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These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8264#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 912 fasta sequence
[TTTTTTTTTTTTTTTTTTTTGATTAGTAGGATTCGTATTATATTAGTTTATTTTACAATATGGGGATGACCTGTGATTCTGAAACAAAAATATTATGTAAACTGTTTGAATTTATCAGTTAAATTGCGTGGCGGTAGCTTAGAACATATAAGTTCTAAGACAGAGTATGAATAGTGTCGAATAAAGGAACGCCAAACAATTGCATCATGGATTGTAACCATAACATGAAATGGCCAAAACTGAGAGAACT-GGATCTAAGTAAACGAATATTTGTACATATAAATAAAAATTTGAAAATATTTAATATCTCATAGGTGAGATCTTGAAGACATCTGATTTCTCAAAATACTAGGGATAGGTTGCTCTGTGTTTCGACTTAAACGGGAAATCTCAGCATTTAATCGTGCATTAATAATTGCCTGCTCAACATTATGTTCAACTTCGTCATCTTCGTCTTCTTTTTCAATATTTTCCCCTTCTTCATCATCATTTTGTAGACTTTCTTTAGCTAACTTTACGGCTAAAAACTCGTTGTAATGTTGCTTCCGTTTTTCACGAAATTTTCTCTGATGTTCATCTTCCTCCTGGTCGAGTTTTGTGGCACTTGGCAGCTGCTGATCAGGATCCTTTGAAGCGGCAGAAAGCCTGGCCGCTAAATCTTCCGGAGTAAATAAGGGTCCAGTATTGGTGGCAGAACCATCTTCAGAGTCAAAAACGTATGGTGTTTTTGGTTCTTCAATTTTCATATGACCATACGTCTTGTCTGCGGGATGATAAGTAGCTAGAATATTTGATTCATCCCACTGGAAGCTTTTCTGAGGTCCCTGATCACTGGACTTCTTCAATATACTTTTAGAAACCTTTGTTTCTTCCACAGCCTTGGACATCCCTCGTGCCGAATTCTGGCCTGCG]
[+] EMBL AI395008 [TTTTTTTTTTTTTTTTTTTTGATTAGTAGGATTCGTATTATATTAGTTTATTTTACAATATGGGGATGACCTGTGATTCTGAAACAAAAATATTATGTAAACTGTTTGAATTTATCAGTTAAATTGCGTGGCGGTAGCTTAGAACATATAAGTTCTAAGACAGAGTATGAATAGTGTCGAATAAAGGAACGCCAAACAATTGCATCATGGATTGTAACCATAACATGAAATGGGCAAAACGGAGAGAACTGGGTTCAAGGTAAA ]
[+] EMBL AI395170 [ TTTTTTTTTTTTTTTTGATTAGTAGGATTCGTATTATATTAGTTTATTTTACAATATGGGGATGACCTGTGATTCTGAAACAAAAATATTATGTAAACTGTTTGAATTTATCAGTTAAATTGCGTGGCGGTAGCTTAGAACATATAAGTTCTAAGACAGAGTATGAATAGTGTCGAATAAAGGAACGCCAAACAATTGCATCATGGATTGTAACCATAACATGAAATGGCCAAAACTGAGAGAACT GGATCTAAGTAAACGAATATTTGTACATATAAATAAAAATTTGAAAATATTTAATATCTCATAGGTGAGATCTTGAAGACATCTGATTTCTCAAAATACTAGGGATAGGTTGCTCTGTGTTTCGACTTAAACGGGAAATCTCAGCATTTAATCGTGCATTAATAATTGCCTGCTCAACATTATGTTCAACTTCGTCATCTTCGTCTTCTTTTTCAATATTTTCCCCTTCTTCATCATCATTTTGTAGACTTTCTTTAGCTAACTTTACGGCTAAAAACTCGTTGTAATGTTGC ]
[+] EMBL CD074875 [ GATTCGTATTATATTAGTTTATTTTACAATATGGGGATGACCTGTGATTCTGAAACAAAAATATTATGTAAACTGTTTGAATTTATCAGTTAAATTGCGTGGCGGTAGCTTAGAACATATAAGTTCTAAGACAGAGTATGAATAGTGTCGAATAAAGGAACGCCAAACAATTGCATCATGGATTGTAACCATAACATGAAATGGCCAAAACTGAGAGAACT GGATCTAAGTAAACGAATATTTGTACATATAAATAAAAATTTGAAAATATTTAATATCTCATAGGTGAGATCTTGAAGAATTCTGATTTCTCAAAATACTAGGGATAGGTTGCTCTGTGTTTCGACTTAAACGGGAAATCTCAGCATTTAATCGTGCATTAATAATTGCCTGCTCAACATTATGTTCAACTTCTTCATCTTCGTCTTCTTTTTCAATATTTTCCCCTTCTTCATCATCATTTTGTAGACTTTCTTTAGCTAGCTTTACGGCTAAAAACTCGTTGTAATGTTGCTTCCGTTTTTCACGAAATTTTCTCTGATGTTCATCTTCCTCCTGGTCGAGTTTTGTGGCACTTGGCAGCTGCTGATCAGGATCCTTTGAAGCGGCAGAAAGCCTGGCCGCTAAATCTTCCG ]
[-] EMBL CD078194 [ ATCTTCCTCCTGGTCGAGTTNTGTGGCACTTGGCAGCTGCTGATCAGGATCCTTTGAAGCGGCAGAAAGCCTGGCCGCTAAATCTTCCGGAGTAAATAAGGGTCCAGTATTGGTGGCAGAACCATCTTCAGAGTCAAAAACGTATGGTGTTTTTGGTTCTTCAATTTTCATATGACCATACGTCTTGTCTGCGGGATGATAAGTAGCTAGAATATTTGATTCATCCCACTGGAAGCTTTTCTGAGGTCCCTGATCACTGGACTTCTTCAATATACTTTTAGAAACCTTTGTTTCTTCCACAGCCTTGGACATCCCTCGTGCCGAATTCTGGCCTGCG]
consensusID : consensus_8264#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 532 fasta sequence
[NNNNNNNNNNNNNATATTTAATATCTCATAGGTGAGATCTTGAAGAATTCTGATTTCTCAAAATACTAGGGATAGGTTGCTCTGTGTTTCGACTTAAACGGGAAATCTCAGCATTTAATCGTGCATTAATAATTGCCTGCTCAACATTATGTTCAACTTCTTCCCCTTCTTCATCATCATTTTGTAGACTTTCTTTAGCTAGCTTTACGGCTAAAAACTCGTTGTAATGTTGCTTCCGTTTTTCACGAAATTTTCTCTGATGTTCATCTTCCTCCTGGTCGAGTTTTGTGGCACTGAAGCGGCAGAAAGCCTGGCCGCTAAATCTTCCGGAGTAAATAAGGGTCCAGTATTGGTGGCAGAACCATCTTCAGAGTCAAAAACGTATGGTGTTTTTGGTTCTTCAATTTTCATATGACCATAGCTAGAATATTTGATTCATCCCACTGGAAGCTTTTCTGAGGTCCCTGATCACTGGACTTCTTCAATATACTTTTAGAAACCTTTGTTTCTTCCACAGCCTGGACATCGCCTC]
[-] EMBL CD081049 [NNNNNNNNNNNNNATATTTAATATCTCATAGGTGAGATCTTGAAGAATTCTGATTTCTCAAAATACTAGGGATAGGTTGCTCTGTGTTTCGACTTAAACGGGAAATCTCAGCATTTAATCGTGCATTAATAATTGCCTGCTCAACATTATGTTCAACTTCTTCCCCTTCTTCATCATCATTTTGTAGACTTTCTTTAGCTAGCTTTACGGCTAAAAACTCGTTGTAATGTTGCTTCCGTTTTTCACGAAATTTTCTCTGATGTTCATCTTCCTCCTGGTCGAGTTTTGTGGCACTGAAGCGGCAGAAAGCCTGGCCGCTAAATCTTCCGGAGTAAATAAGGGTCCAGTATTGGTGGCAGAACCATCTTCAGAGTCAAAAACGTATGGTGTTTTTGGTTCTTCAATTTTCATATGACCATAGCTAGAATATTTGATTCATCCCACTGGAAGCTTTTCTGAGGTCCCTGATCACTGGACTTCTTCAATATACTTTTAGAAACCTTTGTTTCTTCCACAGCCTGGACATCGCCTC]
[-] EMBL CD146312 [ TCTTCATCATCATTTTGTAGACTTTCTTTAGCTAGCTTTACGGCTAAAAACTCGTTGTAATGTTGCTTCCGTTTTTCACGAAATTTTCTCTGATGTTCATCTTC ]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_8264#0 TTTTTTTTTTTTTTTTTTTTGATTAGTAGGATTCGTATTATATTAGTTTATTTTACAATA 60
consensus_8264#1 ------------------------------------------------------------
consensus_8264#0 TGGGGATGACCTGTGATTCTGAAACAAAAATATTATGTAAACTGTTTGAATTTATCAGTT 120
consensus_8264#1 ------------------------------------------------------------
consensus_8264#0 AAATTGCGTGGCGGTAGCTTAGAACATATAAGTTCTAAGACAGAGTATGAATAGTGTCGA 180
consensus_8264#1 ------------------------------------------------------------
consensus_8264#0 ATAAAGGAACGCCAAACAATTGCATCATGGATTGTAACCATAACATGAAATGGCCAAAAC 240
consensus_8264#1 ------------------------------------------------------------
consensus_8264#0 TGAGAGAACTGGATCTAAGTAAACGAATATTTGTACATATAAATAAAAATTTGAAAATAT 300
consensus_8264#1 -------------------------------------------NNNNNNNNNNNNNATAT 17
****
consensus_8264#0 TTAATATCTCATAGGTGAGATCTTGAAGACATCTGATTTCTCAAAATACTAGGGATAGGT 360
consensus_8264#1 TTAATATCTCATAGGTGAGATCTTGAAGAATTCTGATTTCTCAAAATACTAGGGATAGGT 77
***************************** *****************************
consensus_8264#0 TGCTCTGTGTTTCGACTTAAACGGGAAATCTCAGCATTTAATCGTGCATTAATAATTGCC 420
consensus_8264#1 TGCTCTGTGTTTCGACTTAAACGGGAAATCTCAGCATTTAATCGTGCATTAATAATTGCC 137
************************************************************
consensus_8264#0 TGCTCAACATTATGTTCAACTTCGTCATCTTCGTCTTCTTTTTCAATATTTTCCCCTTCT 480
consensus_8264#1 TGCTCAACATTATGTTCAACTTC---------------------------TTCCCCTTCT 170
*********************** **********
consensus_8264#0 TCATCATCATTTTGTAGACTTTCTTTAGCTAACTTTACGGCTAAAAACTCGTTGTAATGT 540
consensus_8264#1 TCATCATCATTTTGTAGACTTTCTTTAGCTAGCTTTACGGCTAAAAACTCGTTGTAATGT 230
******************************* ****************************
consensus_8264#0 TGCTTCCGTTTTTCACGAAATTTTCTCTGATGTTCATCTTCCTCCTGGTCGAGTTTTGTG 600
consensus_8264#1 TGCTTCCGTTTTTCACGAAATTTTCTCTGATGTTCATCTTCCTCCTGGTCGAGTTTTGTG 290
************************************************************
consensus_8264#0 GCACTTGGCAGCTGCTGATCAGGATCCTTTGAAGCGGCAGAAAGCCTGGCCGCTAAATCT 660
consensus_8264#1 GCACT-------------------------GAAGCGGCAGAAAGCCTGGCCGCTAAATCT 325
***** ******************************
consensus_8264#0 TCCGGAGTAAATAAGGGTCCAGTATTGGTGGCAGAACCATCTTCAGAGTCAAAAACGTAT 720
consensus_8264#1 TCCGGAGTAAATAAGGGTCCAGTATTGGTGGCAGAACCATCTTCAGAGTCAAAAACGTAT 385
************************************************************
consensus_8264#0 GGTGTTTTTGGTTCTTCAATTTTCATATGACCATACGTCTTGTCTGCGGGATGATAAGTA 780
consensus_8264#1 GGTGTTTTTGGTTCTTCAATTTTCATATGACCATA------------------------- 420
***********************************
consensus_8264#0 GCTAGAATATTTGATTCATCCCACTGGAAGCTTTTCTGAGGTCCCTGATCACTGGACTTC 840
consensus_8264#1 GCTAGAATATTTGATTCATCCCACTGGAAGCTTTTCTGAGGTCCCTGATCACTGGACTTC 480
************************************************************
consensus_8264#0 TTCAATATACTTTTAGAAACCTTTGTTTCTTCCACAGCCTTGGACATC-CCTCGTGCCGA 899
consensus_8264#1 TTCAATATACTTTTAGAAACCTTTGTTTCTTCCACAGCCT-GGACATCGCCTC------- 532
**************************************** ******* ****
consensus_8264#0 ATTCTGGCCTGCG 912
consensus_8264#1 -------------
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| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||