cluster # 5476

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Schistosoma mansoni
cluster # 5476 cluster # 5476 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_5476#0 length = 264 sequences # 1

consensus_5476#1 length = 264 sequences # 2

consensusID : consensus_5476#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 264
fasta sequence

                              [GGTTGAATAAAATAATGTGGGAGCGAAGACTCTGTTAGACATGGGAGGGTTGTCCGCCATGAGCCTAAGTGGAGATGCTAAGGTGGGGCCANAAATCTCCATAATGTGCACTTTTTTTAATGAGAGGTTGGAGTAGATATATTTTTGCACTTTTTCCGCCCCATATTTTACATTTTTTACAACCTTGTTCCATCAAATGATTGTCTGGTATGAAAGAAAAACGTACAAAATCTAAGGAAACATGAGAATTTAAGAGAAGAGTGG]

[-] EMBL CD156085             [GGTTGAATAAAATAATGTGGGAGCGAAGACTCTGTTAGACATGGGAGGGTTGTCCGCCATGAGCCTAAGTGGAGATGCTAAGGTGGGGCCANAAATCTCCATAATGTGCACTTTTTTTAATGAGAGGTTGGAGTAGATATATTTTTGCACTTTTTCCGCCCCATATTTTACATTTTTTACAACCTTGTTCCATCAAATGATTGTCTGGTATGAAAGAAAAACGTACAAAATCTAAGGAAACATGAGAATTTAAGAGAAGAGTGG]




>consensus_5476#0
GGTTGAATAAAATAATGTGGGAGCGAAGACTCTGTTAGACATGGGAGGGTTGTCCGCCAT
GAGCCTAAGTGGAGATGCTAAGGTGGGGCCANAAATCTCCATAATGTGCACTTTTTTTAA
TGAGAGGTTGGAGTAGATATATTTTTGCACTTTTTCCGCCCCATATTTTACATTTTTTAC
AACCTTGTTCCATCAAATGATTGTCTGGTATGAAAGAAAAACGTACAAAATCTAAGGAAA
CATGAGAATTTAAGAGAAGAGTGG

consensusID : consensus_5476#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 264
fasta sequence

                              [AGGTTGAATGAAGGAATGTGGGAGCGAAGACTCTGTGAGACATGGGAGGGTTGACCGCCATGAGCCTAAGTGGAGATCCAAAGGTGCAACCATATATCTCCAGAATGTCCACTTTTTAAAGTGAGTGGTCTGAGTAGATATATTTTTGCACTTTCTCCGCCCCATATTTTACATCTTCTACAACCTTGTTCCATCAAATGATTGTCTGGTATGAAAGAAAAACGTACAAAATCTAAGGAAACATGAGAATTTAAGAGAAGAGTG]

[+] EMBL CD156570             [AGGTTGAATGAAGGAATGTGGGAGCGAAGACTCTGTGAGACATGGGAGGGTTGACCGCCATGAGCCTAAGTGGAGATCCAAAGGTGCAACCATATATCTCCAGAATGTCCACTTTTTAAAGTGAGTGGTCTGAGTAGATATATTTTTGCACTTTCTCCGCCCCATATTTTACATCTTCTACAACCTTGTTCCATCAAATGATTGTCTGGTATGAAAGAAAAACGTACAAAATCTAAGGAAACATGAGAATTTAAGAGAAGAGTG]
[+] EMBL CD156254             [AGGTTGAATGAAGGAATGTGGGAGCGAAGACTCTGTGAGACATGGGAGGGTTGACCGCCATGAGCCTAAGTGGAGATCCAAAGGTGCAACCATATATCTCCAGAATGTCCACTTTTTAAAATGAGTGGTCTGAGTAGATATATTTTTGCACTTTCTCCGCCCCATATTTTACATCTTCTACAACCTTGTTCCATCAAATGATTGTCTGGTATGAAAGAAAAACGTACAAAATCTAAGGAAACATGAGAATTTAAGAGAAGAGTG]




>consensus_5476#1
AGGTTGAATGAAGGAATGTGGGAGCGAAGACTCTGTGAGACATGGGAGGGTTGACCGCCA
TGAGCCTAAGTGGAGATCCAAAGGTGCAACCATATATCTCCAGAATGTCCACTTTTTAAA
GTGAGTGGTCTGAGTAGATATATTTTTGCACTTTCTCCGCCCCATATTTTACATCTTCTA
CAACCTTGTTCCATCAAATGATTGTCTGGTATGAAAGAAAAACGTACAAAATCTAAGGAA
ACATGAGAATTTAAGAGAAGAGTG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_5476#0      -GGTTGAATAAAATAATGTGGGAGCGAAGACTCTGTTAGACATGGGAGGGTTGTCCGCCA 59
consensus_5476#1      AGGTTGAATGAAGGAATGTGGGAGCGAAGACTCTGTGAGACATGGGAGGGTTGACCGCCA 60
                       ******** **  ********************** **************** ******

consensus_5476#0      TGAGCCTAAGTGGAGATGCTAAGGTGGGGCCANAAATCTCCATAATGTGCACTTTTTTTA 119
consensus_5476#1      TGAGCCTAAGTGGAGATCCAAAGGTGCAACCATATATCTCCAGAATGTCCACTTTTTAAA 120
                      ***************** * ******   *** * ******* ***** ********  *

consensus_5476#0      ATGAGAGGTTGGAGTAGATATATTTTTGCACTTTTTCCGCCCCATATTTTACATTTTTTA 179
consensus_5476#1      GTGAGTGGTCTGAGTAGATATATTTTTGCACTTTCTCCGCCCCATATTTTACATCTTCTA 180
                       **** ***  *********************** ******************* ** **

consensus_5476#0      CAACCTTGTTCCATCAAATGATTGTCTGGTATGAAAGAAAAACGTACAAAATCTAAGGAA 239
consensus_5476#1      CAACCTTGTTCCATCAAATGATTGTCTGGTATGAAAGAAAAACGTACAAAATCTAAGGAA 240
                      ************************************************************

consensus_5476#0      ACATGAGAATTTAAGAGAAGAGTGG 264
consensus_5476#1      ACATGAGAATTTAAGAGAAGAGTG- 264
                      ************************