cluster # 5576

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Schistosoma mansoni
cluster # 5576 cluster # 5576 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_5576#0 length = 545 sequences # 2

consensus_5576#1 length = 455 sequences # 1

consensusID : consensus_5576#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 545
fasta sequence

                              [TTACGCAATTACCATCACGCATTGAATTAGTCTTTGCCCGTAGAAAGTCTACATATGAGAATGGAGATGATGACGTGTTTAGTATTACGGGTGGTAAGGATCAGTTGATTGATGTCGTAGGGGAATCACTACTTGAAGTTGCTGCTAGTGAAATCGGTTCCGTAGATACTGGCTCATCTGTGAGAATGGTGGATGCTTACGATAAAGTTGATCGGTCAAATTATTCCAGTCCAGTATCACCTGCTACGGCTCATAAACGTGTCACTGAATGGATTCGAAAATCTCAAGGAGATTTAAGCGCGAATATTCACTATCCATCTTCACCTGAATCTTCTGTAACTATGCAAACTAATAATAAATCAGAAAGATTTAGTTGTGATTTAAAAGTAAGTACTTATTTACAGTACAATTACTGAAATAATGTTTGATATTCTAAAGAGCAAATTGTCATTAGAAGAAAATATGCATTTCGTCATAGCTGTATAGGTTTATTAGCTGTTATGGCTATCTGGTCAAACTTTAGGATCAGCTATTTTCTAACTGCA]

[-] EMBL CD068192             [TTACGCAATTACCATCACGCATTGAATTAGTCTTTGCCCGTAGAAAGTCTACATATGAGAATGGAGATGATGACGTGTTTAGTATTACGGGTGGTAAGGATCAGTTGATTGATGTCGTAGGGGAATCACTACTTGAAGTTGCTGCTAGTGAAATCGGTTCCGTAGATACTGGCTCATCTGTGAGAATGGTGGATGCTTACGATAAAGTTGATCGGTCAAATTATTCCAGTCCAGTATCACCTGCTACGGCTCATAAACGTGTCACTGAATGGATTCGAAAATCTCAAGGAGATTTAAGCGCGAATATTCACTATCCATCTTCACCTGAATCTTCTGTAACTATGCAAACTAATAATAAATCAGAAAGATTTAGTTGTGAT                                                                                                                                                                     ]
[+] EMBL CD063130             [                                                                    GATGACGTGTTTAGTATTACGGGTGGTAAGGATCAGTTGATTGATGTCGTAGGGGAATCACTACTTGAAGTTGCTGCTAGTGAAACCGGTTCCGTAGATACTGGCTCATCTGTGAGAATGGTGGATGCTTACGATAAAGTTGATCGGTCAAATTATTCCAGTCCAGTATCACCTGCTACGGCTCATAAACGTGTCACTGAATGGATTCGAAAATCTCAAGGAGATTTAAGCGCGAATATTCACTATCCATCTTCACCTGAATCTTCTGTAACTATGCAAACTAATAATAAATCAGAAAGATTTAGTTGTGATTTAAAAGTAAGTACTTATTTACAGTACAATTACTGAAATAATGTTTGATATTCTAAAGAGCAAATTGTCATTAGAAGAAAATATGCATTTCGTCATAGCTGTATAGGTTTATTAGCTGTTATGGCTATCTGGTCAAACTTTAGGATCAGCTATTTTCTAACTGCA]




>consensus_5576#0
TTACGCAATTACCATCACGCATTGAATTAGTCTTTGCCCGTAGAAAGTCTACATATGAGA
ATGGAGATGATGACGTGTTTAGTATTACGGGTGGTAAGGATCAGTTGATTGATGTCGTAG
GGGAATCACTACTTGAAGTTGCTGCTAGTGAAATCGGTTCCGTAGATACTGGCTCATCTG
TGAGAATGGTGGATGCTTACGATAAAGTTGATCGGTCAAATTATTCCAGTCCAGTATCAC
CTGCTACGGCTCATAAACGTGTCACTGAATGGATTCGAAAATCTCAAGGAGATTTAAGCG
CGAATATTCACTATCCATCTTCACCTGAATCTTCTGTAACTATGCAAACTAATAATAAAT
CAGAAAGATTTAGTTGTGATTTAAAAGTAAGTACTTATTTACAGTACAATTACTGAAATA
ATGTTTGATATTCTAAAGAGCAAATTGTCATTAGAAGAAAATATGCATTTCGTCATAGCT
GTATAGGTTTATTAGCTGTTATGGCTATCTGGTCAAACTTTAGGATCAGCTATTTTCTAA
CTGCA

consensusID : consensus_5576#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 455
fasta sequence

                              [CCCGATTCCAGTGTCGACTGCTACGGCTCATAAACGTGTCACTGAATGGATTCGAAAATCTCAAGGAGATTTAAGCGCGAATATTCACTATCCATCTTCACCTGAATCTTCTGTAACTATGCAAACTAATAATAAATCAGAAAGATTTAGTTGTGATTTAAAACATGCACAATCGTACAAAATTCACCCCCTCCATAACTATATAAATCCGAATTACACTAGTAAATTGCAACAACAGTATCTAGTAAATACAATGAAAAACGATCGTAAATATTCATTACCAAGTACAGTACAGCCGTCAGAAACACAAATCCATTCTAGGACTTTAGGGCGTTTGCCAATATCAAGATGTAGTAAAGTGTGTATAGGAAAACAATCATCTACTGAACGACACAATCATCGCCGTTGTCAAACTCTACCACATTATCATCATAATCGACTAAATCGTATTGATC]

[+] EMBL CD069256             [CCCGATTCCAGTGTCGACTGCTACGGCTCATAAACGTGTCACTGAATGGATTCGAAAATCTCAAGGAGATTTAAGCGCGAATATTCACTATCCATCTTCACCTGAATCTTCTGTAACTATGCAAACTAATAATAAATCAGAAAGATTTAGTTGTGATTTAAAACATGCACAATCGTACAAAATTCACCCCCTCCATAACTATATAAATCCGAATTACACTAGTAAATTGCAACAACAGTATCTAGTAAATACAATGAAAAACGATCGTAAATATTCATTACCAAGTACAGTACAGCCGTCAGAAACACAAATCCATTCTAGGACTTTAGGGCGTTTGCCAATATCAAGATGTAGTAAAGTGTGTATAGGAAAACAATCATCTACTGAACGACACAATCATCGCCGTTGTCAAACTCTACCACATTATCATCATAATCGACTAAATCGTATTGATC]




>consensus_5576#1
CCCGATTCCAGTGTCGACTGCTACGGCTCATAAACGTGTCACTGAATGGATTCGAAAATC
TCAAGGAGATTTAAGCGCGAATATTCACTATCCATCTTCACCTGAATCTTCTGTAACTAT
GCAAACTAATAATAAATCAGAAAGATTTAGTTGTGATTTAAAACATGCACAATCGTACAA
AATTCACCCCCTCCATAACTATATAAATCCGAATTACACTAGTAAATTGCAACAACAGTA
TCTAGTAAATACAATGAAAAACGATCGTAAATATTCATTACCAAGTACAGTACAGCCGTC
AGAAACACAAATCCATTCTAGGACTTTAGGGCGTTTGCCAATATCAAGATGTAGTAAAGT
GTGTATAGGAAAACAATCATCTACTGAACGACACAATCATCGCCGTTGTCAAACTCTACC
ACATTATCATCATAATCGACTAAATCGTATTGATC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_5576#0      TTACGCAATTACCATCACGCATTGAATTAGTCTTTGCCCGTAGAAAGTCTACATATGAGA 60
consensus_5576#1      ------------------------------------------------------------
                                                                                  

consensus_5576#0      ATGGAGATGATGACGTGTTTAGTATTACGGGTGGTAAGGATCAGTTGATTGATGTCGTAG 120
consensus_5576#1      ------------------------------------------------------------
                                                                                  

consensus_5576#0      GGGAATCACTACTTGAAGTTGCTGCTAGTGAAATCGGTTCCGTAGATACTGGCTCATCTG 180
consensus_5576#1      ------------------------------------------------------------
                                                                                  

consensus_5576#0      TGAGAATGGTGGATGCTTACGATAAAGTTGATCGGTCAAATTATTCCAGTCCAGTATCAC 240
consensus_5576#1      -------------------------------------------CCCGATTCCAGTGTCGA 17
                                                                   * * ****** **  

consensus_5576#0      CTGCTACGGCTCATAAACGTGTCACTGAATGGATTCGAAAATCTCAAGGAGATTTAAGCG 300
consensus_5576#1      CTGCTACGGCTCATAAACGTGTCACTGAATGGATTCGAAAATCTCAAGGAGATTTAAGCG 77
                      ************************************************************

consensus_5576#0      CGAATATTCACTATCCATCTTCACCTGAATCTTCTGTAACTATGCAAACTAATAATAAAT 360
consensus_5576#1      CGAATATTCACTATCCATCTTCACCTGAATCTTCTGTAACTATGCAAACTAATAATAAAT 137
                      ************************************************************

consensus_5576#0      CAGAAAGATTTAGTTGTGATTTAAAA-GTAAGTACTTATTTACAGTACAATTACTGAAAT 419
consensus_5576#1      CAGAAAGATTTAGTTGTGATTTAAAACATGCACAATCGTACAAAATTCACCCCCTCCATA 197
                      **************************  *    * *  *  * * * **    **  *  

consensus_5576#0      AATGTTTGAT----ATTCTAAAGAGCAAATTGTCATTAGAAGA----AAATATGCATTTC 471
consensus_5576#1      ACTATATAAATCCGAATTACACTAGTAAATTGCAACAACAGTATCTAGTAAATACAATGA 257
                      * * * * *     * *   *  ** ******  *  * *  *      * ** ** *  

consensus_5576#0      GTCATAGCTGTATAGGTTTATTAGCTGTTATGGCTATCTGGTCAAACTTTAGGATCAGCT 531
consensus_5576#1      AAAACGATCGTAAATATTCATTACCAAGTACAGTACAGCCGTCAGAAACACAAATC---C 314
                         *     *** *  ** **** *   **  *       **** *       ***    

consensus_5576#0      ATTTTCTAACTGCA---------------------------------------------- 545
consensus_5576#1      ATTCTAGGACTTTAGGGCGTTTGCCAATATCAAGATGTAGTAAAGTGTGTATAGGAAAAC 374
                      *** *   ***  *                                              

consensus_5576#0      ------------------------------------------------------------
consensus_5576#1      AATCATCTACTGAACGACACAATCATCGCCGTTGTCAAACTCTACCACATTATCATCATA 434
                                                                                  

consensus_5576#0      ---------------------
consensus_5576#1      ATCGACTAAATCGTATTGATC 455