cluster # 6214

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Schistosoma mansoni
cluster # 6214 cluster # 6214 Sequences # 4 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_6214#0 length = 439 sequences # 3

consensus_6214#1 length = 93 sequences # 1

consensusID : consensus_6214#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 439
fasta sequence

                              [GTGAACCATTTCACACTGTCCTGTGTAAATGCTTATTTCTTTCTCTTTGCTACATAACTTTCACTTTCATTTCTGATTATATAAATACAAGTTTCTGTATACTTCACTCCCGCACTTTATATTCTTTGTCACATTATTTGTTTTCAAATACTTGTTTATCATTATGATGATATGTTTAAAATTGAAATATTTTTTTCTTATGAATATATTTTTACAAATAATTTTGAATATGTTAAAGCCATGTTTCTACTTAAAAAGAACTCTCGGTGTATGTTTCATTGTTTATCGTTTTTATTATATCAGTGGACTATTTGTTGTTACCATCTTTGTCAACAGTCATTTACTAA-TGTTTACGA-TAAGGAGAACGAAGCTGTAGTCCCCTTGTCTTCGCTTTTATGTGTTTTATCCACATTAAAAGAGTTGCACACAGTTTGGAATG]

[+] EMBL CD090622             [GTGAACCATTTCACACTGTCCTGTGTAAATGCTTATTTCTTTCTCTTTGCTACATAACTTTCACTTTCATTTCTGATTATATAAATACAAGTTTCTGTATACTTCACTCCCGCACTTTATATTCTTTGTCACATTATTTGTTTTCAAATACTTGTTTATCATTATGATGATATGTTTAAAATTGAAATATTTTTTTCTTATGAATATATTTTTACAAATAATTTTGAATATGTTAAAGCCATGTTTCTACTTAAAAAGAACTCTCGGTGTATGTTTCATTGTTTATCGTTTTTATTATATCAGTGGACTATTTGTTGTTACCATCTTTGTCAACAGTCATTTACTAA TGTTTACGA TAAGGAGAACGAAGCTGTAGTCCCCTTGTCTTCGCTTTTATGTGTTTTATCCACATTAAAAGAGTTGCACACAGTTTGGAATG]
[+] EMBL CD084230             [                                                                                                                                                                                                                                                                                         TTTATCGTTTTTATTATATCAGTGGACTATTTGTTGTTACCATCTTTGTCAACAGTCATTTACTAACTGTTTACGAGTAAGGAGAACGAAGCTGTAGTCCCCTag                                                       ]
[+] EMBL AI395860             [                                                                                                                                                                                                                                                                                                                                                      ACTAA TGTTTANKA TAAGGAGAACGAAGCTGTAGTCCCCTTGTCTTCGCTTTTATGTGTTTTATCCACATTAAAAGAGTTGCACACAGTTTGGAA  ]




>consensus_6214#0
GTGAACCATTTCACACTGTCCTGTGTAAATGCTTATTTCTTTCTCTTTGCTACATAACTT
TCACTTTCATTTCTGATTATATAAATACAAGTTTCTGTATACTTCACTCCCGCACTTTAT
ATTCTTTGTCACATTATTTGTTTTCAAATACTTGTTTATCATTATGATGATATGTTTAAA
ATTGAAATATTTTTTTCTTATGAATATATTTTTACAAATAATTTTGAATATGTTAAAGCC
ATGTTTCTACTTAAAAAGAACTCTCGGTGTATGTTTCATTGTTTATCGTTTTTATTATAT
CAGTGGACTATTTGTTGTTACCATCTTTGTCAACAGTCATTTACTAATGTTTACGATAAG
GAGAACGAAGCTGTAGTCCCCTTGTCTTCGCTTTTATGTGTTTTATCCACATTAAAAGAG
TTGCACACAGTTTGGAATG

consensusID : consensus_6214#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 93
fasta sequence

                              [AAAACGATAAACAATGAAACAGAGGCCGATAGTTCTTTCTAAATACAAACATGGCTTTAACATATTCAAAATCATTTGTAAAAATATATTCAT]

[+] EMBL CD117801             [AAAACGATAAACAATGAAACAGAGGCCGATAGTTCTTTCTAAATACAAACATGGCTTTAACATATTCAAAATCATTTGTAAAAATATATTCAT]




>consensus_6214#1
AAAACGATAAACAATGAAACAGAGGCCGATAGTTCTTTCTAAATACAAACATGGCTTTAA
CATATTCAAAATCATTTGTAAAAATATATTCAT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_6214#0      GTGAACCATTTCACACTGTCCTGTGTAAATGCTTATTTCTTTCTCTTTGCTA-CATAACT 59
consensus_6214#1      --AAAACGATAAACAATGAA--ACAGAGGCCGATAGTTCTTTCTAAATACAAACATGGCT 56
                         ** *  *  *** **        *      ** ********   * * * ***  **

consensus_6214#0      TTCACTTTCATTTCTGATTATATAAATACAAGTTTCTGTATACTTCACTCCCGCACTTTA 119
consensus_6214#1      TTAACAT--ATTCAAAATCATTTGTAAAAATATATTCAT--------------------- 93
                      ** ** *  ***    ** ** *  * * *  * *   *                     

consensus_6214#0      TATTCTTTGTCACATTATTTGTTTTCAAATACTTGTTTATCATTATGATGATATGTTTAA 179
consensus_6214#1      ------------------------------------------------------------
                                                                                  

consensus_6214#0      AATTGAAATATTTTTTTCTTATGAATATATTTTTACAAATAATTTTGAATATGTTAAAGC 239
consensus_6214#1      ------------------------------------------------------------
                                                                                  

consensus_6214#0      CATGTTTCTACTTAAAAAGAACTCTCGGTGTATGTTTCATTGTTTATCGTTTTTATTATA 299
consensus_6214#1      ------------------------------------------------------------
                                                                                  

consensus_6214#0      TCAGTGGACTATTTGTTGTTACCATCTTTGTCAACAGTCATTTACTAATGTTTACGATAA 359
consensus_6214#1      ------------------------------------------------------------
                                                                                  

consensus_6214#0      GGAGAACGAAGCTGTAGTCCCCTTGTCTTCGCTTTTATGTGTTTTATCCACATTAAAAGA 419
consensus_6214#1      ------------------------------------------------------------
                                                                                  

consensus_6214#0      GTTGCACACAGTTTGGAATG 439
consensus_6214#1      --------------------