cluster # 6017

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Schistosoma mansoni
cluster # 6017 cluster # 6017 Sequences # 4 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_6017#0 length = 481 sequences # 2

consensus_6017#1 length = 150 sequences # 2

consensusID : consensus_6017#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 481
fasta sequence

                              [AGTTTAGTAACGATGTCGAGGAGACGTTGGTAGTAGCTACCGATGAATGAATGACAGTTTGAGCTGCAGGAGAACGGCCACCACCAGAAAAGATAATGAATGGTTCGCCATTCCTAGTAGGTAACCATTCGACCAAACGTATCGGTTCATAAAATGCATAATCATCTGGAACCGCTTCACTAGGGGCATGAGGGCAGACCACAGAAACTGGACGTTGTGGTTGACGAATTAACCAAGTTGCAAGTAAACCATGATTATGAGAAGTAAGGAAACTTTTTCCATCCCAGTGCCAGACCACGCTATATAAACTATCTGTATGTTTGAAACGAGCATCACCCTGTTTGGTTTTTAGATCCCATAATACGAGAAACCCCGAAGAATAACCAATAAGAATCTTGTTAGAATCTTGAGGATTCTCAGCTATCTGAATAACTTTCCCCGGATGCGATGACTGAGACAGATCGATAGCCTTGTTCCAATT]

[+] EMBL CD121436             [AGTTTAGTAACGATGTCGAGGAGACGTTGGTAGTAGCTACCGATGAATGAATGACAGTTTGAGCTGCAGGAGAACGGCCACCACCAGAAAAGATAATGAATGGTTCGCCATTCCTAGTAGGTAACCATTCGACCAAACGTATCGGTTCATAAAATGCATAATCATCTGGAACCGCTTCACTAGGGGCATGAGGGCAGACCACAGAAACTGGACGTTGTGGTTGACGAATTAACCAAGTTGCAAGTAAACCATGATTATGAGAAGTAAGGAAACTTTTTCCATCCCAGTGCCAGACCACGCTATATAAACTATCTGTATGTTTGAAACGAGCATCACCCTGTTTGGTTTTTAGATCCCATAATACGAGAAACCCCGAAGAATAACCAATAAGAATCTTGTTAGAATCTTGAGGATTCTCAGCTATCTGAATAACTTTCCCCGGATGCGATGACTGAGACAGATCGATAGCCTTGTTCCAATT]
[+] EMBL CD188157             [                                                                           GGCCACCACCAGAAAAGATAATGAATGGTTCGCCATTCCTAGTAGGTAACCATTCGACCAAACGTATCGGTTCATAAAATGCATAATCATCTGGAACCGCTTCACTAGGGGCATGAGGGCAGATCACAGAAACTGGACGTTGTGGTTGACGAATTAACCAAGTTGCAAGTAAACCATGATTATGAGAAGTAAGGAAACT                                                                                                                                                                                                               ]




>consensus_6017#0
AGTTTAGTAACGATGTCGAGGAGACGTTGGTAGTAGCTACCGATGAATGAATGACAGTTT
GAGCTGCAGGAGAACGGCCACCACCAGAAAAGATAATGAATGGTTCGCCATTCCTAGTAG
GTAACCATTCGACCAAACGTATCGGTTCATAAAATGCATAATCATCTGGAACCGCTTCAC
TAGGGGCATGAGGGCAGACCACAGAAACTGGACGTTGTGGTTGACGAATTAACCAAGTTG
CAAGTAAACCATGATTATGAGAAGTAAGGAAACTTTTTCCATCCCAGTGCCAGACCACGC
TATATAAACTATCTGTATGTTTGAAACGAGCATCACCCTGTTTGGTTTTTAGATCCCATA
ATACGAGAAACCCCGAAGAATAACCAATAAGAATCTTGTTAGAATCTTGAGGATTCTCAG
CTATCTGAATAACTTTCCCCGGATGCGATGACTGAGACAGATCGATAGCCTTGTTCCAAT
T

consensusID : consensus_6017#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 150
fasta sequence

                              [GNGCCGCCATGGTCTGGCCGCGGNGAATTCGATTACTTCGACCGGCCTGGCAGATCACAGAAACTGGACGTTGTGGTTGACGAATTAACCAAGTTGCAAGTAAACCATGATTATGAGAAGTAAGGAAACTTTTTCCATCCCAGTGCCAGG]

[+] EMBL CD162388             [GNGCCGCCATGGTCTGGCCGCGGNGAATTCGATTACTTCGACCGGCCTGGCAGATCACAGAAACTGGACGTTGTGGTTGACGAATTAACCAAGTTGCAAGTAAACCATGATTATGAGAAGTAAGGAAACTTTTTCCATCCCAGTGCCAGG]
[+] EMBL CD120536             [                                            GCCTGGCAGATCACAGAAACTGGACGTTGTGGTTGACGAATTAACCAAGTTGCAAGTAAACCATGATTATGAGAAGTAAGGAAACTTTT                 ]




>consensus_6017#1
GNGCCGCCATGGTCTGGCCGCGGNGAATTCGATTACTTCGACCGGCCTGGCAGATCACAG
AAACTGGACGTTGTGGTTGACGAATTAACCAAGTTGCAAGTAAACCATGATTATGAGAAG
TAAGGAAACTTTTTCCATCCCAGTGCCAGG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_6017#0      AGTTTAGTAACGATGTCGAGGAGACGTTGGTAGTAGCTACCGATGAATGAATGACAGTTT 60
consensus_6017#1      ------------------------------------------------------------
                                                                                  

consensus_6017#0      GAGCTGCAGGAGAACGGCCACCACCAGAAAAGATAATGAATGGTTCGCCATTCCTAGTAG 120
consensus_6017#1      ------------------------------------------------------------
                                                                                  

consensus_6017#0      GTAACCATTCGACCAAACGTATCGGTTCATAAAATGCATAATCATCTGGAACCGCTTCAC 180
consensus_6017#1      -----------------------GNGCCGCCATG-GTCTGGCCGCGGNGAATTCGATTAC 36
                                             *   *   *   *  *   *     ***     * **

consensus_6017#0      TAGGGGCATGAGGGCAGACCACAGAAACTGGACGTTGTGGTTGACGAATTAACCAAGTTG 240
consensus_6017#1      TTCGACCGGCCTGGCAGATCACAGAAACTGGACGTTGTGGTTGACGAATTAACCAAGTTG 96
                      *  *  *     ****** *****************************************

consensus_6017#0      CAAGTAAACCATGATTATGAGAAGTAAGGAAACTTTTTCCATCCCAGTGCCAGACCACGC 300
consensus_6017#1      CAAGTAAACCATGATTATGAGAAGTAAGGAAACTTTTTCCATCCCAGTGCCAGG------ 150
                      *****************************************************       

consensus_6017#0      TATATAAACTATCTGTATGTTTGAAACGAGCATCACCCTGTTTGGTTTTTAGATCCCATA 360
consensus_6017#1      ------------------------------------------------------------
                                                                                  

consensus_6017#0      ATACGAGAAACCCCGAAGAATAACCAATAAGAATCTTGTTAGAATCTTGAGGATTCTCAG 420
consensus_6017#1      ------------------------------------------------------------
                                                                                  

consensus_6017#0      CTATCTGAATAACTTTCCCCGGATGCGATGACTGAGACAGATCGATAGCCTTGTTCCAAT 480
consensus_6017#1      ------------------------------------------------------------
                                                                                  

consensus_6017#0      T 481
consensus_6017#1      -