cluster # 9247

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Schistosoma mansoni
cluster # 9247 cluster # 9247 Sequences # 9 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_9247#0 length = 852 sequences # 6

consensus_9247#1 length = 305 sequences # 2
consensus_9247#2 length = 281 sequences # 1

consensusID : consensus_9247#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 6
consensus length = 852
fasta sequence

                              [TTATTTCACAATGTGAAGAACAACTTGCTCTTCCGAAGTTGTAGAGAAGGACGAAGAAGAACTAGAAGAAAACAAAACTCATCCATGTTGAAAGCAGAATCATACTTTTGAGATTGAAGACAACAAGAATGTTCACTACATTTCAGTAAGTTCACTAAATGAAAATGTCCATATAAAACGATCAACATTGATTTGCTTTTTTATCTGTGATACTTTTTGTTTAATCGTTGACAAAATGAAAAAAATAACTATAAAAAATAACTCATTGTAATTCATTGAATTCATTATGTATCAATAATCACTATTATTTACCGTTAAATGACAGTTCACCATGTGCCTTTCAATGTACAGCTATTAATTTCTCTTGTTATAATTAATGTATGTTTAAAAACTGTGTCTTCGAAACTATGAATACTTATACACTTATAAAAAAAATTTAATATTTCCTGTAAGGAAATAAATTTTATCAACTATTGAAAAACCAAAACCCATCAACATATCAATATTTTGTGTATAGAAAAATAAACGGTGAACGAATCTACGTGATACTGTTTTTTCAATGTTCAATATTCAAATATTAAGTGTTTTTCTCTTTAATAATATTTATCAACTACTGTATTCAAAATTGTGTATTTATTATAATTTAACCTAC-AAACATTATGTATGTATACATCATACAAATATGGTCCCCAGTACATCAAGGCTGTGAATAATTGTACAGTTTCAATACTTTTATTTTTCATGTAACTGGTAATTTGTGTCTACACTTTTTCCTATTTGTTGCTGTGTTTAAATGTATTATTTTACATAAATATGTTAACATTATACAAATGTTTGCTGTCAATTACACGT]

[-] EMBL CD197177             [TTATTTCACAATGTGAAGAACAACTTGCTCTTCCGAAGTTGTAGAGAAGGACGAAGAAGAACTAGAAGAAAACAAAACTCATCCATGTTGAAAGCAGAATCATACTTTTGAGATTGAAGACAACAAGAATGTTCACTACATTTCAGTAAGTTCACTAAATGAAAATGTCCATATAAAACGATCAACATTGATTTGCTTTTTTATCTGTGATACTTTTTGTTTAATCGTTGACAAAATGAAAAAAATAACTATAAAAAATAACTCATTGTAATTCATTGAATTCATTATGTATCAATAATCACTATTATTTACCGTTAAATGACAGTTCACCATGTGCCTTTCAATGTACAGC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     ]
[+] EMBL AA566184             [                                                 GACGAAGAAGAACTAGAAGAAAACAAAACTCATCCATGTTGAAAGCAGAATCATACTTTTGAGATTGAAGACAACAAGAATGTTCACTACATTTCAGTAAGTTCACTAAATGAAAATGTCCATATAAAACGATCAACATTGATTTGCTTTTTTATCTGTGATACTTTTTGTTTAATCGTTGACAAAATGAAAAAAATAACTATAAAAAATAACTCATTGTAATTCATTGAATTCATTATGTATCAATAATCACTATTATTTACCGTTAAATGACAGTTCAC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                           ]
[+] EMBL BF936756             [                                                                                                        CTTTTGAGATTGAAGACAACAAGAATGTTCACTACATTTCAGTAAGTTCACTAAATGAAAATGTCCATATAAAACGATCAACATTGATTTGCTTTTTTATCTGTGATACTTTTTGTTTAATCGTTGACAAAATGAAAAAAATAACTATAAAAAATAACTCATTGTAATTCATTGAATTCATTATGTATCAATAATCACTATTATTTACCGTTAAATGACAGTTCACCATGTGCCTTTCAATGTACAGCTATTAATTTCTCTTGTTATAATTAATGTATGTTTAAAAACTGTGTCTTCGAAACTATGAATACTTATACACTTATAAAAAAAATTTAATATTTCCTGTAAGGAAATAAATTTTATCAACTATTGAAAAACCAAAACCCATCAACATATCAATATTTTGTGTATAGAAAAATAAACGGTGAACGAATCTACGTGATACTGTTTTTTCAATGTTCAATATTCAAATATTAAGTGTTTTTCTCTTTAATAATATTTATCAACTACTGTATTCAAAATTGTGTATTTATTATAATTTAACCTAC AAACATTATGTATGTATACATCATACAAATATGGTCCCCAGTACATCAAGG                                                                                                                                                     ]
[+] EMBL BF440140             [                                                                                                                                                   AAGTTCACTAAATGAAAATGTCCATATAAAACGATCAACATTGATTTGCTTTTTTATCTGTGATACTTTTTGTTTAATCGTTGACAAAATGAAAAAAATAACTATAAAAAATAACTCATTGTAATTCATTGAATTCATTATGTATCAATAATCACTATTATTTACCGTTAAATGACAGTTCACCATGTGCCTTTCAATGTACAGCTATTAATTTCTCTTGTTATAATTAATGTATGTTTAAAANCTGTGTCTTCGAAACTATGAATACTTATACACTTATAAAAAAAATTTAATATTTCCTGTAAGG AATAAATTTTATCAACTATTG AAANCC AANCCCATCAACATATCA                                                                                                                                                                                                                                                                                                                                                               ]
[+] EMBL CD144103             [                                                                                                                                                                                                                                                                                                                                                                                                                               TTATACACTTATAAAAAAAATTTAATATTTCCTGTAAGGAAATAAATTTTATCAACTATTGAAAAACCAAAACCCATCAACATATCAATA TTTGTGTATAGAAAAATAAACGGTGAACGAATCTACGTGATACTGTTTTTTCAATGTTCAATATTCAAATATT AGTGTTTTTCTCTTTAATAATATTTATCAACTACTGTATTCAAAATTGTGTATTTATTATAATTTAACCTACAAAACATTATGTATGTATACATCATACAAATA                                                                                                                                                                         ]
[-] EMBL AA999510             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 ATTATGTATGTATACATCATACAAATATGGTCCCAAGTACACCAAGGCTGTGAATAATTGTACAGTTTCAATACTTTTATTTTTCATGTAACTGGTAATTTGTGTCTACACTTTTTCCTATTTGTTGCTGTGTTTAAATGTATTATTTTACATAAATATGTTAACATTATACAAATGTTTGCTGTCAATTACACGT]




>consensus_9247#0
TTATTTCACAATGTGAAGAACAACTTGCTCTTCCGAAGTTGTAGAGAAGGACGAAGAAGA
ACTAGAAGAAAACAAAACTCATCCATGTTGAAAGCAGAATCATACTTTTGAGATTGAAGA
CAACAAGAATGTTCACTACATTTCAGTAAGTTCACTAAATGAAAATGTCCATATAAAACG
ATCAACATTGATTTGCTTTTTTATCTGTGATACTTTTTGTTTAATCGTTGACAAAATGAA
AAAAATAACTATAAAAAATAACTCATTGTAATTCATTGAATTCATTATGTATCAATAATC
ACTATTATTTACCGTTAAATGACAGTTCACCATGTGCCTTTCAATGTACAGCTATTAATT
TCTCTTGTTATAATTAATGTATGTTTAAAAACTGTGTCTTCGAAACTATGAATACTTATA
CACTTATAAAAAAAATTTAATATTTCCTGTAAGGAAATAAATTTTATCAACTATTGAAAA
ACCAAAACCCATCAACATATCAATATTTTGTGTATAGAAAAATAAACGGTGAACGAATCT
ACGTGATACTGTTTTTTCAATGTTCAATATTCAAATATTAAGTGTTTTTCTCTTTAATAA
TATTTATCAACTACTGTATTCAAAATTGTGTATTTATTATAATTTAACCTACAAACATTA
TGTATGTATACATCATACAAATATGGTCCCCAGTACATCAAGGCTGTGAATAATTGTACA
GTTTCAATACTTTTATTTTTCATGTAACTGGTAATTTGTGTCTACACTTTTTCCTATTTG
TTGCTGTGTTTAAATGTATTATTTTACATAAATATGTTAACATTATACAAATGTTTGCTG
TCAATTACACGT

consensusID : consensus_9247#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 305
fasta sequence

                              [TCCGGATTGACGGGGTTTCCAAGAATGTTCACTACATTTCAGTAAGTTCACTAAATGAAAATGTCCATATAAAACGATCAACATTGATTTGCTTTTTTATCTGTGATACTTTTTGTTTAATCGTTGACAAAATGAAAAAAATAACTATAAAAAATAACTCATTGTAATTCATTGAATTCA-TTATGTATCAATAATCACTATTATTTACCGTTAAATGACAGTTCACCATGTGCCTTTCAATGTACAGCTATTAATTTCTCTTGTTATAATTAATGTATGTTTAAAAACTGTGTCTTCGAAACACC]

[-] EMBL BG932075             [TCCGGATTGACGGGGTTTCCAAGAATGTTCACTACATTTCAGTAAGTTCACTAAATGAAAATGTCCATATAAAACGATCAACATTGATTTGCTTTTTTATCTGTGATACTTTTTGTTTAATCGTTGACAAAATGAAAAAAATAACTATAAAAAATAACTCATTGTAATTCATTGAATTCA TTATGTATCAATAATCACTATTATTTACCGTTAAATGACAGTTCACCATGTGCCTTTCAATGTACAGCTATTAATTTCTCTTGTTATAATTAATGTATGTTTAAAAACTGTGTCTTCGAAACACC]
[+] EMBL SMAA14107            [                     AGAATGTTCACTACATTTCAGTAAGTTCACTAAATGAAAATGTCCATATAAAACTATCAACATTGATTTGCTTTTTTATCTGTGATACTTTTTGTTTAATCGTTGACAAAATG CAAAAATAACTATCAAAAATAACTCATTGTAATTCATTGAATGCATTTATGTATCAATA                                                                                                                ]




>consensus_9247#1
TCCGGATTGACGGGGTTTCCAAGAATGTTCACTACATTTCAGTAAGTTCACTAAATGAAA
ATGTCCATATAAAACGATCAACATTGATTTGCTTTTTTATCTGTGATACTTTTTGTTTAA
TCGTTGACAAAATGAAAAAAATAACTATAAAAAATAACTCATTGTAATTCATTGAATTCA
TTATGTATCAATAATCACTATTATTTACCGTTAAATGACAGTTCACCATGTGCCTTTCAA
TGTACAGCTATTAATTTCTCTTGTTATAATTAATGTATGTTTAAAAACTGTGTCTTCGAA
ACACC

consensusID : consensus_9247#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 281
fasta sequence

                              [CGGCCACGAATTCGGCACGAGGGATGAAGAACAACTTGCTCTTCCGAAGTTGTAGAGAAGGACGAAGAAGAACTAGAAGAAAACAAAACTCATCCATGTTGAAAGCAGAATCATACTTTTGAGATTGAAGACAACAAGAATGTTCACTACATTTCAGTAAGTTCACTAAATGAAAATGTCCATATAAAACGATCAACATTGATTCGCTTTTTTATCTGTGATACTTTTTGTTTAATCGTTGACANAATGAAAAAATAACTATAAAAATAACTCATCGTAAT]

[+] EMBL CD077919             [CGGCCACGAATTCGGCACGAGGGATGAAGAACAACTTGCTCTTCCGAAGTTGTAGAGAAGGACGAAGAAGAACTAGAAGAAAACAAAACTCATCCATGTTGAAAGCAGAATCATACTTTTGAGATTGAAGACAACAAGAATGTTCACTACATTTCAGTAAGTTCACTAAATGAAAATGTCCATATAAAACGATCAACATTGATTCGCTTTTTTATCTGTGATACTTTTTGTTTAATCGTTGACANAATGAAAAAATAACTATAAAAATAACTCATCGTAAT]




>consensus_9247#2
CGGCCACGAATTCGGCACGAGGGATGAAGAACAACTTGCTCTTCCGAAGTTGTAGAGAAG
GACGAAGAAGAACTAGAAGAAAACAAAACTCATCCATGTTGAAAGCAGAATCATACTTTT
GAGATTGAAGACAACAAGAATGTTCACTACATTTCAGTAAGTTCACTAAATGAAAATGTC
CATATAAAACGATCAACATTGATTCGCTTTTTTATCTGTGATACTTTTTGTTTAATCGTT
GACANAATGAAAAAATAACTATAAAAATAACTCATCGTAAT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_9247#0      -----------TTATTTCACAATGTGAAGAACAACTTGCTCTTCCGAAGTTGTAGAGAAG 49
consensus_9247#1      ------------------------------------------------------------
consensus_9247#2      CGGCCACGAATTCGGCACGAGGGATGAAGAACAACTTGCTCTTCCGAAGTTGTAGAGAAG 60
                                                                                  

consensus_9247#0      GACGAAGAAGAACTAGAAGAAAACAAAACTCATCCATGTTGAAAGCAGAATCATACTTTT 109
consensus_9247#1      ----------------------------------------------------------TC 2
consensus_9247#2      GACGAAGAAGAACTAGAAGAAAACAAAACTCATCCATGTTGAAAGCAGAATCATACTTTT 120
                                                                                * 

consensus_9247#0      GAGATTGAAGACAA---CAAGAATGTTCACTACATTTCAGTAAGTTCACTAAATGAAAAT 166
consensus_9247#1      CGGATTGACGGGGTTTCCAAGAATGTTCACTACATTTCAGTAAGTTCACTAAATGAAAAT 62
consensus_9247#2      GAGATTGAAGACAA---CAAGAATGTTCACTACATTTCAGTAAGTTCACTAAATGAAAAT 177
                        ****** *       *******************************************

consensus_9247#0      GTCCATATAAAACGATCAACATTGATTTGCTTTTTTATCTGTGATACTTTTTGTTTAATC 226
consensus_9247#1      GTCCATATAAAACGATCAACATTGATTTGCTTTTTTATCTGTGATACTTTTTGTTTAATC 122
consensus_9247#2      GTCCATATAAAACGATCAACATTGATTCGCTTTTTTATCTGTGATACTTTTTGTTTAATC 237
                      *************************** ********************************

consensus_9247#0      GTTGACAAAATGAAAAAAATAACTATAAAAAATAACTCATTGTAATTCATTGAATTCATT 286
consensus_9247#1      GTTGACAAAATGAAAAAAATAACTATAAAAAATAACTCATTGTAATTCATTGAATTCATT 182
consensus_9247#2      GTTGACANAATGAAAAAA-TAACTATAAAAA-TAACTCATCGTAAT-------------- 281
                      ******* ********** ************ ******** *****              

consensus_9247#0      ATGTATCAATAATCACTATTATTTACCGTTAAATGACAGTTCACCATGTGCCTTTCAATG 346
consensus_9247#1      ATGTATCAATAATCACTATTATTTACCGTTAAATGACAGTTCACCATGTGCCTTTCAATG 242
consensus_9247#2      ------------------------------------------------------------
                                                                                  

consensus_9247#0      TACAGCTATTAATTTCTCTTGTTATAATTAATGTATGTTTAAAAACTGTGTCTTCGAAAC 406
consensus_9247#1      TACAGCTATTAATTTCTCTTGTTATAATTAATGTATGTTTAAAAACTGTGTCTTCGAAAC 302
consensus_9247#2      ------------------------------------------------------------
                                                                                  

consensus_9247#0      TATGAATACTTATACACTTATAAAAAAAATTTAATATTTCCTGTAAGGAAATAAATTTTA 466
consensus_9247#1      ACC--------------------------------------------------------- 305
consensus_9247#2      ------------------------------------------------------------
                                                                                  

consensus_9247#0      TCAACTATTGAAAAACCAAAACCCATCAACATATCAATATTTTGTGTATAGAAAAATAAA 526
consensus_9247#1      ------------------------------------------------------------
consensus_9247#2      ------------------------------------------------------------
                                                                                  

consensus_9247#0      CGGTGAACGAATCTACGTGATACTGTTTTTTCAATGTTCAATATTCAAATATTAAGTGTT 586
consensus_9247#1      ------------------------------------------------------------
consensus_9247#2      ------------------------------------------------------------
                                                                                  

consensus_9247#0      TTTCTCTTTAATAATATTTATCAACTACTGTATTCAAAATTGTGTATTTATTATAATTTA 646
consensus_9247#1      ------------------------------------------------------------
consensus_9247#2      ------------------------------------------------------------
                                                                                  

consensus_9247#0      ACCTACAAACATTATGTATGTATACATCATACAAATATGGTCCCCAGTACATCAAGGCTG 706
consensus_9247#1      ------------------------------------------------------------
consensus_9247#2      ------------------------------------------------------------
                                                                                  

consensus_9247#0      TGAATAATTGTACAGTTTCAATACTTTTATTTTTCATGTAACTGGTAATTTGTGTCTACA 766
consensus_9247#1      ------------------------------------------------------------
consensus_9247#2      ------------------------------------------------------------
                                                                                  

consensus_9247#0      CTTTTTCCTATTTGTTGCTGTGTTTAAATGTATTATTTTACATAAATATGTTAACATTAT 826
consensus_9247#1      ------------------------------------------------------------
consensus_9247#2      ------------------------------------------------------------
                                                                                  

consensus_9247#0      ACAAATGTTTGCTGTCAATTACACGT 852
consensus_9247#1      --------------------------
consensus_9247#2      --------------------------