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These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9278#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 7 consensus length = 1056 fasta sequence
[TAGGTGGTAAATGTAGAGATGAATTATTTGATCGAGCGCAAAATCCATGAATTGAACGAGATCTGAAAGATTGCACGGTGACTGGATCTCGGTAATTACTCGTCAACGACGACTTTGTATCTTTCAATTTTGATTTAGCATGAGATTGCTTTACATCTGAAAAGTCAGAGTCCTGATCATTTACCTGAGTGGACAAAGAGATCAAAGCAACGTCATTGTTAGGACTCTTCACGTTACACGGAACAAACGGTCTCGATGATCTGTCGTATACAGTCGTGTCGTGTGAATGGCAGTTGCTAGTTGAGTCGATTTTCTGATATGATAAAACAGGAGGGCTAGGCTGCAATGTGTTAATAGGTGGGACACTACTTATGGATGGTGAATGAGACTGAACAGATGATAAAATTGTGCTGGTAGGAGACAGAGAACAATCACTGTCAGTTGAATGGATTAGTTTGGTACAGTCATTTACAGCTGCACTAATGCTACCTTCTTTTCCTTGGCTCTCACGTTCTGTTTTGAATGTTGTGCGTTGAGTACCTTTCTTATTTTCACGTTTTAGAAAACTGGCTGACTTATGCATTCTAACAGGTGAAGTGACTTTGAGATGACTCTGTCCTGGAGACGGTGTAGATAGAGGGGAAACTTCACAGGAACTCCTGAGCGTATCCTTATTTGGTGATGCTTTAAAAACCTTAGATTCCATTTCGCGCTGTTGTCGACGCCGCTTGACACGTTCTACAAGAGCCTCTGTAAAACCACCATACTGGTTGCATACATCCGAGAAGTTTAAGTTTGAAATATCCTTTTTTGAAATAGTAGTCTGAACCGAAGCTTCTGATATAGCAAACGTAGTTCCAGGATCCCGATAGGTAGCCGGGTTTAGAGGTGAATAGCGGACTTCGCAAAGATCCACATTTTTTTGTTCCAAACCAGGATTTGCGTGATCTAAGACACTCCACCTCTTAAGTTCTTCAAGTTCAGTTCGTCTACGGGGACCTCCACCTCTGTGCTTTCCAGATGAAAAACGACCACGACCATTTCGTTTTGGCTTTG]
[+] EMBL CD127540 [TAGGTGGTAAATGTAGAGATGAATTATTTGATCGAGCGCAAAATCCATGAATTGAACGAGATCTGAAAGATTGCACGGTGACTGGATCTCGGTAATTACTCGTCAACGACGACTTTGTATCTTTCAATTTTGATTTAGCATGAGATTGCTTTACATCTGAAAAGTCAGAGTCCTGATCATTTACCTGAGTGGACAAAGAGATCAAAGCAACGTCATTGTTAGGACTCTTCACGTTACACGGAACAAACGGTCTCGATGATCTGTCGTATACAGTCGTGTCGTGTGAATGGCAGTTGCTAGTTGAGTCGATTTTCTGATATGATAAAACAGGAGGGCTAGGCTGCAATGTGTTAATAGGTGGGACACTACTTATGGATGGTGAATGAGACTGAACAGATGATAAAATTGTGCTGGTAGGAGACAGAGAACAATCACTGTCAGTTGAATGGATTAGTTTGGTACAGTCATTTACAGCTGCACTAATGCTACCTTCTTTTC ]
[-] EMBL CD122209 [ AACGTCATTGTTAGGACTCTTCACGTTACACGGAACAAACGGTCTCGATGATCTGTCGTATACAGTCGTGTCGTGTGAATGGCAGTTGCTAGTTGAGTCGATTTTCTGATATGATAAAACAGGAGGGCTAGGCTGCAATGTGTTAATAGGTGGGACACTACTTATGGATGGTGAATGAGACTGAACAGATGATAAAATTGTGCTGGTAGGAGACAGAGAACAATCACTGTCAGTTGAATGGATTAGTTTGGTACAGTCATTTACAGCTGCACTAATGCTACCTTCTTTTCCTTGGCTCTCACGTTCTGTTTTGAATGTTGTGCGTTGAGTACCTTTCTTATTTTCACGTTTTAGAAAACTGGCTGACTTATGCATTCTAACAG ]
[+] EMBL CD127077 [ ACAGGAGGGCTAGGCTGCAATGTGTTAATAGGTGGGACACTACTTATGGATGGTGAATGAGACTGAACAGATGATAAAATTGTGCTGGTAGGAGACAGAGAACAATCACTGTCAGTTGAATGGATTAGTTTGGTACAGTCATTTACAGCTGCACTAATGCTACCTTCTTTTCCTTGGCTCTCACctacctat ]
[+] EMBL CD116640 [ GACACTACTTATGGATGGTGAATGAGACTGAACAGATGATAAAATTGTGCTGGTAGGAGACAGAGAACAATCACTGTCAGTTGAATGGATTAGTTTGGTACAGTCATTTACAGCTGCACTAATGCTACCTTCTTTTCCTTGGCTCTCACGTTCTGTTTTGAATGTTGTGCGTTGAGTACCTTTCTTATTTTCACGTTTTAGA ]
[+] EMBL CD155856 [ AATCACTGTCAGTTGAATGGGTTAGTTTGGTACAGTCATTTACAGCTGCACTAATGCTACCTTCTTTTCCTTGGCTCTCACGTTCTGTTTTGAATGTTGTGCGTTGAGTACCTTTCTTATTTTCACGTTTTAGAAAACTGGCTGACTTATGCATTCTAACAGGTGAAGTGACTTTGAGATGACTCTGTCCTGGAGACGGTGTAGATAGAGGGGAAAC ]
[-] EMBL CD131234 [ CACGTTCTGTTTTGAATGTTGTGCGTTGAGTACCTTTCTTATTTTCACGTTTTAGAAAACTGGCTGACTTATGCATTCTAACAGGTGAAGTGACTTTGAGATGACTCTGTCCTGGAGACGGTGTAGATAGAGGGGAAACTTCACAGGAACTCCTGAGCGTATCCTTATTTGGTGATGCTTTAAAAACCTTAGATTCCATTTCGCGCTGTTGTCGACGCCGCTTGACACGTTCTACAAGAGCCTCTGTAAAACCACCATACTGGTTGCATACATCCGAGAAGTTTAAGTTTGAAATATCCTTTTTTGAAATAGTAGTCTGAACCGAAGCTTCTGATATAGCAAACGTAGTTCCAGGATCCCGATAGGTAGCCGGGTTTAGAGGTGAATAGCGGACTTCGCAAAGATCC ]
[+] EMBL CD147048 [ GGAAACTT ACAGGAACTCCTGAGCGTATCCTTATTTGGTGATGCTTTAAAAACCTTAGATTCCATTTCGCGCTGTTGTCGACGCCGCTTGACACGTTCTACAAGAGCCTCTGTAAAACCACCATACTGGTTGCATACATCCGAGAAGTTTAAGTTTGAAATATCCTTTTTTGAAATAGTAGTCTGAACCGAAGCTTCTGATATAGCAAACGTAGTTCCAGGATCCCGATAGGTAGCCGGGTTTAGAGGTGAATAGCGGACTTCGCAAAGATCCACATTTTTTTGTTCCAAACCAGGATTTGCGTGATCTAAGACACTCCACCTCTTAAGTTCTTCAAGTTCAGTTCGTCTACGGGGACCTCCACCTCTGTGCTTTCCAGATGAAAAACGACCACGACCATTTCGTTTTGGCTTTG]
consensusID : consensus_9278#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 293 fasta sequence
[TAGACAAGTTCGTAGTTAGATTTTCATCAAGTGAGTCAAATAATCTCGTAGGTGACGGTAGGAGACAGAGAACAATCACTGTCAGTTGAATGGATTAGTTTGGTACAGTCATTTACAGCTGCACGTAATGCTACCTTCTTTTCCTTGGCTCTCACGTTCTGTTTTGAATGTTGTGCGTTGAGTACCTTTCTTATTTTCACGTTTTAGAAAACTGGCTGACTTATGCATTCTAACAGGTGAAGTGACTTTGAGATGACTCTGTCCTGGAGACGGTGTAGATAGAGGGGAAACTT]
[-] EMBL CD066746 [TAGACAAGTTCGTAGTTAGATTTTCATCAAGTGAGTCAAATAATCTCGTAGGTGACGGTAGGAGACAGAGAACAATCACTGTCAGTTGAATGGATTAGTTTGGTACAGTCATTTACAGCTGCACGTAATGCTACCTTCTTTTCCTTGGCTCTCACGTTCTGTTTTGAATGTTGTGCGTTGAGTACCTTTCTTATTTTCACGTTTTAGAAAACTGGCTGACTTATGCATTCTAACAGGTGAAGTGACTTTGAGATGACTCTGTCCTGGAGACGGTGTAGATAGAGGGGAAACTT]
consensusID : consensus_9278#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 149 fasta sequence
[GACTTTTCAGATGTAAAGCAATCTCATGCTAAATCAAAATTGAAAGATACAAAGTCGTCGTTGACGAGTAATTACCGAGATCCAGTCACCGTGCAAGTATGTTTATTTAGCATTCATTTAGTATAATGAGTTACGCCCATCATTTATTT]
[+] EMBL CD090044 [GACTTTTCAGATGTAAAGCAATCTCATGCTAAATCAAAATTGAAAGATACAAAGTCGTCGTTGACGAGTAATTACCGAGATCCAGTCACCGTGCAAGTATGTTTATTTAGCATTCATTTAGTATAATGAGTTACGCCCATCATTTATTT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_9278#0 TAGGTGGTAAATGTAGAGATGAATTATTTGATCGAGCGCAAAATCCATGAATTGAACGAG 60
consensus_9278#1 ------------------------------------------------------------
consensus_9278#2 ------------------------------------------------------------
consensus_9278#0 ATCTGAAAGATTGCACGGTGACTGGATCTCGGTAATTACTCGTCAACGACGACTTTGTAT 120
consensus_9278#1 ------------------------------------------------------------
consensus_9278#2 ------------------------------------------------------------
consensus_9278#0 CTTTCAATTTTGATTTAGCATGAGATTGCTTTACATCTGAAAAGTCAGAGTCCTGATCAT 180
consensus_9278#1 ------------------------------------------------------------
consensus_9278#2 ------------------------------------------------------------
consensus_9278#0 TTACCTGAGTGGACAAAGAGATCAAAGCAACGTCATTGTTAGGACTCTTCACGTTACACG 240
consensus_9278#1 ------------------------------------------------------------
consensus_9278#2 ------------------------------------------------------------
consensus_9278#0 GAACAAACGGTCTCGATGATCTGTCGTATACAGTCGTGTCGTGTGAATGGCAGTTGCTAG 300
consensus_9278#1 ------------------------------------------------------------
consensus_9278#2 ------------------------------------------------------------
consensus_9278#0 TTGAGTCGATTTTCTGATATGATAAAACAGGAGGGCTAGGCTGCAATGTGTTAATAGGTG 360
consensus_9278#1 ------------------------------------------------------TAGACA 6
consensus_9278#2 -----------------------------------------------GACTTTTCAGATG 13
**
consensus_9278#0 GGACACTACTTATGGATGGTGAATGAGACTGAACAGATGATAAAATTG-TGCTGGTAGGA 419
consensus_9278#1 AGTTCGTAGTTA--GATT-TTCATCAAGTGAGTCAAATAATCTCGTAGGTGACGGTAGGA 63
consensus_9278#2 TAAAGCAATCTC---ATGCTAAATCAAAATTGAAAGAT-ACAAAGTCGTCGTTGACGAGT 69
* * ** * ** * * ** * * * * * *
consensus_9278#0 GACAGAGAACAATCACTGTCAGT-TGAATGGATTAGTTTGGTACAGTCATTTACAGCTGC 478
consensus_9278#1 GACAGAGAACAATCACTGTCAGT-TGAATGGATTAGTTTGGTACAGTCATTTACAGCTGC 122
consensus_9278#2 AATTACCGAGATCCAGTCACCGTGCAAGTATGTTTATTTAG--CATTCATTTAGTATAAT 127
* * * ** * * ** * * ** *** * ** *******
consensus_9278#0 AC-TAATGCTACCTTCTTTTCCTTGGCTCTCACGTTCTGTTTTGAATGTTGTGCGTTGAG 537
consensus_9278#1 ACGTAATGCTACCTTCTTTTCCTTGGCTCTCACGTTCTGTTTTGAATGTTGTGCGTTGAG 182
consensus_9278#2 GAGTTACGC--CCATCATTTATTT------------------------------------ 149
* * ** ** ** *** **
consensus_9278#0 TACCTTTCTTATTTTCACGTTTTAGAAAACTGGCTGACTTATGCATTCTAACAGGTGAAG 597
consensus_9278#1 TACCTTTCTTATTTTCACGTTTTAGAAAACTGGCTGACTTATGCATTCTAACAGGTGAAG 242
consensus_9278#2 ------------------------------------------------------------
consensus_9278#0 TGACTTTGAGATGACTCTGTCCTGGAGACGGTGTAGATAGAGGGGAAACTTCACAGGAAC 657
consensus_9278#1 TGACTTTGAGATGACTCTGTCCTGGAGACGGTGTAGATAGAGGGGAAACTT--------- 293
consensus_9278#2 ------------------------------------------------------------
consensus_9278#0 TCCTGAGCGTATCCTTATTTGGTGATGCTTTAAAAACCTTAGATTCCATTTCGCGCTGTT 717
consensus_9278#1 ------------------------------------------------------------
consensus_9278#2 ------------------------------------------------------------
consensus_9278#0 GTCGACGCCGCTTGACACGTTCTACAAGAGCCTCTGTAAAACCACCATACTGGTTGCATA 777
consensus_9278#1 ------------------------------------------------------------
consensus_9278#2 ------------------------------------------------------------
consensus_9278#0 CATCCGAGAAGTTTAAGTTTGAAATATCCTTTTTTGAAATAGTAGTCTGAACCGAAGCTT 837
consensus_9278#1 ------------------------------------------------------------
consensus_9278#2 ------------------------------------------------------------
consensus_9278#0 CTGATATAGCAAACGTAGTTCCAGGATCCCGATAGGTAGCCGGGTTTAGAGGTGAATAGC 897
consensus_9278#1 ------------------------------------------------------------
consensus_9278#2 ------------------------------------------------------------
consensus_9278#0 GGACTTCGCAAAGATCCACATTTTTTTGTTCCAAACCAGGATTTGCGTGATCTAAGACAC 957
consensus_9278#1 ------------------------------------------------------------
consensus_9278#2 ------------------------------------------------------------
consensus_9278#0 TCCACCTCTTAAGTTCTTCAAGTTCAGTTCGTCTACGGGGACCTCCACCTCTGTGCTTTC 1017
consensus_9278#1 ------------------------------------------------------------
consensus_9278#2 ------------------------------------------------------------
consensus_9278#0 CAGATGAAAAACGACCACGACCATTTCGTTTTGGCTTTG 1056
consensus_9278#1 ---------------------------------------
consensus_9278#2 ---------------------------------------
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| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||