cluster # 4023

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Schistosoma mansoni
cluster # 4023 cluster # 4023 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_4023#0 length = 203 sequences # 1

consensus_4023#1 length = 186 sequences # 1

consensusID : consensus_4023#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 203
fasta sequence

                              [TAGACAAGGAGAAAACCAGCTCACTATTCTGTTATTACATTATGGGGAGAATAATGGACATCACCACTACATTTAGTAGGTGCACAACTAGGAAAAATTGAGTGTACACTGAGGTACCATGATTTATTTGCAATTTTACAGCAAAGCTTGGTTGAAATGCCATAAATTCCACCCATAGATTAAAGATTAAAATTAACTGTTAT]

[+] EMBL AI026205             [TAGACAAGGAGAAAACCAGCTCACTATTCTGTTATTACATTATGGGGAGAATAATGGACATCACCACTACATTTAGTAGGTGCACAACTAGGAAAAATTGAGTGTACACTGAGGTACCATGATTTATTTGCAATTTTACAGCAAAGCTTGGTTGAAATGCCATAAATTCCACCCATAGATTAAAGATTAAAATTAACTGTTAT]




>consensus_4023#0
TAGACAAGGAGAAAACCAGCTCACTATTCTGTTATTACATTATGGGGAGAATAATGGACA
TCACCACTACATTTAGTAGGTGCACAACTAGGAAAAATTGAGTGTACACTGAGGTACCAT
GATTTATTTGCAATTTTACAGCAAAGCTTGGTTGAAATGCCATAAATTCCACCCATAGAT
TAAAGATTAAAATTAACTGTTAT

consensusID : consensus_4023#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 186
fasta sequence

                              [AATAGACAAAGGAAAGAAAAACCAAGCTCAACTAATTCTGGTTAATTAACATTAATGGGGAGAAATAAATGGACATCACCACTACATTTAGTAGGTGCACAACTAGGAAAAATTGAGTGTTCACTGAGGTACCATGATTTATTTGCATTTTTACAGCAAAGCTTGGTTGAAATACCATAAATTCCA]

[+] EMBL AI026206             [AATAGACAAAGGAAAGAAAAACCAAGCTCAACTAATTCTGGTTAATTAACATTAATGGGGAGAAATAAATGGACATCACCACTACATTTAGTAGGTGCACAACTAGGAAAAATTGAGTGTTCACTGAGGTACCATGATTTATTTGCATTTTTACAGCAAAGCTTGGTTGAAATACCATAAATTCCA]




>consensus_4023#1
AATAGACAAAGGAAAGAAAAACCAAGCTCAACTAATTCTGGTTAATTAACATTAATGGGG
AGAAATAAATGGACATCACCACTACATTTAGTAGGTGCACAACTAGGAAAAATTGAGTGT
TCACTGAGGTACCATGATTTATTTGCATTTTTACAGCAAAGCTTGGTTGAAATACCATAA
ATTCCA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_4023#0      -------TAGACAAGGAGAAAACCAGCTCACT--ATTCTGTT--ATTA-CATTA-TGGGG 47
consensus_4023#1      AATAGACAAAGGAAAGAAAAACCAAGCTCAACTAATTCTGGTTAATTAACATTAATGGGG 60
                              *   ** ** *** * ******    ****** *  **** ***** *****

consensus_4023#0      AGAAT--AATGGACATCACCACTACATTTAGTAGGTGCACAACTAGGAAAAATTGAGTGT 105
consensus_4023#1      AGAAATAAATGGACATCACCACTACATTTAGTAGGTGCACAACTAGGAAAAATTGAGTGT 120
                      ****   *****************************************************

consensus_4023#0      ACACTGAGGTACCATGATTTATTTGCAATTTTACAGCAAAGCTTGGTTGAAATGCCATAA 165
consensus_4023#1      TCACTGAGGTACCATGATTTATTTGCATTTTTACAGCAAAGCTTGGTTGAAATACCATAA 180
                       ************************** ************************* ******

consensus_4023#0      ATTCCACCCATAGATTAAAGATTAAAATTAACTGTTAT 203
consensus_4023#1      ATTCCA-------------------------------- 186
                      ******