cluster # 1893

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Schistosoma mansoni
cluster # 1893 cluster # 1893 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_1893#0 length = 201 sequences # 1

consensus_1893#1 length = 189 sequences # 1

consensusID : consensus_1893#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 201
fasta sequence

                              [CAAAGTCTCCTTTATTTGTTTTCTTCTTGGACACACAGCTACATTTACAATTCTCCAGCTTCCTTTTGCAGGTAGCTGTAGCTACCTGCAGTAGTACAATTAAACTACTCCTCTCCGCAACAATGTGAAGGGAAAATCACTTTGTGCTATTTTCTGGCCATGATTTGTTAAACGATGCGATTGGATACAAAATCTTGCACT]

[+] EMBL CD119491             [CAAAGTCTCCTTTATTTGTTTTCTTCTTGGACACACAGCTACATTTACAATTCTCCAGCTTCCTTTTGCAGGTAGCTGTAGCTACCTGCAGTAGTACAATTAAACTACTCCTCTCCGCAACAATGTGAAGGGAAAATCACTTTGTGCTATTTTCTGGCCATGATTTGTTAAACGATGCGATTGGATACAAAATCTTGCACT]




>consensus_1893#0
CAAAGTCTCCTTTATTTGTTTTCTTCTTGGACACACAGCTACATTTACAATTCTCCAGCT
TCCTTTTGCAGGTAGCTGTAGCTACCTGCAGTAGTACAATTAAACTACTCCTCTCCGCAA
CAATGTGAAGGGAAAATCACTTTGTGCTATTTTCTGGCCATGATTTGTTAAACGATGCGA
TTGGATACAAAATCTTGCACT

consensusID : consensus_1893#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 189
fasta sequence

                              [CAAAGTCTCCCTTATTTGTTTTTTTCTTGGACACACAGCTACATTTACATTCTCCAGCTTCCTTTGCAGGTAGCTGTAGCTACCTGCAGGAGTACATTAACTACTCCTCTCCAGCAACAATGTGAAGGGAAACCATTTGTGCTATTTTATGGCCATGAAGGCAAAACAAAACAAATAAAAACAAAATCT]

[+] EMBL CD119303             [CAAAGTCTCCCTTATTTGTTTTTTTCTTGGACACACAGCTACATTTACATTCTCCAGCTTCCTTTGCAGGTAGCTGTAGCTACCTGCAGGAGTACATTAACTACTCCTCTCCAGCAACAATGTGAAGGGAAACCATTTGTGCTATTTTATGGCCATGAAGGCAAAACAAAACAAATAAAAACAAAATCT]




>consensus_1893#1
CAAAGTCTCCCTTATTTGTTTTTTTCTTGGACACACAGCTACATTTACATTCTCCAGCTT
CCTTTGCAGGTAGCTGTAGCTACCTGCAGGAGTACATTAACTACTCCTCTCCAGCAACAA
TGTGAAGGGAAACCATTTGTGCTATTTTATGGCCATGAAGGCAAAACAAAACAAATAAAA
ACAAAATCT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_1893#0      CAAAGTCTCCTTTATTTGTTTTCTTCTTGGACACACAGCTACATTTACAATTCTCCAGCT 60
consensus_1893#1      CAAAGTCTCCCTTATTTGTTTTTTTCTTGGACACACAGCTACATTTACA-TTCTCCAGCT 59
                      ********** *********** ************************** **********

consensus_1893#0      TCCTTTTGCAGGTAGCTGTAGCTACCTGCAGTAGTACAATTAAACTACTCCTCTCC-GCA 119
consensus_1893#1      TCCTTT-GCAGGTAGCTGTAGCTACCTGCAGGAGTACATT--AACTACTCCTCTCCAGCA 116
                      ****** ************************ ****** *  ************** ***

consensus_1893#0      ACAATGTGAAGGGAAAATCACTTTGTGCTATTTTCTGGCCATGATTTGTTAAACGATGCG 179
consensus_1893#1      ACAATGTGAAGGGAAA--CCATTTGTGCTATTTTATGGCCATGAAG-GCAAAACAAAACA 173
                      ****************  *  ************* *********   *  **** *  * 

consensus_1893#0      ATTGGATACAAAATCTTGCACT 201
consensus_1893#1      AATAAAAACAAAATCT------ 189
                      * *  * *********