cluster # 1606

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Schistosoma mansoni
cluster # 1606 cluster # 1606 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_1606#0 length = 860 sequences # 1

consensus_1606#1 length = 295 sequences # 1

consensusID : consensus_1606#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 860
fasta sequence

                              [TGAATAATGACAGTATCAGTAGATGATGGCGAAAATAACTTCATTGAAAAAAACAGAAGTGAAAATATCAGAAAAATTACGAGTATAGCAAAATCATGGGGAATTAATGGAAAAATGACAATGCGTAAAATCAGATTGATCATACTTCTCTGTTTTTTCTAGATGAACTTGGTTTACTACTTGTCGAAAAGTCCTCAACATATCCCGTACGTAAGAATCTTTTGGAAGCATTTCATTTATTGTATCAATTGAAAGCATCCGATGAAACTTATCCACTAGTTATTATCGAAAAAACCATCACTTGTTTGACTTTATCACTCACACATGAATATAAACTTGAAGCATTGAAGATACTACTGTTAATAGCGTTAGTGTTATTGAAACTAAACTTCTGAATTATCAAGTCAGGAGGAGAAAGGATTGCGAAATATATTAAGATTGCAAGGTTGTGATGCTACACTCAATCTATTGTTTAAGCTGAGGAAGTTTTGAAACCTTACTGTTTAAATCTGTTGATCAGAATTTCAGAATCTTTGAGGGGAAAGATTGCTAATTCTGAATATACGGACTCGNNCTAGCACTTCTGCTACACTACAAAGTCAAAAAATTTANTATCAATACCTTAACTATTACTAATTATTGGGAGTCCCTCGGCTGAAAAATGTCCATGGTTCCAAATTTTCCGTTTTATCTGTAATCCAAGATTCAAATTAATTTCCCACCATTGTTTTTGGTTGTAATTCCACGCAAAACTTTGGCTTGGCTTCAAATGGGTCCGAACACCCGGTTTTCAGGGAAATATTTTTAAAGTTTCACACCTTCCCATTTATTGGGTTTTGCCCCTTTTGTTTGGTTTGGAA]

[+] EMBL CD080073             [TGAATAATGACAGTATCAGTAGATGATGGCGAAAATAACTTCATTGAAAAAAACAGAAGTGAAAATATCAGAAAAATTACGAGTATAGCAAAATCATGGGGAATTAATGGAAAAATGACAATGCGTAAAATCAGATTGATCATACTTCTCTGTTTTTTCTAGATGAACTTGGTTTACTACTTGTCGAAAAGTCCTCAACATATCCCGTACGTAAGAATCTTTTGGAAGCATTTCATTTATTGTATCAATTGAAAGCATCCGATGAAACTTATCCACTAGTTATTATCGAAAAAACCATCACTTGTTTGACTTTATCACTCACACATGAATATAAACTTGAAGCATTGAAGATACTACTGTTAATAGCGTTAGTGTTATTGAAACTAAACTTCTGAATTATCAAGTCAGGAGGAGAAAGGATTGCGAAATATATTAAGATTGCAAGGTTGTGATGCTACACTCAATCTATTGTTTAAGCTGAGGAAGTTTTGAAACCTTACTGTTTAAATCTGTTGATCAGAATTTCAGAATCTTTGAGGGGAAAGATTGCTAATTCTGAATATACGGACTCGNNCTAGCACTTCTGCTACACTACAAAGTCAAAAAATTTANTATCAATACCTTAACTATTACTAATTATTGGGAGTCCCTCGGCTGAAAAATGTCCATGGTTCCAAATTTTCCGTTTTATCTGTAATCCAAGATTCAAATTAATTTCCCACCATTGTTTTTGGTTGTAATTCCACGCAAAACTTTGGCTTGGCTTCAAATGGGTCCGAACACCCGGTTTTCAGGGAAATATTTTTAAAGTTTCACACCTTCCCATTTATTGGGTTTTGCCCCTTTTGTTTGGTTTGGAA]




>consensus_1606#0
TGAATAATGACAGTATCAGTAGATGATGGCGAAAATAACTTCATTGAAAAAAACAGAAGT
GAAAATATCAGAAAAATTACGAGTATAGCAAAATCATGGGGAATTAATGGAAAAATGACA
ATGCGTAAAATCAGATTGATCATACTTCTCTGTTTTTTCTAGATGAACTTGGTTTACTAC
TTGTCGAAAAGTCCTCAACATATCCCGTACGTAAGAATCTTTTGGAAGCATTTCATTTAT
TGTATCAATTGAAAGCATCCGATGAAACTTATCCACTAGTTATTATCGAAAAAACCATCA
CTTGTTTGACTTTATCACTCACACATGAATATAAACTTGAAGCATTGAAGATACTACTGT
TAATAGCGTTAGTGTTATTGAAACTAAACTTCTGAATTATCAAGTCAGGAGGAGAAAGGA
TTGCGAAATATATTAAGATTGCAAGGTTGTGATGCTACACTCAATCTATTGTTTAAGCTG
AGGAAGTTTTGAAACCTTACTGTTTAAATCTGTTGATCAGAATTTCAGAATCTTTGAGGG
GAAAGATTGCTAATTCTGAATATACGGACTCGNNCTAGCACTTCTGCTACACTACAAAGT
CAAAAAATTTANTATCAATACCTTAACTATTACTAATTATTGGGAGTCCCTCGGCTGAAA
AATGTCCATGGTTCCAAATTTTCCGTTTTATCTGTAATCCAAGATTCAAATTAATTTCCC
ACCATTGTTTTTGGTTGTAATTCCACGCAAAACTTTGGCTTGGCTTCAAATGGGTCCGAA
CACCCGGTTTTCAGGGAAATATTTTTAAAGTTTCACACCTTCCCATTTATTGGGTTTTGC
CCCTTTTGTTTGGTTTGGAA

consensusID : consensus_1606#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 295
fasta sequence

                              [ATTCGTCACGAGGAATAACTGACAGTATCAGTAGATGATGGCGAAAATAACTTCATTGAAAAAAACAGAAGTGAAAATATCAGAAAAATTACGAGTATAGCAAAATCATGGGGAATTAATGGAAAAATGACAATGCATGAACTTGGTTTACTACTTGTCGAAAAGTCCTCAACATATCCCGTACGTAAGAATCTTTTGGAAGCATTTCATTTATTGTATCAATTGAAAGCATCCGATGAAACTTATCCACTAGTTATTATCGAAAAAACCATCACTTGTNTGACTTTATCACTCA]

[+] EMBL CD077671             [ATTCGTCACGAGGAATAACTGACAGTATCAGTAGATGATGGCGAAAATAACTTCATTGAAAAAAACAGAAGTGAAAATATCAGAAAAATTACGAGTATAGCAAAATCATGGGGAATTAATGGAAAAATGACAATGCATGAACTTGGTTTACTACTTGTCGAAAAGTCCTCAACATATCCCGTACGTAAGAATCTTTTGGAAGCATTTCATTTATTGTATCAATTGAAAGCATCCGATGAAACTTATCCACTAGTTATTATCGAAAAAACCATCACTTGTNTGACTTTATCACTCA]




>consensus_1606#1
ATTCGTCACGAGGAATAACTGACAGTATCAGTAGATGATGGCGAAAATAACTTCATTGAA
AAAAACAGAAGTGAAAATATCAGAAAAATTACGAGTATAGCAAAATCATGGGGAATTAAT
GGAAAAATGACAATGCATGAACTTGGTTTACTACTTGTCGAAAAGTCCTCAACATATCCC
GTACGTAAGAATCTTTTGGAAGCATTTCATTTATTGTATCAATTGAAAGCATCCGATGAA
ACTTATCCACTAGTTATTATCGAAAAAACCATCACTTGTNTGACTTTATCACTCA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_1606#0      -----------TGAATAA-TGACAGTATCAGTAGATGATGGCGAAAATAACTTCATTGAA 48
consensus_1606#1      ATTCGTCACGAGGAATAACTGACAGTATCAGTAGATGATGGCGAAAATAACTTCATTGAA 60
                                  ****** *****************************************

consensus_1606#0      AAAAACAGAAGTGAAAATATCAGAAAAATTACGAGTATAGCAAAATCATGGGGAATTAAT 108
consensus_1606#1      AAAAACAGAAGTGAAAATATCAGAAAAATTACGAGTATAGCAAAATCATGGGGAATTAAT 120
                      ************************************************************

consensus_1606#0      GGAAAAATGACAATGCGTAAAATCAGATTGATCATACTTCTCTGTTTTTTCTAGATGAAC 168
consensus_1606#1      GGAAAAATGACAATGC--------------------------------------ATGAAC 142
                      ****************                                      ******

consensus_1606#0      TTGGTTTACTACTTGTCGAAAAGTCCTCAACATATCCCGTACGTAAGAATCTTTTGGAAG 228
consensus_1606#1      TTGGTTTACTACTTGTCGAAAAGTCCTCAACATATCCCGTACGTAAGAATCTTTTGGAAG 202
                      ************************************************************

consensus_1606#0      CATTTCATTTATTGTATCAATTGAAAGCATCCGATGAAACTTATCCACTAGTTATTATCG 288
consensus_1606#1      CATTTCATTTATTGTATCAATTGAAAGCATCCGATGAAACTTATCCACTAGTTATTATCG 262
                      ************************************************************

consensus_1606#0      AAAAAACCATCACTTGTTTGACTTTATCACTCACACATGAATATAAACTTGAAGCATTGA 348
consensus_1606#1      AAAAAACCATCACTTGTNTGACTTTATCACTCA--------------------------- 295
                      ***************** ***************                           

consensus_1606#0      AGATACTACTGTTAATAGCGTTAGTGTTATTGAAACTAAACTTCTGAATTATCAAGTCAG 408
consensus_1606#1      ------------------------------------------------------------
                                                                                  

consensus_1606#0      GAGGAGAAAGGATTGCGAAATATATTAAGATTGCAAGGTTGTGATGCTACACTCAATCTA 468
consensus_1606#1      ------------------------------------------------------------
                                                                                  

consensus_1606#0      TTGTTTAAGCTGAGGAAGTTTTGAAACCTTACTGTTTAAATCTGTTGATCAGAATTTCAG 528
consensus_1606#1      ------------------------------------------------------------
                                                                                  

consensus_1606#0      AATCTTTGAGGGGAAAGATTGCTAATTCTGAATATACGGACTCGNNCTAGCACTTCTGCT 588
consensus_1606#1      ------------------------------------------------------------
                                                                                  

consensus_1606#0      ACACTACAAAGTCAAAAAATTTANTATCAATACCTTAACTATTACTAATTATTGGGAGTC 648
consensus_1606#1      ------------------------------------------------------------
                                                                                  

consensus_1606#0      CCTCGGCTGAAAAATGTCCATGGTTCCAAATTTTCCGTTTTATCTGTAATCCAAGATTCA 708
consensus_1606#1      ------------------------------------------------------------
                                                                                  

consensus_1606#0      AATTAATTTCCCACCATTGTTTTTGGTTGTAATTCCACGCAAAACTTTGGCTTGGCTTCA 768
consensus_1606#1      ------------------------------------------------------------
                                                                                  

consensus_1606#0      AATGGGTCCGAACACCCGGTTTTCAGGGAAATATTTTTAAAGTTTCACACCTTCCCATTT 828
consensus_1606#1      ------------------------------------------------------------
                                                                                  

consensus_1606#0      ATTGGGTTTTGCCCCTTTTGTTTGGTTTGGAA 860
consensus_1606#1      --------------------------------