cluster # 6849

These datas are free for academic use only, please contact me for any other use.

Schistosoma mansoni
cluster # 6849 cluster # 6849 Sequences # 4 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_6849#0 length = 465 sequences # 3

consensus_6849#1 length = 163 sequences # 1

consensusID : consensus_6849#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 465
fasta sequence

                              [TTTTTTTTTTTTTTTTTTTTCAAAACCAACAATCTTATTTTCAAAGATCAAAATTTATCAATAGATGGTGGTAAAGAAAAGCTAAAATATAATTTTCAGTCAATTTGAGGTTGCGATGTAAAAAGGTACAGACTGGTGAAAGAAACAAAGTCATGTTTAATTACACAGTGGTGGCGCGTGTGTAAATGCACTTTAAAAGGCTAAGCGAAAATCTAAACAAACACGTGATGTCCTGTCATTATTGAGATACAGTCTTAAAAATGAAAGAGCATTTATGCAGAATACTAGGAGGAAGACCATCTACACTGCATAAGATTATGAACATTTTGCGGGAAAGATAAACCTAATAACTTTAAGAAAGCACACTTTAACTCAAAATATTTAACTTTTGGAACAAAAGGC-ACGTATGTAAAAGGGCACCATATGATCTTGGTGAAATATCATAAAACCGTGAATATTAACTTG]

[+] EMBL AI395843             [TTTTTTTTTTTTTTTTTTTTCAAAACCAACAATCTTATTTTCAAAGATCAAAATTTATCAATAGATGGTGGTAAAGAAAAGCTAAAATATAATTTTCAGTCAATTTGAGGTTGCGATGTAAAAAGGTACAGACTGGTGAAAGAAACAAAGTCATGTTTAATTACACAGTGGTGGCGCGTGTGTAAATGCACTTTAAAAGGCTAAGCGAAAATCTAAACAAACACGTGATGTCCTGTCATTATTGAGATACAGTCTTAAAAATGAAAGAGCATTTATGCAGAATACTAGGAGGAAGACCATCTACACTGCATAAGATTATGAACATTTTGCGGGAAAGATAAACCTAATAACTTTAAGAAAGCACACTTTAACTCAAAATATTTAACTTTTGGAACAAAAGGC ACGT                                                           ]
[+] EMBL CD077121             [                               ATCTTATTTTCAAAGATCAAAATTTATCAATAGATGGTGGTAAAGAAAAGCTAAAATATAATTTTCAGTCAATTTGAGGTTGCGATGTAAAAAGGTACAGACTGGTGAAAGAAACAAAGTCATGTTTAATTACACAGTGGTGGCGCGTGTGTAAATGCACTTTAAAAGGCTAAGCGAAAATCTAAACAAACACGTGATGTCCTGTCATTATTGAGATACAGTCTTAAAAATGAAAGAGCATTTATGCAGAATACTAGGAGGAAGACCATCTACACTGCATAAGATTATGAACATTTTGCGGGAAAGATAAACCTAATAACTTTAAGAAAGCACACTTTAACTCAAAATAGTTAACTTTTGGAACAAAAGGCAACGTATGTAAAAGGGCACCATATGATCTTGGTGAAATATCATAAAACCGTGAATATTAACTTG]
[+] EMBL CD140039             [                                                    ATTTATCAATAGATGGTGGTAAAGAAAAGCTAAAATATAATTTTCAGTCAATTTGAGGTTGCGATGTAAAAAGGTACAGACTGGTGAAAGAAACAAAGTCATGTTTAATTACACAGTGGTGGCGCGTGTGTAAATGCACTTTANAAGGCTAAGCGAAAATCTAAACAAACACGTGATGTCCTGTCATTATTGAGATACAGTCTTAAAAATGAAAGAGCATTTATGCAGAATACTAGGAGGAAGACCATCTACACTGCATAAGATTATGAACATTTT                                                                                                                                          ]




>consensus_6849#0
TTTTTTTTTTTTTTTTTTTTCAAAACCAACAATCTTATTTTCAAAGATCAAAATTTATCA
ATAGATGGTGGTAAAGAAAAGCTAAAATATAATTTTCAGTCAATTTGAGGTTGCGATGTA
AAAAGGTACAGACTGGTGAAAGAAACAAAGTCATGTTTAATTACACAGTGGTGGCGCGTG
TGTAAATGCACTTTAAAAGGCTAAGCGAAAATCTAAACAAACACGTGATGTCCTGTCATT
ATTGAGATACAGTCTTAAAAATGAAAGAGCATTTATGCAGAATACTAGGAGGAAGACCAT
CTACACTGCATAAGATTATGAACATTTTGCGGGAAAGATAAACCTAATAACTTTAAGAAA
GCACACTTTAACTCAAAATATTTAACTTTTGGAACAAAAGGCACGTATGTAAAAGGGCAC
CATATGATCTTGGTGAAATATCATAAAACCGTGAATATTAACTTG

consensusID : consensus_6849#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 163
fasta sequence

                              [AAATTTATCAATAGATGGTGGAAAAGAAAAGCTAAAACTTAATTTTCAGTCAATTCGAGGTTGCGATGTAAAAAGGTACAGACTGGTGAAAGAAACAAAGTTATGTTTAATTACACAGAGTGGGCACGTGTGTAAATTCACTTTAAACGGCTTAGCGAAATTC]

[+] EMBL AI976187             [AAATTTATCAATAGATGGTGGAAAAGAAAAGCTAAAACTTAATTTTCAGTCAATTCGAGGTTGCGATGTAAAAAGGTACAGACTGGTGAAAGAAACAAAGTTATGTTTAATTACACAGAGTGGGCACGTGTGTAAATTCACTTTAAACGGCTTAGCGAAATTC]




>consensus_6849#1
AAATTTATCAATAGATGGTGGAAAAGAAAAGCTAAAACTTAATTTTCAGTCAATTCGAGG
TTGCGATGTAAAAAGGTACAGACTGGTGAAAGAAACAAAGTTATGTTTAATTACACAGAG
TGGGCACGTGTGTAAATTCACTTTAAACGGCTTAGCGAAATTC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_6849#0      TTTTTTTTTTTTTTTTTTTTCAAAACCAACAATCTTATTTTCAAAGATCAAAATTTATCA 60
consensus_6849#1      --------------------------------------------------AAATTTATCA 10
                                                                        **********

consensus_6849#0      ATAGATGGTGGTAAAGAAAAGCTAAAATATAATTTTCAGTCAATTTGAGGTTGCGATGTA 120
consensus_6849#1      ATAGATGGTGGAAAAGAAAAGCTAAAACTTAATTTTCAGTCAATTCGAGGTTGCGATGTA 70
                      *********** ***************  **************** **************

consensus_6849#0      AAAAGGTACAGACTGGTGAAAGAAACAAAGTCATGTTTAATTACACAGTGGTGGCGCGTG 180
consensus_6849#1      AAAAGGTACAGACTGGTGAAAGAAACAAAGTTATGTTTAATTACACAGAGTGGGCACGTG 130
                      ******************************* **************** *  *** ****

consensus_6849#0      TGTAAATGCACTTTAAAAGGCTAAGCGAAAATCTAAACAAACACGTGATGTCCTGTCATT 240
consensus_6849#1      TGTAAATTCACTTTAAACGGCTTAGCGAAATTC--------------------------- 163
                      ******* ********* **** ******* **                           

consensus_6849#0      ATTGAGATACAGTCTTAAAAATGAAAGAGCATTTATGCAGAATACTAGGAGGAAGACCAT 300
consensus_6849#1      ------------------------------------------------------------
                                                                                  

consensus_6849#0      CTACACTGCATAAGATTATGAACATTTTGCGGGAAAGATAAACCTAATAACTTTAAGAAA 360
consensus_6849#1      ------------------------------------------------------------
                                                                                  

consensus_6849#0      GCACACTTTAACTCAAAATATTTAACTTTTGGAACAAAAGGCACGTATGTAAAAGGGCAC 420
consensus_6849#1      ------------------------------------------------------------
                                                                                  

consensus_6849#0      CATATGATCTTGGTGAAATATCATAAAACCGTGAATATTAACTTG 465
consensus_6849#1      ---------------------------------------------