cluster # 9312

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Schistosoma mansoni
cluster # 9312 cluster # 9312 Sequences # 9 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_9312#0 length = 804 sequences # 6

consensus_9312#1 length = 416 sequences # 3

consensusID : consensus_9312#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 6
consensus length = 804
fasta sequence

                              [CGGCACGAGGATTGGCAGTGGGTATGACCTTACTGCATCTCAGTTCTCTCGAGGTGGAAATGTTTTCCAGATAGAGTATGCCTGTAAGGCGGTAGAAAATAGCGGTACAGCCATTGCTATTCAAGGTAAAGACTGTGTAGTTTTTGCTGTGGAGAATATTGTCACATCAAAACTTTACGAGCCCGGTTGTGTTAAACGGATTTATAATATTGATGACCATATCGGGATGGTGGTGATGGGATTTCAAACTGACGCTAAGGCAATCGTTGAGGCAGCCAGAGAAGAATGCGCAAATTATCGCAATAGCTTTGGAAGCCGTATACCTCTCTACTCTCTGACGGAACGACTAGCTATGTACATGCACGCTCATACACTTTATAGTGCGGTCAGACCATTCGGTGTATCAGTTTTGCTTGGTTCCTATGAAAACGATGGTCCTCATTTATTCGTGATAGAGCCTTCTGGGCTGTCTTATGCTTATTTCGGTTGTGCCATCGGAAAAGCCAAACAAAATGCAACAACTGAAATAGAGAAACTGAAGATGAACGACCTGTCCCCAGAAGAATTGATCAAGGAAGCAGCCAAAATAATTTATACCGTCCATGATGAAATCAAGGATAAAAATTTCGAACTGGATCTTAGTTGGGTTGGTGCAAATACAAAGGGTATACATCAACCTGTTCCTCGCAAACTCTTTGATGAAGCGGAGACATTCGCCAAACAGGCTTTAGAAGAAGCTGATGATTTAGATGACGAAGTAGAATAAACTATGTACATGTATGCATTATTTTCTAAAAATGTTTT]

[+] EMBL CD078610             [CGGCACGAGGATTGGCAGTGGGTATGACCTTACTGCATCTCAGTTCTCTCGAGGTGGAAATGTTTTCCAGATAGAGTATGCCTGTAAGGCGGTAGAAAATAGCGGTACAGCCATTGCTATTCAAGGTAAAGACTGTGTAGTTTTTGCTGTGGAGAATATTGTCACATCAAAACTTTACGAGCCCGGTTGTGTTAAACGGATTTATAATATTGATGACCATATCGGGATGGTGGTGATGGGATTTCAAACTGACGCTAAGGCAATCGTTGAGGCAGCCAGAGAAGAATGCGCAAATTATCGCAATAGCTTTGGAAGCCGTATACCTCTCTACTCTCTGACGGAACGACTAGCTATGTACATGCACGCTCATACACTTTATAGTGCGGTCAGACCATTCGGTGTATCAGTTTTGCTTGGTTCCTATGAAAACGATGGTCCTCATTTATTCGTGATAGAGCCTTCTGGGCTGTCTTATGCTTATTTCGGTTGTGCCATCGGAAAAGCCAAACAAAATGCAACAACTGAAATAGAGAAACTGAAGATGAACGACCTGTCCCCAGAAGAATTGATCAAGGAAGCAGCCAAAATAATTTATACCGTCCATGATGAAATCAA                                                                                                                                                                                             ]
[+] EMBL CD200127             [                                                           ATGTTTTCCAGATAGAGTATGCCTGTAAGGCGGTAGAAAATAGCGGTACAGCCATTGCTATTCAAGGTAAAGACTGTGTAGTTTTTGCTGTGGAGAATATTGTCACATCAAAACTTTACGAGCCCGGTTGTGTTAAACGGATTTATAATATTGATGACCATATCGGGATGGTGGTGATGGGATTTCAAACTGACGCTAAGGCAATCGTTGAGGCAGCCAGAGAAGAATGCGCAAATTATCGCAATAGCTTTGGAAGCCGTATACCTCTCTACTCTCTGACGGAACGACTAGCTATGTACATGCACGCTCATACACTTTATAGTGCGGTCAGACCATTCGGTGTATCAGTTTTGCTTGGTTCCTATNGAAACGATGGTCCTCATTTATTCGTGATAGAGCCTTCTGGGCTGTCTTATGCTTATTTCGGTTGT                                                                                                                                                                                                                                                                                                                          ]
[+] EMBL CD148699             [                                                                                                                                                                                                                                       GGTGATGGGATTTCAAACTGACGCTAAGGCAATCGTTGAGGCAGCCAGAGAAGAATGCGCAAATTATCGCAATAGCTTTGGAAGCCGTATACCTCTCTACTCTCTGACGGAACGACTAGCTATGTACATGCACGCTCATACACTTTATAGTGCGGTCAGACCATTCGGTGTATCAGTTTTGCTTGGTTCCTATGAAAACGATGGTCCTCATTTATTCGTGATAGAGCCTTCTGGGCTGTCTTATGCTTATTTCGGTTGTGCCATCGGAAAAGCCAAACAAAATGCAACAACTGAAATAGAGAAACTGAAGATGAACGACCTGTCCCCAGAAGAATTGATCAAGGAAGCAGCCAAAATAATTTATACCGTCCATGATGAAATCAAGGATAAAAATTT                                                                                                                                                                                 ]
[-] EMBL CD073074             [                                                                                                                                                                                                                                                                                          AGAATGCGCAAATTATCGCAATAGCTTTGGAAGCCGTATACCTCTCTACTCTCTGACGGAACGACTAGCTATGTACATGCACGCTCATACACTTTATAGTGCGGTCAGACCATTCGGTGTATCAGTTTTGCTTGGTTCCTATGAAAACGATGGTCCTCATTTATTCGTGATAGAGCCTTCTGGGCTGTCTTATGCTTATTTCGGTTGTGCCATCGGAAAAGCCAAACAAAATGCAACAACTGAAATAGAGAAACTGAAGATGAACGACCTGTCCCCAGAAGAATTGATCAAGGAAGCAGCCAAAATAATTTATCCCGTCCATGATGAAATCAAGGATAAAAATTTCGAACTGGATCTTAGTTGGGTTGGTGCAAATACAAAGGGTATACATCAACCTGTTCCTCGCAAACTCTTTGATGAAGCGGAGACATTCGCCAAACAGGCTTTAGAAGAAGCTGATGATTTAGATGACGAAGTAGAATAAACTATGTACATGTATGCATTATTTTCTAAAAATGTTTT]
[-] EMBL CD087018             [                                                                                                                                                                                                                                                                                                                        AAGCCGTATACCTCTCTACTCTCTGACGGAACGACTAGCTATGTACATGCACGCTCATACACTTTATAGTGCGGTCAGACCATTCGGTGTATCAGTTTTGCTTGGTTCCTATGAAAACGATGGTCCTCATTTATTCGTGATAGAGCCTTCTGGGCTGTCTTATGCTTATTTCGGTTGTGCCATCGGAAAAGCCAAACAAAATGCAACAACTGAAATAGAGAAACTGAAGATGAACGACCTGTCCCCAGAAGAATTGATCAAGGAAGCAGCCAAAATAATTTATACCGTCCATGATGAAATCAAGGATAAAAATTTC                                                                                                                                                                                ]
[-] EMBL CD153713             [                                                                                                                                                                                                                                                                                                                                                                                                                          TGCTTGGTTCCTATGAAAACGATGGTCCTCATTTATTCGTGATAGAGCCTTCTGGGCTGTCTTATGCTTATTTCGGTTGTGCCATCGGAAAAGCCAAACAAAATGCAACAACTGAAATAGAGAAACTGAAGATGAACGACCTGTCCCCAGAA                                                                                                                                                                                                                                                  ]




>consensus_9312#0
CGGCACGAGGATTGGCAGTGGGTATGACCTTACTGCATCTCAGTTCTCTCGAGGTGGAAA
TGTTTTCCAGATAGAGTATGCCTGTAAGGCGGTAGAAAATAGCGGTACAGCCATTGCTAT
TCAAGGTAAAGACTGTGTAGTTTTTGCTGTGGAGAATATTGTCACATCAAAACTTTACGA
GCCCGGTTGTGTTAAACGGATTTATAATATTGATGACCATATCGGGATGGTGGTGATGGG
ATTTCAAACTGACGCTAAGGCAATCGTTGAGGCAGCCAGAGAAGAATGCGCAAATTATCG
CAATAGCTTTGGAAGCCGTATACCTCTCTACTCTCTGACGGAACGACTAGCTATGTACAT
GCACGCTCATACACTTTATAGTGCGGTCAGACCATTCGGTGTATCAGTTTTGCTTGGTTC
CTATGAAAACGATGGTCCTCATTTATTCGTGATAGAGCCTTCTGGGCTGTCTTATGCTTA
TTTCGGTTGTGCCATCGGAAAAGCCAAACAAAATGCAACAACTGAAATAGAGAAACTGAA
GATGAACGACCTGTCCCCAGAAGAATTGATCAAGGAAGCAGCCAAAATAATTTATACCGT
CCATGATGAAATCAAGGATAAAAATTTCGAACTGGATCTTAGTTGGGTTGGTGCAAATAC
AAAGGGTATACATCAACCTGTTCCTCGCAAACTCTTTGATGAAGCGGAGACATTCGCCAA
ACAGGCTTTAGAAGAAGCTGATGATTTAGATGACGAAGTAGAATAAACTATGTACATGTA
TGCATTATTTTCTAAAAATGTTTT

consensusID : consensus_9312#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 416
fasta sequence

                              [CGTTCGTCGCGGAATTGTACTGGCTTAATCATGTCTTCTATTGGCAGTGGGTATGACCTTACTGCATCTCAGTTCTCTCGAGGTGGAAATGTTTTCCAGATAGAGTATGCCTGTAAGGCGGTAGAAAATAGCGGTACAGCCATTGCTATTCAAGGTAAAGACTGTGTAGTTTTTGCTGTGGAGAATATTGTCACATCAAAACTTTACGAGCCCGGTTGTGTTAAACGGATTTATAATATTGATGACCATATCGGGATGGTGGTGATGGGATTTCAAACTGACGCTAAGGCAATCGTTGAGGCAG-CCAGAGAAGAATGCGCAAATTATCGCAATAGCTTTGGAAGCCGTATACCTCTCTACTCTCTGACGGAACG-ACTAGCTATGTACATGCACGCTCATACACTTTATAGTGCGGT]

[-] EMBL CD063780             [CGTTCGTCGCGGAATTGTACTGGCTTAATCATGTCTTCTATTGGCAGTGGGTATGACCTTACTGCATCTCAGTTCTCTCGAGGTGGAAATGTTTTCCAGATAGAGTATGCCTGTAAGGCGGTAGAAAATAGCGGTACAGCCATTGCTATTCAAGGTAAAGACTGTGTAGTTTTTGCTGTGGAGAATATTGTCACATCAAAACTTTACGAGCCCGGTTGTGTTAAACGGATTTATAATATTGATGACCATATCGGGATGGTGGTGATGGGATTTCAAACTGACGCTAAGGCAATCGTTGAGGCAGACCAGAGAAGAATGCGCAAATTATCGCAATAGCTTTGGAAGCCGTATACCTCTCTACTCTCTGACGGAACG ACTAGCTATGTACATGCACGCT                    ]
[+] EMBL AI976670             [                         TAATCATGTCTTCTATTGGCAGTGGGTATGACCTTACTGCATCTCAGTTCTCTCGAGGTGGAAATGTTTTCCAGATAGAGTATGCCTGTAAGGCGGTAGAAAATAGCGGTACAGCCATTGCTATTCAAGGTAAAGACTGTGTAGTTTTTGCTGTGGAGAATATTGTCACATCAAAACTTTACGAGCCCGGTTGTGTTAAACGGATTTATAATATTGATGACCATATCGGGATGGTGGTGATGGGATTTCAAACTGACGCTAAGGCAATCGTTGAGGCAG CCAGAGAAGAATGCGCAAATTATCGCAATAGCTTTGGAAGCCGTATACCTCTCTACTCTCTGACGGAACG ACTAGCTATGTACATGCACGCTCATACACTTTATAGTGCGGT]
[+] EMBL CD138384             [                                 TCTTCTATTGGCAGTGGGTATGACCTTACTGCATCTCAGTTCTCTCGAGGTGGAAATGTTTTCCAGATAGAGTATGCCTGTAAGGCGGTAGAAAATAGCGGCACAGCCATTGCTATTCAAGGTAAAGACTGTGTAGTTTTTGCTGTGGAGAATATTGTCACATCAAAACTTTACGAGCCCGGGTGTGTTAAACGGATTTATAATATTGATGACCATATCGGGATGGTGGTGATGCGATTTCATACTGACGCTAAGGCAATCGTTGAGGCAG CCAGAGAAGAATGCGCAAATTATCGCTATAGCTTTGGAAGCCGTATACCTCTCTACTCTCTGAC GAACGNACTAGCTATGTACATGCACGCTCATACACTT           ]




>consensus_9312#1
CGTTCGTCGCGGAATTGTACTGGCTTAATCATGTCTTCTATTGGCAGTGGGTATGACCTT
ACTGCATCTCAGTTCTCTCGAGGTGGAAATGTTTTCCAGATAGAGTATGCCTGTAAGGCG
GTAGAAAATAGCGGTACAGCCATTGCTATTCAAGGTAAAGACTGTGTAGTTTTTGCTGTG
GAGAATATTGTCACATCAAAACTTTACGAGCCCGGTTGTGTTAAACGGATTTATAATATT
GATGACCATATCGGGATGGTGGTGATGGGATTTCAAACTGACGCTAAGGCAATCGTTGAG
GCAGCCAGAGAAGAATGCGCAAATTATCGCAATAGCTTTGGAAGCCGTATACCTCTCTAC
TCTCTGACGGAACGACTAGCTATGTACATGCACGCTCATACACTTTATAGTGCGGT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_9312#0      -----------------------------CGGCACGAGGATTGGCAGTGGGTATGACCTT 31
consensus_9312#1      CGTTCGTCGCGGAATTGTACTGGCTTAATCATGTCTTCTATTGGCAGTGGGTATGACCTT 60
                                                   *    *    *********************

consensus_9312#0      ACTGCATCTCAGTTCTCTCGAGGTGGAAATGTTTTCCAGATAGAGTATGCCTGTAAGGCG 91
consensus_9312#1      ACTGCATCTCAGTTCTCTCGAGGTGGAAATGTTTTCCAGATAGAGTATGCCTGTAAGGCG 120
                      ************************************************************

consensus_9312#0      GTAGAAAATAGCGGTACAGCCATTGCTATTCAAGGTAAAGACTGTGTAGTTTTTGCTGTG 151
consensus_9312#1      GTAGAAAATAGCGGTACAGCCATTGCTATTCAAGGTAAAGACTGTGTAGTTTTTGCTGTG 180
                      ************************************************************

consensus_9312#0      GAGAATATTGTCACATCAAAACTTTACGAGCCCGGTTGTGTTAAACGGATTTATAATATT 211
consensus_9312#1      GAGAATATTGTCACATCAAAACTTTACGAGCCCGGTTGTGTTAAACGGATTTATAATATT 240
                      ************************************************************

consensus_9312#0      GATGACCATATCGGGATGGTGGTGATGGGATTTCAAACTGACGCTAAGGCAATCGTTGAG 271
consensus_9312#1      GATGACCATATCGGGATGGTGGTGATGGGATTTCAAACTGACGCTAAGGCAATCGTTGAG 300
                      ************************************************************

consensus_9312#0      GCAGCCAGAGAAGAATGCGCAAATTATCGCAATAGCTTTGGAAGCCGTATACCTCTCTAC 331
consensus_9312#1      GCAGCCAGAGAAGAATGCGCAAATTATCGCAATAGCTTTGGAAGCCGTATACCTCTCTAC 360
                      ************************************************************

consensus_9312#0      TCTCTGACGGAACGACTAGCTATGTACATGCACGCTCATACACTTTATAGTGCGGTCAGA 391
consensus_9312#1      TCTCTGACGGAACGACTAGCTATGTACATGCACGCTCATACACTTTATAGTGCGGT---- 416
                      ********************************************************    

consensus_9312#0      CCATTCGGTGTATCAGTTTTGCTTGGTTCCTATGAAAACGATGGTCCTCATTTATTCGTG 451
consensus_9312#1      ------------------------------------------------------------
                                                                                  

consensus_9312#0      ATAGAGCCTTCTGGGCTGTCTTATGCTTATTTCGGTTGTGCCATCGGAAAAGCCAAACAA 511
consensus_9312#1      ------------------------------------------------------------
                                                                                  

consensus_9312#0      AATGCAACAACTGAAATAGAGAAACTGAAGATGAACGACCTGTCCCCAGAAGAATTGATC 571
consensus_9312#1      ------------------------------------------------------------
                                                                                  

consensus_9312#0      AAGGAAGCAGCCAAAATAATTTATACCGTCCATGATGAAATCAAGGATAAAAATTTCGAA 631
consensus_9312#1      ------------------------------------------------------------
                                                                                  

consensus_9312#0      CTGGATCTTAGTTGGGTTGGTGCAAATACAAAGGGTATACATCAACCTGTTCCTCGCAAA 691
consensus_9312#1      ------------------------------------------------------------
                                                                                  

consensus_9312#0      CTCTTTGATGAAGCGGAGACATTCGCCAAACAGGCTTTAGAAGAAGCTGATGATTTAGAT 751
consensus_9312#1      ------------------------------------------------------------
                                                                                  

consensus_9312#0      GACGAAGTAGAATAAACTATGTACATGTATGCATTATTTTCTAAAAATGTTTT 804
consensus_9312#1      -----------------------------------------------------