cluster # 8736

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Schistosoma mansoni
cluster # 8736 cluster # 8736 Sequences # 7 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_8736#0 length = 784 sequences # 3

consensus_8736#1 length = 674 sequences # 3
consensus_8736#2 length = 275 sequences # 1

consensusID : consensus_8736#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 784
fasta sequence

                              [AACTAAGCTGATTAGTTTAGTCGGGAGTAATCTTTTTTGTGGAGATTGGTCCCATTTGTACATTGTATTTGTTTGTTTGTTTAATATTCCTATTCTTAGATGATGACAGTATCCCATCAACGTAGAATGGTCACTGGTGATCATTTATTCTAAATTATTGATTATCTGTACTCTTGGTAGATTTTATGTATGATACAATTTTTGTCCACTGAATGAATTTTTTTCACTTTTTTCCTCTCTTGTTCCAAACAATTAGGCTCATCCAGAAGGCGTTGTCAGTGTAACATTTTCTACACCAGAAGAAGCAGATACAGGAATCAAATTTCTATCTAAGGCATTATTTGTTGATTATCCTGGTTCTGGAGGACCTAGACAATTAGAAGCAGAACGTTGGGATGGTAAAACTAATTATTCAGTATCTGAATCTAAAGATAAAGAGGCCAGTCGATTACAAAGTTGGGATGAATATCTTGGAGGTGATAGTTCTTCATCCGATGAAGAGACGAATACTCAAGCTAGTATTAGTGATAATAACAATAATAATGACTGTGATAATAATACTGAATCCAGTGGAGTAGATACTACTTCACGAAAATCAGAATTAGCATTTGATGTACCGTCAGATTATTGGGAAAGATTAAGTGATGAGAGTCAGTCCAGCGGTGTGGATACAGATGATGAGAAATGGTGGGAGTGGAGCTGAGACATCATAGATTATCTTTCAC-ACTATAGNGNCTCTTTGCATANTTCATTGNACAAATAGNCCTCTGNNTAATNTNTNTNA]

[+] EMBL CD082409             [AACTAAGCTGATTAGTTTAGTCGGGAGTAATCTTTTTTGTGGAGATTGGTCCCATTTGTACATTGTATTTGTTTGTTTGTTTAATATTCCTATTCTTAGATGATGACAGTATCCCATCAACGTAGAATGGTCACTGGTGATCATTTATTCTAAATTATTGATTATCTGTACTCTTGGTAGATTTTATGTATGATACAATTTTTGTCCACTGAATGAATTTTTTTCACTTTTTTCCTCTCTTGTTCCAAACAATTAGGCTCATCCAGAAGGCGTTGTCAGTGTAACATTTTCTACACCAGAAGAAGCAGATACAGGAATCAAATTTCTATCTAAGGCATTATTTGTTGATTATCCTGGTTCTGGAGGACCTAGACAATTAGAAGCAGAACGTTGGGATGGTAAAACTAATTATTCAGTATCTGAATCTAAAGATAAAGAGGCCAGTCGATTACAAAGTTGGGATGAATATCTTGGAGGTGATAGTTCTTCATCCGATGAAGAGACGAATACTCAAGCTAGTATTAGTGATAATAACAATAATAATGACTGTGATAATAATACTGAATCCAGTGGAGTAGATACTACTTCACGAAAATCAGAATTAGCATTTGATGTACCGTCAGATTATTGGGAAAGATTAAGTGATGAGAGTCAGTCCAGCGGTGTGGATACAGATGATGAGAAATGGTGGGAGTGGAGCTGAGACATCATAGATTATCTTTCAC ACTATAGNGNCTCTTTGCATANTTCATTGNACAAATAGNCCTCTGNNTAATNTNTNTN ]
[-] EMBL CD076009             [                                                                                                                                                                                                                   AATGAATTTTTTTCACTTTTTTCCTCTCTTGTTCCAAACAATTAGGCTCATCCAGAAGGCGTTGTCAGTGTAACATTTTCTACACCAGAAGAAGCAGATACAGGAATCAAATTTCTATCTAAGGCATTATTTGTTGATTATCCTGGTTCTGGAGGACCTAGACAATTAGAAGCAGAACGTTGGGATGGTAAAACTAATTATTCAGTATCTGAATCTAAAGATAAAGAGGCCAGTCGATTACAAAGTTGGGATGAATATCTTGGAGGTGATAGTTCTTCATCCGATGAAGAGACGAATACTCAAGCTAGTATTAGTGATAATAACAATAATAATGACTGTGATAATAATACTGAATCCAGTGGAGTAGATACTACTTCACGAAAATCAGAATTAGCATTTGATGTACCGTCAGATTATTGGGAAAGATTAAGTGATGAGAGTCAGTCCAGCGGTGTGGATACAGATGATGAG AATGGTGGGAGTGGAGCTGAGACATCATAGATTATC TTCACAACTATAGTGTCTCTTTGCATATTTCATTGTACAAATAG CCTCTGTATAAatatatata]
[-] EMBL CD146521             [                                                                                                                                                                                                                                                                                                                             TCAAATTTCTATCTAAGGCATTATTTGTTGATTATCCTGGTTCTGGAGGACCTAGACAATTAGAAGCAGAACGTTGGGATGGTAAAACTAATTATTCAGTATCTGAATCTAAAGATAAAGAGGCCAGTCGATTACAAAGTTGGGATGAATATCTTGGAGGTGATAGTTCTTCATCCGATGAAGAGACGAATACTCAAGCTAGTATTAGTGATAATAACAATAATAATGACTGTGATAATAATACTGAATCCAGTGGAGTAGATGCTACTTCACGAAAATCAGAATTAGCATTTGATGTACCGTCAGATTATTGGGAAAGATTAAGTGATGAGAGTCAGTCCAGCGGTGTGGATACAGA                                                                                                              ]




>consensus_8736#0
AACTAAGCTGATTAGTTTAGTCGGGAGTAATCTTTTTTGTGGAGATTGGTCCCATTTGTA
CATTGTATTTGTTTGTTTGTTTAATATTCCTATTCTTAGATGATGACAGTATCCCATCAA
CGTAGAATGGTCACTGGTGATCATTTATTCTAAATTATTGATTATCTGTACTCTTGGTAG
ATTTTATGTATGATACAATTTTTGTCCACTGAATGAATTTTTTTCACTTTTTTCCTCTCT
TGTTCCAAACAATTAGGCTCATCCAGAAGGCGTTGTCAGTGTAACATTTTCTACACCAGA
AGAAGCAGATACAGGAATCAAATTTCTATCTAAGGCATTATTTGTTGATTATCCTGGTTC
TGGAGGACCTAGACAATTAGAAGCAGAACGTTGGGATGGTAAAACTAATTATTCAGTATC
TGAATCTAAAGATAAAGAGGCCAGTCGATTACAAAGTTGGGATGAATATCTTGGAGGTGA
TAGTTCTTCATCCGATGAAGAGACGAATACTCAAGCTAGTATTAGTGATAATAACAATAA
TAATGACTGTGATAATAATACTGAATCCAGTGGAGTAGATACTACTTCACGAAAATCAGA
ATTAGCATTTGATGTACCGTCAGATTATTGGGAAAGATTAAGTGATGAGAGTCAGTCCAG
CGGTGTGGATACAGATGATGAGAAATGGTGGGAGTGGAGCTGAGACATCATAGATTATCT
TTCACACTATAGNGNCTCTTTGCATANTTCATTGNACAAATAGNCCTCTGNNTAATNTNT
NTNA

consensusID : consensus_8736#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 674
fasta sequence

                              [GATAGACGAGAGCAAANATACACATGTGTATGTCAGTGGCCTACCNCCGACAATAACCGATGAGGAATTCTCAGCACTAATGTCGAAATGTGGTGTTATCATGAATGAACCGTTTACTAATATCCCTCGTATAAAATTGTACAAGGACCAAGCTGGCATTCCTAAAGGTGATGGGCGTTGCTGTTATGTCAGAGTTGAATCAGTGGAGCTTGCATTGA-AAATTCTCGATGGTATGTTATATAC-AC-CTGGTTATACTATTCATGTGGAACGTGCTAAATTTCAACCTAAAGGAGAATTCGATCCTAAGAAACGTCGACGTTTAACAGTTAAAGAGAAGAAAAAATTGAAAGAACAACAAGAAAATTTATTTCGATGGAGTATTGATACAAGTAAATTTATTCGAGGCAAGAAAGAACGAGTTGTTATTCTTAAAAATGCATTTATAGAGTCAGATTTTCAGCGTGATGTAACTTTAATTCCAATTGTAAGAGAACGATTACGTGTACAATGTGCCAAATGTGGTATTATCAAGAAGATTGTGGTTCATGATGCTCATCCAGAAGGCGTTGTCAGTGTAACATTTTCTACACCAGAAGAAGCAGATACGGGAATCAAATTTCTATCTAAGGCATTATTTGTTGATTATCCTGGTTCTGGAGGACCTAGACAATTAG]

[-] EMBL CD199805             [GATAGACGAGAGCAAANATACACATGTGTATGTCAGTGGCCTACCNCCGACAATAACCGATGAGGAATTCTCAGCACTAATGTCGAAATGTGGTGTTATCATGAATGAACCGTTTACTAATATCCCTCGTATAAAATTGTACAAGGACCAAGCTGGCATTCCTAAAGGTGATGGGCGTTGCTGTTATGTCAGAGTTGAATCAGTGGAGCTTGCATTGA AAATTCTCGATGGTATGTTATATAC AC CTGGTTATACTATTCATGTGGAACGTGCTAAATTTCAACCTAAAGGAGAATTCGATCCTAAGAAACGTCGACGTTTAACAGTTAAAGAGAAGAAAAAATTGAAAGAACAACAAGAAAATTTATTTCGATGGAGTATTGATACAAGTAAATTTATTCGAGGCAAGAAAGAACGAGTTGTTATTCTTAAAAATGCATTTATAGAGTCAGATTTTCAGCGTGATGTAACTTTAATTCCAATTGTAAGAGAACGATTACGTGTACAATGTGCCAAATGTGGTATTATCAAGAAGATTGTGGTTCATG                                                                                                                              ]
[-] EMBL CD199790             [GATAGACGAGAGCAAAAATACACATGTGTATGTCAGTGGCCTACCCCCGACAATAACCGATGAGGAATTCTCAGCACTAATGTCGAAATGTGGTGTTATCATGAATGAACCGTTTACTAATATCCCTCGTATAAAATTGTACAAAGACCAAGCTGGCATTCCTAAAGGTGATGGGCGTTGCTGTTATGTCAGAGTTGAATCAGTGGAGCTTGCATTGAGAAATTCTCGATGGTATGTTATATACAACACGGTTTATA T TTCAT TGGAACGTGCTAAATTTCAACCTAAAGGAGAATTTGATCCTAAGAAACGTC                                                                                                                                                                                                                                                                                                                                                                        ]
[-] EMBL CD125731             [                                                                                                                                                                                                                                                                                                                                                   GAAAAAATTGAAAGAACANC AGANAATTATTTTCGATGGAGTATTGATACAAGTAAATTTATTCGAGGCAAGAAAGAACGAGTTGTTATTCTTAAAAATGCATTTATAGAGTCAGATTTTCAGCGTGATGTAACTTTAATTCCAATTGTAAGAGAACGATTACGTGTACAATGTGCCAAATGTGGTATTATCAAGAAGATTGTGGTTCATGATGCTCATCCAGAAGGCGTTGTCAGTGTAACATTTTCTACACCAGAAGAAGCAGATACGGGAATCAAATTTCTATCTAAGGCATTATTTGTTGATTATCCTGGTTCTGGAGGACCTAGACAATTAG]




>consensus_8736#1
GATAGACGAGAGCAAANATACACATGTGTATGTCAGTGGCCTACCNCCGACAATAACCGA
TGAGGAATTCTCAGCACTAATGTCGAAATGTGGTGTTATCATGAATGAACCGTTTACTAA
TATCCCTCGTATAAAATTGTACAAGGACCAAGCTGGCATTCCTAAAGGTGATGGGCGTTG
CTGTTATGTCAGAGTTGAATCAGTGGAGCTTGCATTGAAAATTCTCGATGGTATGTTATA
TACACCTGGTTATACTATTCATGTGGAACGTGCTAAATTTCAACCTAAAGGAGAATTCGA
TCCTAAGAAACGTCGACGTTTAACAGTTAAAGAGAAGAAAAAATTGAAAGAACAACAAGA
AAATTTATTTCGATGGAGTATTGATACAAGTAAATTTATTCGAGGCAAGAAAGAACGAGT
TGTTATTCTTAAAAATGCATTTATAGAGTCAGATTTTCAGCGTGATGTAACTTTAATTCC
AATTGTAAGAGAACGATTACGTGTACAATGTGCCAAATGTGGTATTATCAAGAAGATTGT
GGTTCATGATGCTCATCCAGAAGGCGTTGTCAGTGTAACATTTTCTACACCAGAAGAAGC
AGATACGGGAATCAAATTTCTATCTAAGGCATTATTTGTTGATTATCCTGGTTCTGGAGG
ACCTAGACAATTAG

consensusID : consensus_8736#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 275
fasta sequence

                              [TGTACAATGTGCCTCATGTGGTATCATCAAGAAGATTGTGGTTCATGANGCTCATCCAGAAGGCGTTGTCNGTGTAACATTTTCTCCNCCAGAAGAACNGATNCNGGAATCNAATTTCTATCTNNGGCATTATTTGTTGATTNNCCTGGTTCTGGAGGACCTAGACAATTAGAAGCAGAACGTTGGGATGGTAANNCTANTTATTCNTTNTCTNAATCNCAANATAAAAAGGCCNNTCCATTCCAAATTTGGGATCAATATCTTGGAGGTGATNG]

[+] EMBL AA629479             [TGTACAATGTGCCTCATGTGGTATCATCAAGAAGATTGTGGTTCATGANGCTCATCCAGAAGGCGTTGTCNGTGTAACATTTTCTCCNCCAGAAGAACNGATNCNGGAATCNAATTTCTATCTNNGGCATTATTTGTTGATTNNCCTGGTTCTGGAGGACCTAGACAATTAGAAGCAGAACGTTGGGATGGTAANNCTANTTATTCNTTNTCTNAATCNCAANATAAAAAGGCCNNTCCATTCCAAATTTGGGATCAATATCTTGGAGGTGATNG]




>consensus_8736#2
TGTACAATGTGCCTCATGTGGTATCATCAAGAAGATTGTGGTTCATGANGCTCATCCAGA
AGGCGTTGTCNGTGTAACATTTTCTCCNCCAGAAGAACNGATNCNGGAATCNAATTTCTA
TCTNNGGCATTATTTGTTGATTNNCCTGGTTCTGGAGGACCTAGACAATTAGAAGCAGAA
CGTTGGGATGGTAANNCTANTTATTCNTTNTCTNAATCNCAANATAAAAAGGCCNNTCCA
TTCCAAATTTGGGATCAATATCTTGGAGGTGATNG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_8736#0      AACTAAGCTGATTAGTTTAGTCGGGAGTAATCTTTTTTGTGGAGATTGGTCCCATTTGTA 60
consensus_8736#2      ------------------------------------------------------------
consensus_8736#1      ----------------------------------------GATAGACGAGAGCAAANATA 20
                                                                                  

consensus_8736#0      CATTGTATTTGTTTGTTTGTTTAATATTCCTATTCTTAGATGATGACAGTATCCCATCAA 120
consensus_8736#2      ------------------------------------------------------------
consensus_8736#1      CAC---ATGTGTATGTCAGTGGCCTACCNCCGACAATAACCGATGAGGAATTCTCAGCAC 77
                                                                                  

consensus_8736#0      CGTAGAATGGTCACTGGTGATCATTTATTCTAAATTA-TTGATTATCTGTACTCTTGGTA 179
consensus_8736#2      ------------------------------------------------------------
consensus_8736#1      T----AATGTCGAAATGTGGTG--TTATCATGAATGAACCGTTTACTAATATCCCTCGTA 131
                                                                                  

consensus_8736#0      -GATTTTATGTATGATACAATTTTTGTCCACTGAATGAATTTTTTTCACTTTTTTCCTCT 238
consensus_8736#2      ----------------------------TGTACAATGTGCCTCATGTGGTATCATCAAGA 32
consensus_8736#1      TAAAATTGTACAAGGACCAAGCTGGCATTCCTAAAGG--TGATGGGCGTTGCTGTTATGT 189
                                                       ** *            *    *     

consensus_8736#0      CTTGTTCCAAACAATTAGGCTCATCCAGAAGGCGTTGTCAGTGTAACATTTTCTACACCA 298
consensus_8736#2      AG-ATTGTGGTTCATGANGCTCATCCAGAAGGCGTTGTCNGTGTAACATTTTCTCCNCCA 91
consensus_8736#1      CAGAGTTGAATCAGTGGAGCTTGCATTGAAAA--TTCTCGATGGTATGTTATATACACCT 247
                           *        *   ***      ***    ** **  **  *  ** * * * ** 

consensus_8736#0      GAAGAAGCAG---ATACAGGA---ATCAAATTTCTATCTAAGGCATTATTTGTTGATTAT 352
consensus_8736#2      GAAGAA-CNG---ATNCNGGA---ATCNAATTTCTATCTNNGGCATTATTTGTTGATTNN 144
consensus_8736#1      GGTTATACTATTCATGTGGAACGTGCTAAATTTCAACCTAAAGGAGAATTCGATCCTAAG 307
                      *   *  *     **   * *       ****** * **   * *  *** * *  *   

consensus_8736#0      CCTGGTTCTGGAGGACCTAGACAATTAGAAGCAGAACGTTGGGATGGTAAAACTAATTAT 412
consensus_8736#2      CCTGGTTCTGGAGGACCTAGACAATTAGAAGCAGAACGTTGGGATGGTAANNCTANTTAT 204
consensus_8736#1      AAACGTCGACGTTTAAC-AGTTAAAGAGAAG-AAAAAATTGAAAGAACAACAAGAAA-AT 364
                          **    *   * * **  **  ***** * **  ***  *    **    *   **

consensus_8736#0      TCAGTATCTGAATCTAAAGATAA-AGAGGCCAGTCGATTACAAAGTTGGGATGAATATCT 471
consensus_8736#2      TCNTTNTCTNAATCNCAANATAA-AAAGGCCNNTCCATTCCAAATTTGGGATCAATATCT 263
consensus_8736#1      T---TATTTCGATGGAGTATTGATACAAGTAAATTTATT-CGAGGCAAGAAAGAACGAGT 420
                      *   * * *  **       * * * * *    *  *** * *     * *  **    *

consensus_8736#0      TGGAGGTGATAGTTCTTCATCCGATGAAGAGACGAATACTCAAGCTAGTATTAGTGATAA 531
consensus_8736#2      TGGAGGTGATNG------------------------------------------------ 275
consensus_8736#1      TGTTATTCTTAAAAATGCATT---TATAGAGTCAGATTTTCAGCGTGATGTAACTT-TAA 476
                      **    *  *                                                  

consensus_8736#0      TAACAATAATAATGACTGTGATAATAATACTGAATCCAGTGGAGTAGATACTACTTCACG 591
consensus_8736#2      ------------------------------------------------------------
consensus_8736#1      TTCCAATTGTAA-------GAGAACGATTACGTGTACAATGTGCCAAATGTGGTATTATC 529
                                                                                  

consensus_8736#0      AAAATCAGAAT-TAGCATTTGATGTACCGTCAGATTATTGGGAAAGATTAAGTGATGAGA 650
consensus_8736#2      ------------------------------------------------------------
consensus_8736#1      AAGA--AGATTGTGGTTCATGATGCTCATCCAGA---------------AGGCGTT---- 568
                                                                                  

consensus_8736#0      GTCAGTCCAGCGGTGTGGATACAGATGATGAGAAATGGTGGGAGTGGAGCTGAGACATCA 710
consensus_8736#2      ------------------------------------------------------------
consensus_8736#1      GTCAGTGTAACATTTTCTACACCAGAAGAAGCAGATA-CGGGAATCAAATTTCTATCTAA 627
                                                                                  

consensus_8736#0      TAGATTATCTTTCACACTATAGNGNCTCTTTGCATANTTCATTGNACAAATAGNCCTCTG 770
consensus_8736#2      ------------------------------------------------------------
consensus_8736#1      GGCATTATTTGTTG-ATTATCCTGGTTCT--GGAGGACC---TAGACAATTAG------- 674
                                                                                  

consensus_8736#0      NNTAATNTNTNTNA 784
consensus_8736#2      --------------
consensus_8736#1      --------------