------------------------------------------------------
consensus_11173#4 ------------------------------------------------------------
consensus_11173#2 ------------------------------------------------------------
consensus_11173#3 ------------------------------------------------------------
consensus_11173#0 TTTGGGTTTGCTTTTAGGTTGTGGAGGTGTTATGGAGGAACTTAGGCGGTCTAAAACTGG 755
consensus_11173#1 ------------------------------------------------------------
consensus_11173#4 ------------------------------------------------------------
consensus_11173#2 ------------------------------------------------------------
consensus_11173#3 ------------------------------------------------------------
consensus_11173#0 TTTTATGTCTGAAAGGGACAATCTGGTTACTATGCATGATATACTAGATGCTAAGTGGCT 815
consensus_11173#1 ------------------------------------------------------------
consensus_11173#4 ------------------------------------------------------------
consensus_11173#2 ------------------------------------------------------------
consensus_11173#3 ------------------------------------------------------------
consensus_11173#0 TTATGACAATAGGCGAGATGAGACTTACTTGCGTCGTGTTATTATGCCTCTCGAAAAGCT 875
consensus_11173#1 ------------------------------------------------------------
consensus_11173#4 ------------------------------------------------------------
consensus_11173#2 ------------------------------------------------------------
consensus_11173#3 ------------------------------------------------------------
consensus_11173#0 GCTGATCAAACACAAACGGATTATGCTTAAAGATACTGCCGTGTGCGCTATTTGCTTCGG 935
consensus_11173#1 ------------------------------------------------------------
consensus_11173#4 ------------------------------------------------------------
consensus_11173#2 ------------------------------------------------------------
consensus_11173#3 ------------------------------------------------------------
consensus_11173#0 TGCGAAACTTATGTTGCCTGGCGTACTCCGTTACGACAACGACATCAATGTCAACGATGA 995
consensus_11173#1 ------------------------------------------------------------
consensus_11173#4 ------------------------------------------------------------
consensus_11173#2 ------------------------------------------------------------
consensus_11173#3 ------------------------------------------------------------
consensus_11173#0 AATAGTCCTAATGACTACCAAAGGCGAAGCCGTAGCTCTTGCTGTTGCACTAATGACTAC 1055
consensus_11173#1 ------------------------------------------------------------
consensus_11173#4 ------------------------------------------------------------
consensus_11173#2 ------------------------------------------------------------
consensus_11173#3 ------------------------------------------------------------
consensus_11173#0 TGCAACAATCGCGACGTGTGACCATGTATTAGTCGCAAAACTGAAAAGAGTGATAATGGA 1115
consensus_11173#1 ------------------------------------------------------------
consensus_11173#4 ------------------------------------------------------------
consensus_11173#2 ---------------------------------------------------------
consensus_11173#3 ---------------------------------------------------------
consensus_11173#0 GCGTGATCTCTATCCTCGCCAGTGGGGTCGTGGTCCTGTTTCCATGGAAAGGAAAAA 1172
consensus_11173#1 ---------------------------------------------------------
consensus_11173#4 ---------------------------------------------------------
|
| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||