cluster # 7862

These datas are free for academic use only, please contact me for any other use.

Schistosoma mansoni
cluster # 7862 cluster # 7862 Sequences # 5 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_7862#0 length = 1069 sequences # 4

consensus_7862#1 length = 491 sequences # 1

consensusID : consensus_7862#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 1069
fasta sequence

                              [CCGAGCCAAGATTCGGCACGAGGTCGGTGGGCTGTTACTATCTGTGCATTAAAAAGAACGAACTTGCAAGACGACATCTTGTAAAAGCTTCACAGCTAGACAGAAGATATGGTCCTATATGGCTTACACTTGGGCATGCATTTGCTGCTGATGGTGAACATGATCAAGCTATTGCTTCCTATTGTACAGCTGCTCAAGTTATTCGAGGTTCGCATATTCCTATAATGTATATTGGTATTGAATACAGTGCTAGCAATAATCGCAATCTAGCTGAACGATTTCTTAATCAAGCCTATTTAATTAGTCCAAGTGATCCTTTTGTTTTACATGAATTAGGCACATTGGCCTTTGAATCACAAAAATATGTAGACGCTACAAGGTTCTTGGTTCGTGCTTATGAAAGGGCTTGTGAATTAAGTGGACAAGTTCCTTCGCCTTTCTGGGAGCCCCTTGTTAATAATTTAGCACATTCTTATAGGAAAATGGGACTTTACAGTCAGGCAATAGCTATGCATGAACTTGCACTTCGCTTAGTGCCTGAGTCTCCAACAACATTTGCATGTTTGGCAATGTTGCATGCAATCAATGGTAACCTT-GAAGTTGCAGTAGACTATCTTCACCGGTCCGTTGGGGTCCAACCATCAAGCTGTGGGTCTACTTCTAGCAATGTGGCTTCTACGATGCTGAATGTATGTATTGAAGCGCT-ACGGGCAAAGGAATTATGCTTCGAATCGCAAAGTTGGAAAAGATATTCCAGATACTCTTCCTGAAAATCTTATGACTTCTGCTGGACCAGGAAGTCTCCCAGGATCCAACCGAATTCGTTTTAAAATGGTGCCAAGTGAAACTGTAAAGCCTAACAAATCGGTGCTTCAGTTGGACGTTAATTATAGAGAAAAATCTGCTAACGCTCCTGACATATCGCTGCATACAAGCGATGAAGATGTGTCCATGGATCTTGGTTAACTACTTGGTTTTATATAACTGATTGCTATTGTCTACATAATAACCGCATATTCTTTTGTAACTAGATGTGAAATAAGACTAAGCTTTAAAAAAAAAAAAAAAA]

[+] EMBL CD082674             [CCGAGCCAAGATTCGGCACGAGGTCGGTGGGCTGTTACTATCTGTGCATTAAAAAGAACGAACTTGCAAGACGACATCTTGTAAAAGCTTCACAGCTAGACAGAAGATATGGTCCTATATGGCTTACACTTGGGCATGCATTTGCTGCTGATGGTGAACATGATCAAGCTATTGCTTCCTATTGTACAGCTGCTCAAGTTATTCGAGGTTCGCATATTCCTATAATGTATATTGGTATTGAATACAGTGCTAGCAATAATCGCAATCTAGCTGAACGATTTCTTAATCAAGCCTATTTAATTAGTCCAAGTGATCCTTTTGTTTTACATGAATTAGGCACATTGGCCTTTGAATCACAAAAATATGTAGACGCTACAAGGTTCTTGGTTCGTGCTTATGAAAGGGCTTGTGAATTAAGTGGACAAGTTCCTTCGCCTTTCTGGGAGCCCCTTGTTAATAATTTAGCACATTCTTATAGGAAAATGGGACTTTACAGTCAGGCAATAGCTATGCATGAACTTGCACTTCGCTTAGTGCCTGAGTCTCCAACAACATTTGCATGTTTGGCAATGTTGCATGCAATCAATGGTAACCTT GAAGTTGCAGTAGACTATCTTCACCGGTCCGTTGGGGTCCAACCATCAAGCTGTGGGTCTACTTCTAGCAATGTGGCTTCTACGATGCTGAATGTATGTATTGAAGCGCT ACGGGC                                                                                                                                                                                                                                                                                                                                                                     ]
[+] EMBL SMAA17941            [                                                                                                                                                                                                                                                                                                                                                                   ACAAAAATATGTAGACGCTACAAGGTTCTTGGTTCGTGCTTATGAAAGGGCTTGTGAATTAAGTGGACAAGTTCCTTCGCCTTTCTGGGAGCCCCTTGTTAATAATTTAGCACATTCTTATAGGAAAATGGGACTTTACAGTCAGGCAATAGCTATGCATGAACTTGCACTTCGCTTAGTGCCTGAGTCTCCAACAACATTTGCATGTTTGGCAATGTTGCATGCAATCAATGGTAACCTTGGAAGTTGCAGTAGACTATCTTCcacg                                                                                                                                                                                                                                                                                                                                                                                                                                                                ]
[-] EMBL CD146271             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        AATGTTGCATGCAATCAATGGTAACCTT GAAGTTGCAGTAGACTATCTTCACCGGTCCGTTGGGGTCCAACCATCAAGCTGTGGGTCTACTTCTAGCAATGTGGCTTCTACGATGCTG                                                                                                                                                                                                                                                                                                                                                                                                ]
[-] EMBL AI394877             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        GGCCCACCCATCAAGCTGTGGGTCTACTTCTAGCAATGTGGCTTCTACGATGCTGAATGTATGTATTGAAGCGCTAACGGGCAAAGGAATTATGCTTCGAATCGCAAAGTTGGAAAAGATATTCCAGATACTCTTCCTGAAAATCTTATGACTTCTGCTGGACCAGGAAGTCTCCCAGGATCCAACCGAATTCGTTTTAAAATGGTGCCAAGTGAAACTGTAAAGCCTAACAAATCGGTGCTTCAGTTGGACGTTAATTATAGAGAAAAATCTGCTAACGCTCCTGACATATCGCTGCATACAAGCGATGAAGATGTGTCCATGGATCTTGGTTAACTACTTGGTTTTATATAACTGATTGCTATTGTCTACATAATAACCGCATATTCTTTTGTAACTAGATGTGAAATAAGACTAAGCTTTAAAAAAAAAAAAAAAA]




>consensus_7862#0
CCGAGCCAAGATTCGGCACGAGGTCGGTGGGCTGTTACTATCTGTGCATTAAAAAGAACG
AACTTGCAAGACGACATCTTGTAAAAGCTTCACAGCTAGACAGAAGATATGGTCCTATAT
GGCTTACACTTGGGCATGCATTTGCTGCTGATGGTGAACATGATCAAGCTATTGCTTCCT
ATTGTACAGCTGCTCAAGTTATTCGAGGTTCGCATATTCCTATAATGTATATTGGTATTG
AATACAGTGCTAGCAATAATCGCAATCTAGCTGAACGATTTCTTAATCAAGCCTATTTAA
TTAGTCCAAGTGATCCTTTTGTTTTACATGAATTAGGCACATTGGCCTTTGAATCACAAA
AATATGTAGACGCTACAAGGTTCTTGGTTCGTGCTTATGAAAGGGCTTGTGAATTAAGTG
GACAAGTTCCTTCGCCTTTCTGGGAGCCCCTTGTTAATAATTTAGCACATTCTTATAGGA
AAATGGGACTTTACAGTCAGGCAATAGCTATGCATGAACTTGCACTTCGCTTAGTGCCTG
AGTCTCCAACAACATTTGCATGTTTGGCAATGTTGCATGCAATCAATGGTAACCTTGAAG
TTGCAGTAGACTATCTTCACCGGTCCGTTGGGGTCCAACCATCAAGCTGTGGGTCTACTT
CTAGCAATGTGGCTTCTACGATGCTGAATGTATGTATTGAAGCGCTACGGGCAAAGGAAT
TATGCTTCGAATCGCAAAGTTGGAAAAGATATTCCAGATACTCTTCCTGAAAATCTTATG
ACTTCTGCTGGACCAGGAAGTCTCCCAGGATCCAACCGAATTCGTTTTAAAATGGTGCCA
AGTGAAACTGTAAAGCCTAACAAATCGGTGCTTCAGTTGGACGTTAATTATAGAGAAAAA
TCTGCTAACGCTCCTGACATATCGCTGCATACAAGCGATGAAGATGTGTCCATGGATCTT
GGTTAACTACTTGGTTTTATATAACTGATTGCTATTGTCTACATAATAACCGCATATTCT
TTTGTAACTAGATGTGAAATAAGACTAAGCTTTAAAAAAAAAAAAAAAA

consensusID : consensus_7862#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 491
fasta sequence

                              [CTCCTAGCCAAAGCCCAAACAATTTAAGTTGGAANGTGAGGAACAGGGACCTTAGTGAGAGACAATCTCTACGGGCCCTTGGGGCAACCCTAAAATGTGGGGCTACCTCCAAGANGTGGCCTCCAGATGCTGAATGTATGAATTGAACGCTTANGGGCAAAGGAATTAATGCTCCGAACCGCAAAGTGGAAAAAGATATCCAGATAATCCTCCCTGAAAACCTTATGACTTCTGCGGACCAGGAAAGTCTCCCCGGGATCCAACCGAATCCGTTTTAAAATGGTGCCAAGTAAAACTGTAAAGCCTAACAAATCGGTGCTTCAGTTGGACGTTAATTATAGAGAAAAATCTGTAACGCGCCTGACATATCGCTGCATACAAGCGATGAAGATGTGTCCATGGATCTTGGTTAACTACTTGGTTTTATATAACTGATTGCTATTGTCTACATAATAACCGCATATTCTTTTGTAACTAGATGTGAAATAAGA]

[-] EMBL SMAA69902            [CTCCTAGCCAAAGCCCAAACAATTTAAGTTGGAANGTGAGGAACAGGGACCTTAGTGAGAGACAATCTCTACGGGCCCTTGGGGCAACCCTAAAATGTGGGGCTACCTCCAAGANGTGGCCTCCAGATGCTGAATGTATGAATTGAACGCTTANGGGCAAAGGAATTAATGCTCCGAACCGCAAAGTGGAAAAAGATATCCAGATAATCCTCCCTGAAAACCTTATGACTTCTGCGGACCAGGAAAGTCTCCCCGGGATCCAACCGAATCCGTTTTAAAATGGTGCCAAGTAAAACTGTAAAGCCTAACAAATCGGTGCTTCAGTTGGACGTTAATTATAGAGAAAAATCTGTAACGCGCCTGACATATCGCTGCATACAAGCGATGAAGATGTGTCCATGGATCTTGGTTAACTACTTGGTTTTATATAACTGATTGCTATTGTCTACATAATAACCGCATATTCTTTTGTAACTAGATGTGAAATAAGA]




>consensus_7862#1
CTCCTAGCCAAAGCCCAAACAATTTAAGTTGGAANGTGAGGAACAGGGACCTTAGTGAGA
GACAATCTCTACGGGCCCTTGGGGCAACCCTAAAATGTGGGGCTACCTCCAAGANGTGGC
CTCCAGATGCTGAATGTATGAATTGAACGCTTANGGGCAAAGGAATTAATGCTCCGAACC
GCAAAGTGGAAAAAGATATCCAGATAATCCTCCCTGAAAACCTTATGACTTCTGCGGACC
AGGAAAGTCTCCCCGGGATCCAACCGAATCCGTTTTAAAATGGTGCCAAGTAAAACTGTA
AAGCCTAACAAATCGGTGCTTCAGTTGGACGTTAATTATAGAGAAAAATCTGTAACGCGC
CTGACATATCGCTGCATACAAGCGATGAAGATGTGTCCATGGATCTTGGTTAACTACTTG
GTTTTATATAACTGATTGCTATTGTCTACATAATAACCGCATATTCTTTTGTAACTAGAT
GTGAAATAAGA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_7862#0      CCGAGCCAAGATTCGGCACGAGGTCGGTGGGCTGTTACTATCTGTGCATTAAAAAGAACG 60
consensus_7862#1      ------------------------------------------------------------
                                                                                  

consensus_7862#0      AACTTGCAAGACGACATCTTGTAAAAGCTTCACAGCTAGACAGAAGATATGGTCCTATAT 120
consensus_7862#1      ------------------------------------------------------------
                                                                                  

consensus_7862#0      GGCTTACACTTGGGCATGCATTTGCTGCTGATGGTGAACATGATCAAGCTATTGCTTCCT 180
consensus_7862#1      ------------------------------------------------------------
                                                                                  

consensus_7862#0      ATTGTACAGCTGCTCAAGTTATTCGAGGTTCGCATATTCCTATAATGTATATTGGTATTG 240
consensus_7862#1      ------------------------------------------------------------
                                                                                  

consensus_7862#0      AATACAGTGCTAGCAATAATCGCAATCTAGCTGAACGATTTCTTAATCAAGCCTATTTAA 300
consensus_7862#1      ------------------------------------------------------------
                                                                                  

consensus_7862#0      TTAGTCCAAGTGATCCTTTTGTTTTACATGAATTAGGCACATTGGCCTTTGAATCACAAA 360
consensus_7862#1      ------------------------------------------------------------
                                                                                  

consensus_7862#0      AATATGTAGACGCTACAAGGTTCTTGGTTCGTGCTTATGAAAGGGCTTGTGAATTAAGTG 420
consensus_7862#1      ------------------------------------------------------------
                                                                                  

consensus_7862#0      GACAAGTTCCTTCGCCTTTCTGGGAGCCCCTTGTTAATAATTTAGCACATTCTTATAGGA 480
consensus_7862#1      ------------------------------------------------------------
                                                                                  

consensus_7862#0      AAATGGGACTTTACAGTCAGGCAATAGCTATGCATGAACTTGCACTTCGCTTAGTGCCTG 540
consensus_7862#1      ------------------------------------------------------------
                                                                                  

consensus_7862#0      AGTCTCCAACAACATTTGCATGTTTGGCAATGTTGCATGCAATCAATGGTAACCTTGAAG 600
consensus_7862#1      -CTCCTAGCCAAAGCCCAAACAATT--TAAGTTGGAANGTGAGGAACAGGGACCTTA--- 54
                        **     ***       *   **   **  * * * *  *  **  *  *****    

consensus_7862#0      TTGCAGTAGACTATCTTCACCGGTCCGTTGGGGTCCAACCATCAAGCTGTGGGTCTACTT 660
consensus_7862#1      --GTGAGAGACAATCTCTACGGGCCC-TTGGGG--CAACC-CTAAAATGTGGGGCTACCT 108
                        *    **** ****  ** ** ** ******  *****   **  ****** **** *

consensus_7862#0      CTAGCAATGTGGCTTCTACGATGCTGAATGTATGTATTGAAGCGCTACGGGCAAAGGAAT 720
consensus_7862#1      CCAA-GANGTGGCCTCCA-GATGCTGAATGTATGAATTGAACGCTTANGGGCAAAGGAAT 166
                      * *   * ***** ** * *************** ******    ** ************

consensus_7862#0      TA-TGCTTCGAATCGCAAAGTTGGAAAAGATATTCCAGATACTCTTCCTGAAAATCTTAT 779
consensus_7862#1      TAATGCTCCGAACCGCAAAGTGGAAAAAGATATCCAGATAATCCTCCCTGAAAACCTTAT 226
                      ** **** **** ******** * ********* *     *  ** ******** *****

consensus_7862#0      GACTTCTGCTGGACCAGGAAGTCTCCC-AGGATCCAACCGAATTCGTTTTAAAATGGTGC 838
consensus_7862#1      GACTTCTGCGGACCAGGAAAGTCTCCCCGGGATCCAACCGAATCCGTTTTAAAATGGTGC 286
                      ********* *  *  * *********  ************** ****************

consensus_7862#0      CAAGTGAAACTGTAAAGCCTAACAAATCGGTGCTTCAGTTGGACGTTAATTATAGAGAAA 898
consensus_7862#1      CAAGTAAAACTGTAAAGCCTAACAAATCGGTGCTTCAGTTGGACGTTAATTATAGAGAAA 346
                      ***** ******************************************************

consensus_7862#0      AATCTGCTAACGCTCCTGACATATCGCTGCATACAAGCGATGAAGATGTGTCCATGGATC 958
consensus_7862#1      AATCTG-TAACGCGCCTGACATATCGCTGCATACAAGCGATGAAGATGTGTCCATGGATC 405
                      ****** ****** **********************************************

consensus_7862#0      TTGGTTAACTACTTGGTTTTATATAACTGATTGCTATTGTCTACATAATAACCGCATATT 1018
consensus_7862#1      TTGGTTAACTACTTGGTTTTATATAACTGATTGCTATTGTCTACATAATAACCGCATATT 465
                      ************************************************************

consensus_7862#0      CTTTTGTAACTAGATGTGAAATAAGACTAAGCTTTAAAAAAAAAAAAAAAA 1069
consensus_7862#1      CTTTTGTAACTAGATGTGAAATAAGA------------------------- 491
                      **************************