cluster # 7426

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Schistosoma mansoni
cluster # 7426 cluster # 7426 Sequences # 5 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_7426#0 length = 739 sequences # 2

consensus_7426#1 length = 574 sequences # 2
consensus_7426#2 length = 402 sequences # 1

consensusID : consensus_7426#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 739
fasta sequence

                              [CTGTCTGATTATGAGCAAAATGTTGTAACTACGCAACTGTGATATTCCGAACCAACTAAGTGCTTAACATAATGGATTTATGGCGCGTTGTAGAGACATTCAGAGAATTCGGTTTACACCAATTGAATGATCCTCAAGCAAGTTTAGATTATGGAAGTACATTCCGTTTGCTATCACGTATTTATTCACATATACCTACAACGAATATGAATGTGACTACCACAACTGATGAGACTACATCAACTAATGCAATCAATCGACCTGCAGTAATTATTGCAGCAGAAATCCTACTTGGTTGGCTTGGATATGCTTTGGACTTATGTGCAACTGGCCGACTTAGCGTAACTGGACTAAAAATCACCTTATCAACGTTAACTAATGCAAGACCAGCTGATAAATTTCGATATCACTTCACTCTCTTGTCCGACCCCTCAGGTGCATTAATTTTCTCGAAATTTGAGGCTTATCTACAAGATTTACTCAAATTACCTATAAGTGTTTTCGAAGGCACTAATTTCTACTACACGCCGCAAGCTTCACAAACAATGTTTACTGGGCGTTCTAAAAACGTAGTCCTCGAAGAATTCTTGGATCGTATGCTATCGGATCAAGGACCACAAGTATTAGTATGGCTTACGATTTTTCACCGGTTAATCAGTGTGGCGAATGTCCGACATAACGTACGATGTGAGGGCTGCAAACGTGAACCGATTTGCGGTCTACGCTACAAATGTACTCG]

[-] EMBL CD196514             [CTGTCTGATTATGAGCAAAATGTTGTAACTACGCAACTGTGATATTCCGAACCAACTAAGTGCTTAACATAATGGATTTATGGCGCGTTGTAGAGACATTCAGAGAATTCGGTTTACACCAATTGAATGATCCTCAAGCAAGTTTAGATTATGGAAGTACATTCCGTTTGCTATCACGTATTTATTCACATATACCTACAACGAATATGAATGTGACTACCACAACTGATGAGACTACATCAACTAATGCAATCAATCGACCTGCAGTAATTATTGCAGCAGAAATCCTACTTGGTTGGCTTGGATATGCTTTGGACTTATGTGCAACTGGCCGACTTAGCGTAACTGGACTAAAAATCACCTTATCAACGTTAACTAATGCAAGACCAGCTGATAAATTTCGATAT                                                                                                                                                                                                                                                                                                                                            ]
[+] EMBL CD154373             [                                                                                                                                                                                                                                                                                                                             TTATGTGCAACTGGCCGACTTAGCGTAACTGGACTAAAAATCACCTTATCAACGTTAACTAATGCAAGACCAGCTGATAAATTTCGATATCACTTCACTCTCTTGTCCGACCCCTCAGGTGCATTAATTTTCTCGAAATTTGAGGCTTATCTACAAGATTTACTCAAATTACCTATAAGTGTTTTCGAAGGCACTAATTTCTACTACACGCCGCAAGCTTCACAAACAATGTTTACTGGGCGTTCTAAAAACGTAGTCCTCGAAGAATTCTTGGATCGTATGCTATCGGATCAAGGACCACAAGTATTAGTATGGCTTACGATTTTTCACCGGTTAATCAGTGTGGCGAATGTCCGACATAACGTACGATGTGAGGGCTGCAAACGTGAACCGATTTGCGGTCTACGCTACAAATGTACTCG]




>consensus_7426#0
CTGTCTGATTATGAGCAAAATGTTGTAACTACGCAACTGTGATATTCCGAACCAACTAAG
TGCTTAACATAATGGATTTATGGCGCGTTGTAGAGACATTCAGAGAATTCGGTTTACACC
AATTGAATGATCCTCAAGCAAGTTTAGATTATGGAAGTACATTCCGTTTGCTATCACGTA
TTTATTCACATATACCTACAACGAATATGAATGTGACTACCACAACTGATGAGACTACAT
CAACTAATGCAATCAATCGACCTGCAGTAATTATTGCAGCAGAAATCCTACTTGGTTGGC
TTGGATATGCTTTGGACTTATGTGCAACTGGCCGACTTAGCGTAACTGGACTAAAAATCA
CCTTATCAACGTTAACTAATGCAAGACCAGCTGATAAATTTCGATATCACTTCACTCTCT
TGTCCGACCCCTCAGGTGCATTAATTTTCTCGAAATTTGAGGCTTATCTACAAGATTTAC
TCAAATTACCTATAAGTGTTTTCGAAGGCACTAATTTCTACTACACGCCGCAAGCTTCAC
AAACAATGTTTACTGGGCGTTCTAAAAACGTAGTCCTCGAAGAATTCTTGGATCGTATGC
TATCGGATCAAGGACCACAAGTATTAGTATGGCTTACGATTTTTCACCGGTTAATCAGTG
TGGCGAATGTCCGACATAACGTACGATGTGAGGGCTGCAAACGTGAACCGATTTGCGGTC
TACGCTACAAATGTACTCG

consensusID : consensus_7426#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 574
fasta sequence

                              [TTGACAGCCAATCAACAACGTGGACTAGGCCAAATTTATGCGGACCGCCAGTTCTAATGGATCAGAATACTTCTCAAGTTGTTCCTCCACATTTAACGAACTCAGGTCATCCGCAACAAATTATGCTACAGCATCAACAACAAAGAGGTTCTAATCCTGTTTT-CAAAGCCCGTTAAACAATTATACAAGCCGGACCAAATCAGAATCAGGCTTGCAAAATCCCAGCCTTATTTCACCAAATCCAGCTTCCTTGGGTTTTAGACGACTATTGGCAGAGATGCGTACCAAGCAGTTTGATTCCATACGCTTTGCGGCTTATCGTACTGCGAGCAAGCTTAGATTTATTCAGCAGAGAACATTATTTAACATAATGGATTTATGGCGCGTTGTAGAGACATTCAGAGAATTCGGTTTACACCAATTGAATGATCCTCAAGCAAGTTTAGATTATGGAAGTACATTCCGTTTGCTATCACGTATTTATTCACATATACCTACAACGAATATGAATGTGACTACCACAACTGATGAGACTACATCAACTAATGCAATCAATCGACCTGCAGTAATTATT]

[+] EMBL CD177764             [TTGACAGCCAATCAACAACGTGGACTAGGCCAAATTTATGCGGACCGCCAGTTCTAATGGATCAGAATACTTCTCAAGTTGTTCCTCCACATTTAACGAACTCAGGTCATCCGCAACAAATTATGCTACAGCATCAACAACAAAGAGGTTCTAATCCTGTTTT CAAAGCCCGTTAAACAATTATACAAGCCGGACCAAATCAGAATCAGGCTT                                                                                                                                                                                                                                                                                                                                                                         ]
[+] EMBL CD196823             [                                                                                                                                                            CTGTTTTCCAAAGCCCGTTAAAC ATTATACAAGCCGGACC AATCAG ATCAGGCTTGCAAAATCCCAGCCTTATTTCACCAAATCCAGCTTCCTTGGGTTTTAGACGACTATTGGCAGAGATGCGTACCAAGCAGTTTGATTCCATACGCTTTGCGGCTTATCGTACTGCGAGCAAGCTTAGATTTATTCAGCAGAGAACATTATTTAACATAATGGATTTATGGCGCGTTGTAGAGACATTCAGAGAATTCGGTTTACACCAATTGAATGATCCTCAAGCAAGTTTAGATTATGGAAGTACATTCCGTTTGCTATCACGTATTTATTCACATATACCTACAACGAATATGAATGTGACTACCACAACTGATGAGACTACATCAACTAATGCAATCAATCGACCTGCAGTAATTATT]




>consensus_7426#1
TTGACAGCCAATCAACAACGTGGACTAGGCCAAATTTATGCGGACCGCCAGTTCTAATGG
ATCAGAATACTTCTCAAGTTGTTCCTCCACATTTAACGAACTCAGGTCATCCGCAACAAA
TTATGCTACAGCATCAACAACAAAGAGGTTCTAATCCTGTTTTCAAAGCCCGTTAAACAA
TTATACAAGCCGGACCAAATCAGAATCAGGCTTGCAAAATCCCAGCCTTATTTCACCAAA
TCCAGCTTCCTTGGGTTTTAGACGACTATTGGCAGAGATGCGTACCAAGCAGTTTGATTC
CATACGCTTTGCGGCTTATCGTACTGCGAGCAAGCTTAGATTTATTCAGCAGAGAACATT
ATTTAACATAATGGATTTATGGCGCGTTGTAGAGACATTCAGAGAATTCGGTTTACACCA
ATTGAATGATCCTCAAGCAAGTTTAGATTATGGAAGTACATTCCGTTTGCTATCACGTAT
TTATTCACATATACCTACAACGAATATGAATGTGACTACCACAACTGATGAGACTACATC
AACTAATGCAATCAATCGACCTGCAGTAATTATT

consensusID : consensus_7426#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 402
fasta sequence

                              [ATGGTATCTTGAAGACAGAGCGATATGACAAATAACGTTACTCTAAGTATTTCTCTGTCTTTGATCTTACAGTGTTTCTTAATTAGCATATATATATTTCACAACTGGCCACAGTAATATGTTGTATGATATTTTGTTCTGTTTTGTATCAGGTTGTTCGTCTACTTAGTAGTGATTTCTGTCTGATTATGAGCAAAATGTTGTAACTTCGTAACTGTGATATTCCGAACCAACTAAGTGCGTGAGTCTTTATCTGTTTCATAATCTTTGAAACCACTGGTAAGCATTATAAACTATTAAAATAGACCGATAGTTCACAGCAAAGTAATCAGAATCAAATTATCTAGTTGTTACTGGTGATCGAACAAGCTTGCAGTATGACTACCTAAAGAAGTGCTTTGA]

[+] EMBL CD096994             [ATGGTATCTTGAAGACAGAGCGATATGACAAATAACGTTACTCTAAGTATTTCTCTGTCTTTGATCTTACAGTGTTTCTTAATTAGCATATATATATTTCACAACTGGCCACAGTAATATGTTGTATGATATTTTGTTCTGTTTTGTATCAGGTTGTTCGTCTACTTAGTAGTGATTTCTGTCTGATTATGAGCAAAATGTTGTAACTTCGTAACTGTGATATTCCGAACCAACTAAGTGCGTGAGTCTTTATCTGTTTCATAATCTTTGAAACCACTGGTAAGCATTATAAACTATTAAAATAGACCGATAGTTCACAGCAAAGTAATCAGAATCAAATTATCTAGTTGTTACTGGTGATCGAACAAGCTTGCAGTATGACTACCTAAAGAAGTGCTTTGA]




>consensus_7426#2
ATGGTATCTTGAAGACAGAGCGATATGACAAATAACGTTACTCTAAGTATTTCTCTGTCT
TTGATCTTACAGTGTTTCTTAATTAGCATATATATATTTCACAACTGGCCACAGTAATAT
GTTGTATGATATTTTGTTCTGTTTTGTATCAGGTTGTTCGTCTACTTAGTAGTGATTTCT
GTCTGATTATGAGCAAAATGTTGTAACTTCGTAACTGTGATATTCCGAACCAACTAAGTG
CGTGAGTCTTTATCTGTTTCATAATCTTTGAAACCACTGGTAAGCATTATAAACTATTAA
AATAGACCGATAGTTCACAGCAAAGTAATCAGAATCAAATTATCTAGTTGTTACTGGTGA
TCGAACAAGCTTGCAGTATGACTACCTAAAGAAGTGCTTTGA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_7426#0      CTGTCTGATTATGAGCAAAATGTTGTAACTACGCAACTGTGATATTCCGAACCAACTAAG 60
consensus_7426#1      TTGACAGCCAATCAACAACGTG----GACTAGGCCAAATTTATG---CGGACCGCCAGTT 53
consensus_7426#2      ------------------------------------------------------------
                                                                                  

consensus_7426#0      TGCTTAACATAATGGATTTATGGCGCGTTGTAGAGACATTCAGAGAATTCGGTTTACACC 120
consensus_7426#1      CTAATGGATCAGAATACTTCTCAAGTTGTTCCTCCACATTTAACGAACTCAGGTCATCCG 113
consensus_7426#2      ------------------------------------------------------------
                                                                                  

consensus_7426#0      AATTGAATGATCCTCAAGCAAGTTTAGATTATGGAAGTAC--ATTCCGTTTGCTA--TCA 176
consensus_7426#1      CAACAAATTATGCTACAGCA--TCAACAACAAAGAGGTTCTAATCCTGTTTTCAAAGCCC 171
consensus_7426#2      ------------------------------------------------------------
                                                                                  

consensus_7426#0      CGTATTTATTCACATATACCTACAACGAATATGAATGTGACTACCACAACTGATGAGACT 236
consensus_7426#1      GTTAAACAATTATACA-AGCCGGACCAAATCAGAATCAGGCTTGCA-AAATCCCAGCCTT 229
consensus_7426#2      ---------------------ATGGTATCTTGAAGACAGAGCGATATGACAAATAACGTT 39
                                                   *   *    *      *  *          *

consensus_7426#0      ACATCAACTAATGCAA--TCAATCGACCTGCAGTAATTATTG--CAGCAGAAA--TCCTA 290
consensus_7426#1      ATTTCACCAAATCCAGCTTCCTTGGGTTTTAGACGACTATTG--GCAGAGATGCGTACCA 287
consensus_7426#2      ACTCTAAGTATTTCTCTGTCTTTGATCTTACAGTGTTTCTTAATTAGCATATATATATTT 99
                      *    *   * * *    **  *     *        * **       * *    *    

consensus_7426#0      CTTGGTTGGCTTGG---ATATGCTTTG-GACTTAT-GTGCAACTGGCCGACTTAGCGTAA 345
consensus_7426#1      AGCAGTTTGATTCC---ATACGCTTTGCGGCTTATCGTACTGCGAGCAAGCTTAGATTTA 344
consensus_7426#2      CACAACTGGCCACAGTAATATGTTGTATGATATTTTGTTCTGTTTTGTATCAGGTTGTTC 159
                            * *        *** * * *  *   * * ** *          *      *  

consensus_7426#0      CTGGACTAAAAATCACCTTATCAACGTTAACTAATGCAAGACCAGCTG---ATAAATTTC 402
consensus_7426#1      TTCAGCAGAGAA---CATTATTTAACATAATGGATTTATGGCGCGTTGTAGAGACATTCA 401
consensus_7426#2      GTCTACTTAGTAGTGATTTCTGTCTGATTATGAGCAAAATGTT-GTAACTTCGTAACTGT 218
                       *   *  *  *     ** *      * *       *      *          * *  

consensus_7426#0      GATA--TCACTTCACTCTC-TTGTCCGACCCCTCAGGTGCATTAATTTTCTCGAAATTTG 459
consensus_7426#1      GAGAATTCGGTTTACACCAATTGAATGATCC-TCAAGCAAGTTTAGATTATGGAAGTACA 460
consensus_7426#2      GATATTCCGAACCA-ACTAAGTGCGTGAGTCTTTATCTGTTTCATAATCTTTGAAAC-CA 276
                      ** *   *     *  *    **   **  * * *      *     *  * ***     

consensus_7426#0      AG--GCTTATCTACAAG-ATTTACTCAAAT-TACCTATAAGTGTTTTCGAAGGCACTAAT 515
consensus_7426#1      TTCCGTTTGCTATCACGTATTTATTCACATATACCTACAA-CGAATATGAATG---TGAC 516
consensus_7426#2      CT--GGTAAGCATTATA-AACTATTAAAATAGACCGATAGTTCACAGCAAAG----TAAT 329
                          * *       *   *  ** * * **  *** * *          **     * * 

consensus_7426#0      TTCTACTACACGCCGCAAGCTTCACAAACAATGTTTACTGGGCGTTCTAAAAACGTAGTC 575
consensus_7426#1      TACCACAAC-TGATG-AGACTACATCAACTAATGCAATCAATCGACCTGCAGTAATTATT 574
consensus_7426#2      CAGAATCAAATTATCTAGTTGTTACTGGTGAT--CGAACAAGCTTGCAGTATGACTACCT 387
                          *  *        *      *      *     *     *   *   *    *    

consensus_7426#0      CTCGAAGAATTCTTGGATCGTATGCTATCGGATCAAGGACCACAAGTATTAGTATGGCTT 635
consensus_7426#1      ------------------------------------------------------------
consensus_7426#2      AAAGAAGTGCTTTGA--------------------------------------------- 402
                                                                                  

consensus_7426#0      ACGATTTTTCACCGGTTAATCAGTGTGGCGAATGTCCGACATAACGTACGATGTGAGGGC 695
consensus_7426#1      ------------------------------------------------------------
consensus_7426#2      ------------------------------------------------------------
                                                                                  

consensus_7426#0      TGCAAACGTGAACCGATTTGCGGTCTACGCTACAAATGTACTCG 739
consensus_7426#1      --------------------------------------------
consensus_7426#2      --------------------------------------------