cluster # 5731

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Schistosoma mansoni
cluster # 5731 cluster # 5731 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_5731#0 length = 448 sequences # 2

consensus_5731#1 length = 227 sequences # 1

consensusID : consensus_5731#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 448
fasta sequence

                              [AAAATTCGCCTTTCTTGAGTCTGTATCATATGTTTCAACCTCGGCTCTTGAATACCCCACCATTTAAATTCACATGTGACAAGTTTGTAGGCGCACATTATTGGTAGATCTGTATTTTCCCACCATGTTGGGCCTACTAATGGACCTCGACCAGTTTTTACTGACTGATATATTCTAGGATCACATGTTGCATCATAGTCAGAAGCACTGTGCAACTGATCATTTACAATATCAATATATACAACTTCTCGTTGAGCCAGGAGCTTTGGTGGAAGGTTGTGAATATTTTCGATATCAATTTTATCTTGTACGTGCATAGACTCAATCATCAGAGTAAAGTTATTTTGCATATATTTAGGATTCTGTAAAACTGTACGACAGTAAGGGTAAGCATTCCAGGCCTTTTCGTCAATTTCAAGTGATCCTTTCGGCGCAAGCAGACGTACGT]

[+] EMBL CD122944             [AAAATTCGCCTTTCTTGAGTCTGTATCATATGTTTCAACCTCGGCTCTTGAATACCCCACCATTTAAATTCACATGTGACAAGTTTGTAGGCGCACATTATTGGTAGATCTGTATTTTCCCACCATGTTGGGCCTACTAATGGACCTCGACCAGTTTTTACTGACTGATATATTCTAGGATCACATGTTGCATCATAGTCAGAAGCACTGTGCAACTGATCATTTACAATATCAATATATACAACTTCTCGTTGAGCCAGGAGCTTTGGTGGAAGGTTGTGAATATTTTCGATATCAATTTTATCTTGTACGTGCATAGACTCAATCATCAGAGTAAAGTTATTTTGCATATATTTAGGATTCTGTAAAACTGTACGACAGTAAGGGTAAGCATTCCAGGCCTTTTCGTCAATTTCAAGTGATCCTTTCGGCGCAAGCAGACGTACGT]
[-] EMBL CD199730             [                                                                                                                                                                             TCTAGGATCACATGTTGCATCATAGTCAGAAGCACTGTGCAACTGATCATTTACAATATCAATATATACAACTTCTCGTTGAGCCAGGAGCTTTGGTGGAAGGTTGTGAATATTTTCGATATCAATTTTATCTTGTACGTGCATAGACTCAATCATCAGAGTAAAGTTATTTTGCATATATTTAGGATTCTGTAAA                                                                               ]




>consensus_5731#0
AAAATTCGCCTTTCTTGAGTCTGTATCATATGTTTCAACCTCGGCTCTTGAATACCCCAC
CATTTAAATTCACATGTGACAAGTTTGTAGGCGCACATTATTGGTAGATCTGTATTTTCC
CACCATGTTGGGCCTACTAATGGACCTCGACCAGTTTTTACTGACTGATATATTCTAGGA
TCACATGTTGCATCATAGTCAGAAGCACTGTGCAACTGATCATTTACAATATCAATATAT
ACAACTTCTCGTTGAGCCAGGAGCTTTGGTGGAAGGTTGTGAATATTTTCGATATCAATT
TTATCTTGTACGTGCATAGACTCAATCATCAGAGTAAAGTTATTTTGCATATATTTAGGA
TTCTGTAAAACTGTACGACAGTAAGGGTAAGCATTCCAGGCCTTTTCGTCAATTTCAAGT
GATCCTTTCGGCGCAAGCAGACGTACGT

consensusID : consensus_5731#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 227
fasta sequence

                              [TCTAGGATCACATGTTGCATCATAGTCAGAAGCACTGTGCAACTGATCATTTACAATATCAATATATACAACTTCTCGTTGAGCAGGAGCTTTGGTGGAAGGTTGTGAATATTTTCGATATCAATTTTATCTTGTACGTGCATAGACTCAATCATCAGAGTAAAGTTATTTTGCATATATTTAGGATTCTAAAAAAATTTATGAAGTTATTTATGTATACCTGTAAA]

[-] EMBL CD199741             [TCTAGGATCACATGTTGCATCATAGTCAGAAGCACTGTGCAACTGATCATTTACAATATCAATATATACAACTTCTCGTTGAGCAGGAGCTTTGGTGGAAGGTTGTGAATATTTTCGATATCAATTTTATCTTGTACGTGCATAGACTCAATCATCAGAGTAAAGTTATTTTGCATATATTTAGGATTCTAAAAAAATTTATGAAGTTATTTATGTATACCTGTAAA]




>consensus_5731#1
TCTAGGATCACATGTTGCATCATAGTCAGAAGCACTGTGCAACTGATCATTTACAATATC
AATATATACAACTTCTCGTTGAGCAGGAGCTTTGGTGGAAGGTTGTGAATATTTTCGATA
TCAATTTTATCTTGTACGTGCATAGACTCAATCATCAGAGTAAAGTTATTTTGCATATAT
TTAGGATTCTAAAAAAATTTATGAAGTTATTTATGTATACCTGTAAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_5731#0      AAAATTCGCCTTTCTTGAGTCTGTATCATATGTTTCAACCTCGGCTCTTGAATACCCCAC 60
consensus_5731#1      ------------------------------------------------------------
                                                                                  

consensus_5731#0      CATTTAAATTCACATGTGACAAGTTTGTAGGCGCACATTATTGGTAGATCTGTATTTTCC 120
consensus_5731#1      ------------------------------------------------------------
                                                                                  

consensus_5731#0      CACCATGTTGGGCCTACTAATGGACCTCGACCAGTTTTTACTGACTGATATATTCTAGGA 180
consensus_5731#1      -----------------------------------------------------TCTAGGA 7
                                                                           *******

consensus_5731#0      TCACATGTTGCATCATAGTCAGAAGCACTGTGCAACTGATCATTTACAATATCAATATAT 240
consensus_5731#1      TCACATGTTGCATCATAGTCAGAAGCACTGTGCAACTGATCATTTACAATATCAATATAT 67
                      ************************************************************

consensus_5731#0      ACAACTTCTCGTTGAGCCAGGAGCTTTGGTGGAAGGTTGTGAATATTTTCGATATCAATT 300
consensus_5731#1      ACAACTTCTCGTTGAGC-AGGAGCTTTGGTGGAAGGTTGTGAATATTTTCGATATCAATT 126
                      ***************** ******************************************

consensus_5731#0      TTATCTTGTACGTGCATAGACTCAATCATCAGAGTAAAGTTATTTTGCATATATTTAGGA 360
consensus_5731#1      TTATCTTGTACGTGCATAGACTCAATCATCAGAGTAAAGTTATTTTGCATATATTTAGGA 186
                      ************************************************************

consensus_5731#0      TTCTGTAAAACTGTACGACAGTAAGGGTAAGCATTCCAGGCCTTTTCGTCAATTTCAAGT 420
consensus_5731#1      TTCTAAAAAAATTTATGAAGTTATTTATGTATACCTGTAAA------------------- 227
                      ****  **** * ** **   **    *    *                           

consensus_5731#0      GATCCTTTCGGCGCAAGCAGACGTACGT 448
consensus_5731#1      ----------------------------