cluster # 42

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Schistosoma mansoni
cluster # 42 cluster # 42 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_42#0 length = 544 sequences # 1

consensus_42#1 length = 475 sequences # 1

consensusID : consensus_42#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 544
fasta sequence

                              [AAGAAAACAACAAGAATCTTCTACCGAAAAGTGAAAACTCTATCAAAGAACAGGAAAAATTGAAAATTCTACCACAGCATCCACCATTGGCGATATTGGAAGATTCCATGAACATATCCAATCTTGTGTCAGCATCCCCACTCAGTCATTTTGAAGCGAAAAATAACGTTGACAGAAGGAAGCCTCAAAATATGTCTCCGGGGGACATTAACGCATTCAGAGAAGGTTCAAACATGGCACCTCCAGAGACCTTAAATAAACCATTGTCAATGCATGATAAACTCATTAGTGATCAAATAATTCGGGGAAGGTTTGCCGCAAGCCTAAAAAATGAAATCTGTCAGCCCAAACAGCTTTTAAAGACCTCAATATTTCCACAACTTGAAGTTTTAAATACCAAACATTTAACTGAAGATGACAAAAAGGCACAAAACTATATGTTTACATCAAGTTATCAAGCAGCATACGGAAATAACTCCGGTTTTTACGGGAATACGTACCGACGATTATACCCAATAAGAAGTTCCGAGACTGTTGCAGACCC]

[+] EMBL CD118557             [AAGAAAACAACAAGAATCTTCTACCGAAAAGTGAAAACTCTATCAAAGAACAGGAAAAATTGAAAATTCTACCACAGCATCCACCATTGGCGATATTGGAAGATTCCATGAACATATCCAATCTTGTGTCAGCATCCCCACTCAGTCATTTTGAAGCGAAAAATAACGTTGACAGAAGGAAGCCTCAAAATATGTCTCCGGGGGACATTAACGCATTCAGAGAAGGTTCAAACATGGCACCTCCAGAGACCTTAAATAAACCATTGTCAATGCATGATAAACTCATTAGTGATCAAATAATTCGGGGAAGGTTTGCCGCAAGCCTAAAAAATGAAATCTGTCAGCCCAAACAGCTTTTAAAGACCTCAATATTTCCACAACTTGAAGTTTTAAATACCAAACATTTAACTGAAGATGACAAAAAGGCACAAAACTATATGTTTACATCAAGTTATCAAGCAGCATACGGAAATAACTCCGGTTTTTACGGGAATACGTACCGACGATTATACCCAATAAGAAGTTCCGAGACTGTTGCAGACCC]




>consensus_42#0
AAGAAAACAACAAGAATCTTCTACCGAAAAGTGAAAACTCTATCAAAGAACAGGAAAAAT
TGAAAATTCTACCACAGCATCCACCATTGGCGATATTGGAAGATTCCATGAACATATCCA
ATCTTGTGTCAGCATCCCCACTCAGTCATTTTGAAGCGAAAAATAACGTTGACAGAAGGA
AGCCTCAAAATATGTCTCCGGGGGACATTAACGCATTCAGAGAAGGTTCAAACATGGCAC
CTCCAGAGACCTTAAATAAACCATTGTCAATGCATGATAAACTCATTAGTGATCAAATAA
TTCGGGGAAGGTTTGCCGCAAGCCTAAAAAATGAAATCTGTCAGCCCAAACAGCTTTTAA
AGACCTCAATATTTCCACAACTTGAAGTTTTAAATACCAAACATTTAACTGAAGATGACA
AAAAGGCACAAAACTATATGTTTACATCAAGTTATCAAGCAGCATACGGAAATAACTCCG
GTTTTTACGGGAATACGTACCGACGATTATACCCAATAAGAAGTTCCGAGACTGTTGCAG
ACCC

consensusID : consensus_42#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 475
fasta sequence

                              [GGGGAAGGTTTGCCGCCTAAAAAATGAAATCTGTCAGCCCAAACAGCTTTTAAAGACCTCAATATTTCCACAACTTGTATGTTTTTTCACAAGTCATGTTTTTGCATTCTTTAAAACATTTGACAGGAAGTTTTAAATACCAAACATTTAACTGAAGATGACAAAAAGGCACAAAACTATATGTTTACATCAAGTTATCAAGCGTAATTTCATTCGTAGTACATTGTATTACGTTTATATCAGAGCATACGGAAATAACTCCGGTTTTTACGGGAATACGTACCGACGATTATACCCAATAAGAAGTTCCGAGACTGTTGCAGACCCAATTAGAGGTCTTATGGATAGGGATTCATATTACCCTGCTACCAAGTCATGGATAGTAAGTTCTTATTTGTTACTTAATTCTAGCAAATATGTAATCGTATTCCAAATTCGACTAACTGGATCATCGCCTGCGCTTTTGGAGACTAAG]

[-] EMBL CD122864             [GGGGAAGGTTTGCCGCCTAAAAAATGAAATCTGTCAGCCCAAACAGCTTTTAAAGACCTCAATATTTCCACAACTTGTATGTTTTTTCACAAGTCATGTTTTTGCATTCTTTAAAACATTTGACAGGAAGTTTTAAATACCAAACATTTAACTGAAGATGACAAAAAGGCACAAAACTATATGTTTACATCAAGTTATCAAGCGTAATTTCATTCGTAGTACATTGTATTACGTTTATATCAGAGCATACGGAAATAACTCCGGTTTTTACGGGAATACGTACCGACGATTATACCCAATAAGAAGTTCCGAGACTGTTGCAGACCCAATTAGAGGTCTTATGGATAGGGATTCATATTACCCTGCTACCAAGTCATGGATAGTAAGTTCTTATTTGTTACTTAATTCTAGCAAATATGTAATCGTATTCCAAATTCGACTAACTGGATCATCGCCTGCGCTTTTGGAGACTAAG]




>consensus_42#1
GGGGAAGGTTTGCCGCCTAAAAAATGAAATCTGTCAGCCCAAACAGCTTTTAAAGACCTC
AATATTTCCACAACTTGTATGTTTTTTCACAAGTCATGTTTTTGCATTCTTTAAAACATT
TGACAGGAAGTTTTAAATACCAAACATTTAACTGAAGATGACAAAAAGGCACAAAACTAT
ATGTTTACATCAAGTTATCAAGCGTAATTTCATTCGTAGTACATTGTATTACGTTTATAT
CAGAGCATACGGAAATAACTCCGGTTTTTACGGGAATACGTACCGACGATTATACCCAAT
AAGAAGTTCCGAGACTGTTGCAGACCCAATTAGAGGTCTTATGGATAGGGATTCATATTA
CCCTGCTACCAAGTCATGGATAGTAAGTTCTTATTTGTTACTTAATTCTAGCAAATATGT
AATCGTATTCCAAATTCGACTAACTGGATCATCGCCTGCGCTTTTGGAGACTAAG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_42#0      AAGAAAACAACAAGAATCTTCTACCGAAAAGTGAAAACTCTA---TCAAAGAACAGGAAA 57
consensus_42#1      -------GGGGAAGGTTTGCCGCCTAAAAAATGAAATCTGTCAGCCCAAACAGCTTTTAA 53
                               ***  *   *  *  **** ***** ** *     **** * *    **

consensus_42#0      AATTGAAAATTCTACCACAGCATCCACCATTGGCGATATTGGAAGATTCCATGAACATAT 117
consensus_42#1      AGACCTCAATATTTCCACAACTTGTATGTTTTTTCACAAGTCATGTTTT--TGCATTCTT 111
                    *      ***  * ***** * *  *   **    * *    * * **   ** *    *

consensus_42#0      CCAATCTTGTGTCAGCATCCCCACTCAGTCATTTTGAAGCGAAAAATAACGTTGACAGAA 177
consensus_42#1      TAAAACATTTGACAGGA-----AGTTTTAAATACCAAACATTTAACTGAAGATGACAAAA 166
                      ** * * ** *** *     * *     **    **     ** * * * ***** **

consensus_42#0      GGAAGCCTCAAAATATGTCTCCGGGGGACATTAACGCATTCAGAGAAGGTTCAAACATGG 237
consensus_42#1      AGGCACAAAACTATATGTTT-------ACATCAAGTTATCAAGCGTAATTTCATTCGTAG 219
                     *   *   *  ****** *       **** **   **  ** * *  ****  * * *

consensus_42#0      CACCTCCAGAGACCTTAAATAAACCATTGTCAATGCATGATAAACTCATTAGTGATCAAA 297
consensus_42#1      TACATTGTATTACGTT---TATATCAGAGCATACGGA-AATAACTCCGGTTTTTACGGGA 275
                     ** *      ** **   ** * **  *   * * *  ****   *  *  * *    *

consensus_42#0      TAATTCGGGGAAGGTTTGCCGCAAGCCTAAAAAATGAAATC--TGTCAGCCCAA--ACAG 353
consensus_42#1      ATACGTACCGACGATTATACCCAATAAGAAGTTCCGAGACTGTTGCAGACCCAATTAGAG 335
                      *      ** * **   * ***    **     ** *    **    *****  * **

consensus_42#0      CTTTTAAAGACC----TCAATATTTCCACAACTTGAAGTTTTAAATACCAAACATTTAAC 409
consensus_42#1      GTCTTATGGATAGGGATTCATATTACCCTGCTACCAAGTCATGGATAGTAAGTTCTTATT 395
                     * ***  **      *  ***** **        ****  *  ***  **    ***  

consensus_42#0      TGAAGATGACAAAAAGGCACAAAACTATATGTTTACATCAAGTTATCAAGCAGCATACGG 469
consensus_42#1      TGTTACTTAATTCTAG---CAAATATGTAATCGTATTCCAAATT------CGACTAACTG 446
                    **    * *     **   ****  * **    **   *** **      *  *  ** *

consensus_42#0      AAATAACTCCGGTTTTTACGGGAA-TACGTACCGACGATTATACCCAATAAGAAGTTCCG 528
consensus_42#1      GATCATCGCCTGCGCTTTTGGAGACTAAG------------------------------- 475
                     *  * * ** *   **  **  * ** *                               

consensus_42#0      AGACTGTTGCAGACCC 544
consensus_42#1      ----------------