cluster # 3964

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Schistosoma mansoni
cluster # 3964 cluster # 3964 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_3964#0 length = 399 sequences # 1

consensus_3964#1 length = 390 sequences # 1

consensusID : consensus_3964#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 399
fasta sequence

                              [TATATATATATATGTGTATATGATTACTACATCAAAATGAATATGAAAAAATGAAGATGAACATCAAACAGGTGTATGATGAGCGAAAATTGACAAATATGCATTTCAGACACAAATACATAGACATGGAAACTAATCTAATGGAACAAATCAAAAATATATCAAACTTTATGGACAGCACATGTAACGAAAGAATATCACAATGTGTGCACTATATATATATATATATATATGCAGAGACATACTTATCAACCAGATTCAGAACATAATCTTCTACAGGAATTCAAAATTATTGTCTGGTGAAAATATAACACAAATAATGTTGCGCAATTTGTTTATTACATCTAACAAAGTAAGCAAATGATCAGTCTATACTAGAACAATATGAGGAATGAAAAT]

[+] EMBL AI975270             [TATATATATATATGTGTATATGATTACTACATCAAAATGAATATGAAAAAATGAAGATGAACATCAAACAGGTGTATGATGAGCGAAAATTGACAAATATGCATTTCAGACACAAATACATAGACATGGAAACTAATCTAATGGAACAAATCAAAAATATATCAAACTTTATGGACAGCACATGTAACGAAAGAATATCACAATGTGTGCACTATATATATATATATATATATGCAGAGACATACTTATCAACCAGATTCAGAACATAATCTTCTACAGGAATTCAAAATTATTGTCTGGTGAAAATATAACACAAATAATGTTGCGCAATTTGTTTATTACATCTAACAAAGTAAGCAAATGATCAGTCTATACTAGAACAATATGAGGAATGAAAAT]




>consensus_3964#0
TATATATATATATGTGTATATGATTACTACATCAAAATGAATATGAAAAAATGAAGATGA
ACATCAAACAGGTGTATGATGAGCGAAAATTGACAAATATGCATTTCAGACACAAATACA
TAGACATGGAAACTAATCTAATGGAACAAATCAAAAATATATCAAACTTTATGGACAGCA
CATGTAACGAAAGAATATCACAATGTGTGCACTATATATATATATATATATATGCAGAGA
CATACTTATCAACCAGATTCAGAACATAATCTTCTACAGGAATTCAAAATTATTGTCTGG
TGAAAATATAACACAAATAATGTTGCGCAATTTGTTTATTACATCTAACAAAGTAAGCAA
ATGATCAGTCTATACTAGAACAATATGAGGAATGAAAAT

consensusID : consensus_3964#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 390
fasta sequence

                              [AAATTGACAAATATGCATTTCAGACACAAATACATAGACATGGAAACTAATCTAATGGAACAAATCAAAAATATATCAAACTTTATGGTCAGTACATGTAACGAAAGAATATCACAATGTGTGCAATATATATATATATATATATATATATATATGCAGAGACATAATTATTAACCAGATTCAGAAAATAATCTTAAACAGGAATTCAAAATTATTGTCTAGAGAAAATATAACAGAAATAATGTTTGTAAATTTTTTATTACATCTAACAAAGTAAGCAAATGATCAGTCTCCTACTAGAACAATATGAGGAATGAAAATTAACGATGAAAAAGTTCATCAGCAACGTTTATACATAGATGCACAGTAATACATGTATATTATGGATAG]

[+] EMBL AA999493             [AAATTGACAAATATGCATTTCAGACACAAATACATAGACATGGAAACTAATCTAATGGAACAAATCAAAAATATATCAAACTTTATGGTCAGTACATGTAACGAAAGAATATCACAATGTGTGCAATATATATATATATATATATATATATATATGCAGAGACATAATTATTAACCAGATTCAGAAAATAATCTTAAACAGGAATTCAAAATTATTGTCTAGAGAAAATATAACAGAAATAATGTTTGTAAATTTTTTATTACATCTAACAAAGTAAGCAAATGATCAGTCTCCTACTAGAACAATATGAGGAATGAAAATTAACGATGAAAAAGTTCATCAGCAACGTTTATACATAGATGCACAGTAATACATGTATATTATGGATAG]




>consensus_3964#1
AAATTGACAAATATGCATTTCAGACACAAATACATAGACATGGAAACTAATCTAATGGAA
CAAATCAAAAATATATCAAACTTTATGGTCAGTACATGTAACGAAAGAATATCACAATGT
GTGCAATATATATATATATATATATATATATATATGCAGAGACATAATTATTAACCAGAT
TCAGAAAATAATCTTAAACAGGAATTCAAAATTATTGTCTAGAGAAAATATAACAGAAAT
AATGTTTGTAAATTTTTTATTACATCTAACAAAGTAAGCAAATGATCAGTCTCCTACTAG
AACAATATGAGGAATGAAAATTAACGATGAAAAAGTTCATCAGCAACGTTTATACATAGA
TGCACAGTAATACATGTATATTATGGATAG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_3964#0      TATATATATATATGTGTATATGATTACTACATCAAAATGAATATGAAAAAATGAAGATGA 60
consensus_3964#1      ------------------------------------------------------------
                                                                                  

consensus_3964#0      ACATCAAACAGGTGTATGATGAGCGAAAATTGACAAATATGCATTTCAGACACAAATACA 120
consensus_3964#1      --------------------------AAATTGACAAATATGCATTTCAGACACAAATACA 34
                                                **********************************

consensus_3964#0      TAGACATGGAAACTAATCTAATGGAACAAATCAAAAATATATCAAACTTTATGGACAGCA 180
consensus_3964#1      TAGACATGGAAACTAATCTAATGGAACAAATCAAAAATATATCAAACTTTATGGTCAGTA 94
                      ****************************************************** *** *

consensus_3964#0      CATGTAACGAAAGAATATCACAATGTGTGCACTATATATATATATATATATAT------- 233
consensus_3964#1      CATGTAACGAAAGAATATCACAATGTGTGCAATATATATATATATATATATATATATATA 154
                      ******************************* *********************       

consensus_3964#0      -GCAGAGACATACTTATCAACCAGATTCAGAACATAATCTTCTACAGGAATTCAAAATTA 292
consensus_3964#1      TGCAGAGACATAATTATTAACCAGATTCAGAAAATAATCTTAAACAGGAATTCAAAATTA 214
                       *********** **** ************** ********  *****************

consensus_3964#0      TTGTCTGGTGAAAATATAACACAAATAATGTTGCGCAATTTGTTTATTACATCTAACAAA 352
consensus_3964#1      TTGTCTAGAGAAAATATAACAGAAATAATGTT-TGTAAATTTTTTATTACATCTAACAAA 273
                      ****** * ************ **********  * ** ** ******************

consensus_3964#0      GTAAGCAAATGATCAGTCTA-TACTAGAACAATATGAGGAATGAAAAT------------ 399
consensus_3964#1      GTAAGCAAATGATCAGTCTCCTACTAGAACAATATGAGGAATGAAAATTAACGATGAAAA 333
                      *******************  ***************************            

consensus_3964#0      ---------------------------------------------------------
consensus_3964#1      AGTTCATCAGCAACGTTTATACATAGATGCACAGTAATACATGTATATTATGGATAG 390