cluster # 9595

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Schistosoma mansoni
cluster # 9595 cluster # 9595 Sequences # 10 consensus # 4

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_9595#0 length = 925 sequences # 6
consensus_9595#1 length = 384 sequences # 2

consensus_9595#2 length = 269 sequences # 1
consensus_9595#3 length = 252 sequences # 1

consensusID : consensus_9595#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 6
consensus length = 925
fasta sequence

                              [ACGTAAAAGCCTACTTGCAACACCTATTTCAGAACTTGGTCCAGAGCATGCGAATGCTGTCGCTGCAGCTGTATCATGTTTTACTAACAGTTTGTCGTCACAAGTTGGTATCGGTTCATCTGTTACTAGTGATTCTCAATCTGTAGTGAACGGTTCCAGTGTAGACACTTCATCATCTAATACCGGGTGAAGCTATTTGCATAACACTAGTTTTTCTGGCTTATCTAGTTCACTGTCGATCAGTGATCGGAATGCACTCTCTCCTACATTCCTACACTTGCTGTTTATTGGAAATTCATCTTAAAGTTATTTCAAAAAGGGAAGGACAATAAAGAATTGACCGTTTCATATTTTTACTTTGGGCTTTCGGTTTTTTGCCTTTTCCACTGTTTATGTATCATCTGCCTGTAAACGGTTTTAGTCCAATTATATCTCAGTCGATGTGTGTATGCTTTGTTTCATAAGAACTGTAATTCAGAATCATCTTCCTAGTTAATATTTATTATTATTATTATTATTATTATTGTCATTAGCGATTGAATTTGATCATATATACAATAGTGCCTTACAGTATAAAACAAACTGAAAATCTGCAGTTCGGATTCTGAACTATATATATATATATATATTCCTCGATTATGGGTTGCATATCGCAAAGCAAGAATCTTGTTTATCAAACTTTTCTATTGGATGACTTATCATCTATTGTTTTGATATCATGACTAAAGATTGGATTTTATTTAATATTTTGTATAACTAATAATCCAATGTTTAACGTTATACAACACTTTTTATGATCAAATAAATCACGATTCTTGTTAGTGTTACTATCATACTACCATTAAGTTTGCTACTTGACTTTGTAAAACANATCTGATCTATTTTTAAATAACCTCTATTAGTGTTTTTATTGTCTGTTTAGTGA]

[-] EMBL CD111424             [ACGTAAAAGCCTACTTGCAACACCTATTTCAGAACTTGGTCCAGAGCATGCGAATGCTGTCGCTGCAGCTGTATCATGTTTTACTAACAGTTTGTCGTCACAAGTTGGTATCGGTTCATCTGTTACTAGTGATTCTCAATCTGTAGTGAACGGTTCCAGTGTAGACACTTCATCATCTAATACCGGGTGAAGCTATTTGCATAACACTAGTTTTTCTGGCTTATCTAGTTCACTGTCGATCAGTGATCGGAATGCACTCTCTCCTACATTCCTACACTTGCTGTTTATTGGAGATTCATCTTAAAGTTATTTCAAAAAGGGAAGGACAATAAAGAATTGACCGTTTCATATTTTTACTTTGGGCTTTCGGTTTTTTGCCTTTTCCACTGTTTATGTATCATCTGCCTGTAAACGGTTTTAGTCCAATTATATCTCAGTCGATGTGTGTATGCTTTGTTTCATAAGAACTGTAATTCAG                                                                                                                                                                                                                                                                                                                                                                                                                                                               ]
[+] EMBL CD111444             [                                                                                                                             CTAGTGATTCTCAATCTGTAGTGAACGGTTCCAGTGTAGACACTTCATCATCTAATACCGGGTGAAGCTATTTGCATAACACTAGTTTTTCTGGCTTATCTAGTTCACTGTCGATCAGTGATCGGAATGCACTCTCTCCTACATTCCTACACTTGCTGTTTATTGGAAATTCATCTTAAAGTTATTTCAAAAAGGGAAGGACAATAAAGAATTGACCGTTTCATATTTTTACTTTGGGCTTTCGGTTTTTTGCCTTTTCCACTGTTTATGTATCATCTGCCTGTAAACGGTTTTAGTCCAATTATATCTCAGTCGATGTGTGTATGCTTTGTTTCATAAGAACTGTAATTCA                                                                                                                                                                                                                                                                                                                                                                                                                                                                ]
[+] EMBL CD191256             [                                                                                                                                          ATCTGTAGTGAACGGTTCCAGTGTAGACACTTCATCATCTAATACCGGGTGAAGCTATTTGCATAACACTAGTTTTTCTGGCTTATCTAGTTCACTGTCTATCAGTGATCGGAATGCACTCTCTCCTACATTCCTACACTTGCTGTTTATTGGAAATTCATCTTAAAGTTATTTCAAAAAGGGAAGGACAATAAAGAATTGACCGTTTCATATTTTTACTTTGGGCTTTCGGTTTTTTGCCTTTTCCACTGTTTATGTATCATCTGCCTGTAAACGGTTTTAGTCCAATTATATCTCAGTCGATGTGTGTATGCTTTGTTTCATAAGAACTGTAATTCAG                                                                                                                                                                                                                                                                                                                                                                                                                                                               ]
[+] EMBL CD191288             [                                                                                                                                          ATCTGTAGTGAACGGTTCCAGTGTAGACACTTCATCATCTAATACCGGGTGAAGCTATTTGCATAACACTAGTTTTTCTGGCTTATCTAGTTCACTGTCGATCAGTGATCGGAATGCACTCTCTCCTACATTCCTACACTTGCTGTTTATTGGAAATTCATCTTAAAGTTATGGCAAAAAGGGAAGGACAATAAAGAATTGACCGTTTCATATTTTTACTTTGGGCTTTCGGTTTTTTGCCTTTTCCACTGTTTATGTATCATCTGCCTGTAAACGGTTTTAGTCCAATTATATCTCAGTCGATGTGTGTATGCTTTGTTTCATAAGAACTGTAATTCAG                                                                                                                                                                                                                                                                                                                                                                                                                                                               ]
[+] EMBL CD191294             [                                                                                                                                          ATCTGTAGTGAACGGTTCCAGTGTAGACACTTCATCATCTAATACCGGGTGAAGCTATTTGCATAACACTAGTTTTTCTGGCTTATCTAGTTCACTGTCTATCAGTGATCGGAATGCACTCTCTCCTACATTCCTACACTTGCTGTTTATTGGAAATTCATCTTAAAGTTATTTCAAAAAGGGAAGGACAATAAAGAATTGACCGTTTCATATTTTTACTTTGGGCTTTCGGTTTTTTGCCTTTTCCACTGTTTATGTATCATCTGCCTGTAAACGGTTTTAGTCCAATTATATCTCAGTCGATGTGTGTATGCTTTGTTTCATAAGAACTGTAATTCAG                                                                                                                                                                                                                                                                                                                                                                                                                                                               ]
[+] EMBL CD078876             [                                                                                                                                                                                                                                                                                                                                                 TGACCGTTTCATATTTTTACTTTGGGCTTTCGGTTTTTTGCCTTTTCCACTGTTTATGTATCATCTGCCTGTAAACGGTTTTAGTCCAATTATATCTCAGTCGATGTGTGTATGCTTTGTTTCATAAGAACTGTAATTCAGAATCATCTTCCTAGTTAATATTTATTATTATTATTATTATTATTATTGTCATTAGCGATTGAATTTGATCATATATACAATAGTGCCTTACAGTATAAAACAAACTGAAAATCTGCAGTTCGGATTCTGAACTATATATATATATATATATTCCTCGATTATGGGTTGCATATCGCAAAGCAAGAATCTTGTTTATCAAACTTTTCTATTGGATGACTTATCATCTATTGTTTTGATATCATGACTAAAGATTGGATTTTATTTAATATTTTGTATAACTAATAATCCAATGTTTAACGTTATACAACACTTTTTATGATCAAATAAATCACGATTCTTGTTAGTGTTACTATCATACTACCATTAAGTTTGCTACTTGACTTTGTAAAACANATCTGATCTATTTTTAAATAACCTCTATTAGTGTTTTTATTGTCTGTTTAGTGA]




>consensus_9595#0
ACGTAAAAGCCTACTTGCAACACCTATTTCAGAACTTGGTCCAGAGCATGCGAATGCTGT
CGCTGCAGCTGTATCATGTTTTACTAACAGTTTGTCGTCACAAGTTGGTATCGGTTCATC
TGTTACTAGTGATTCTCAATCTGTAGTGAACGGTTCCAGTGTAGACACTTCATCATCTAA
TACCGGGTGAAGCTATTTGCATAACACTAGTTTTTCTGGCTTATCTAGTTCACTGTCGAT
CAGTGATCGGAATGCACTCTCTCCTACATTCCTACACTTGCTGTTTATTGGAAATTCATC
TTAAAGTTATTTCAAAAAGGGAAGGACAATAAAGAATTGACCGTTTCATATTTTTACTTT
GGGCTTTCGGTTTTTTGCCTTTTCCACTGTTTATGTATCATCTGCCTGTAAACGGTTTTA
GTCCAATTATATCTCAGTCGATGTGTGTATGCTTTGTTTCATAAGAACTGTAATTCAGAA
TCATCTTCCTAGTTAATATTTATTATTATTATTATTATTATTATTGTCATTAGCGATTGA
ATTTGATCATATATACAATAGTGCCTTACAGTATAAAACAAACTGAAAATCTGCAGTTCG
GATTCTGAACTATATATATATATATATATTCCTCGATTATGGGTTGCATATCGCAAAGCA
AGAATCTTGTTTATCAAACTTTTCTATTGGATGACTTATCATCTATTGTTTTGATATCAT
GACTAAAGATTGGATTTTATTTAATATTTTGTATAACTAATAATCCAATGTTTAACGTTA
TACAACACTTTTTATGATCAAATAAATCACGATTCTTGTTAGTGTTACTATCATACTACC
ATTAAGTTTGCTACTTGACTTTGTAAAACANATCTGATCTATTTTTAAATAACCTCTATT
AGTGTTTTTATTGTCTGTTTAGTGA

consensusID : consensus_9595#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 384
fasta sequence

                              [TGTACACGTTCTCCATCCATCCTTACAACAATCACATCCTGTTCATTTCACTTCCTTGACATCTCTACCACAATCATATACTACGTCTACTGGACGACACTCATATCCAGCCTGTGTATCAACTCAACATCATACACTTTCATCAGCTGCAGTTCCGAATTCTTCGTTATCTGTTACATCTACATTGTCACTTTGTAGCAGTGTGAATGTAACTACCAATTCCCACCCACCAATAGATTGTCAAAGTGATAGTTTCCTCCCCCATAATATAAAATCTAATAACCTCAGAAACATCGATGTACTTAAGTCTGTCACGTGCAGTTCAGAACCCAGTCCCGCTGACAGTGTTTTAACTAATGCTTGCATCAATACTAACATGGGTTA]

[+] EMBL CD089669             [TGTACACGTTCTCCATCCATCCTTACAACAATCACATCCTGTTCATTTCACTTCCTTGACATCTCTACCACAATCATATACTACGTCTACTGGACGACACTCATATCCAGCCTGTGTATCAACTCAACATCATACACTTTCATCAGCTGCAGTTCCGAATTCTTCGTTATCTGTTACATCTACATTGTCACTTTGTAGCAGTGTGAATGTAACTACCAATTCCCACCCACCAATAGATTGTCAAAGTGATAGTTTCCTCCCCCATAATATAAAATCTAATAACCTCAGAAACATCGATGTACTTAAGTCTGTCACGTGCAGTTCAGAACCCAGTCCCGCTGACAGTGTTTTAACTAATGCTTGCATCAATACTAACATGGGTTA]
[+] EMBL CD062930             [                                     CCTGTTCATTTCACTTCCTTGACATCTCTACCACAATCATATACTACGTCTACTGGACGACACTCATATCCAGCCTGTGTATCAACTCAACATCATACACTTTCATCAGCTGCAGTTCCGAATTCTTCGTTATCTGTTACATCTACATTGTCACTTTGTAGCAGTGTGAATGTAACTACCAATTCTCACCCACCAATAGATTGTCAAAGTGATAGTTTCCTCCCCCATAATATGGAATCTAATAACCTCAGAAACATCGATGTACTTAAGTCTGTCACGTGCAGTTCAGAACCCAGTCCCGCTGACAGT                                      ]




>consensus_9595#1
TGTACACGTTCTCCATCCATCCTTACAACAATCACATCCTGTTCATTTCACTTCCTTGAC
ATCTCTACCACAATCATATACTACGTCTACTGGACGACACTCATATCCAGCCTGTGTATC
AACTCAACATCATACACTTTCATCAGCTGCAGTTCCGAATTCTTCGTTATCTGTTACATC
TACATTGTCACTTTGTAGCAGTGTGAATGTAACTACCAATTCCCACCCACCAATAGATTG
TCAAAGTGATAGTTTCCTCCCCCATAATATAAAATCTAATAACCTCAGAAACATCGATGT
ACTTAAGTCTGTCACGTGCAGTTCAGAACCCAGTCCCGCTGACAGTGTTTTAACTAATGC
TTGCATCAATACTAACATGGGTTA

consensusID : consensus_9595#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 269
fasta sequence

                              [GTGTTATGCAAATAGCTTCACCCGGTATTAGATGATGAAGTGTCTACACTGGAACCGTTCACTACAGATTGAGAATTGGTAGTTACATTCACACTGCTACAAAGTGACAATGTAGATGTAACAGATAACGAAGAATTCGGAACTGCAGCTGATGAAAGTGTATGATGTTGAGTTGATACACAGGCTGGATATGAGTGTCGTCCAGTAGACGTAGTATATGATTGTGGTAGAGATGTCAAGGAAGTGAAATGAACAGGATGTGATTGTTG]

[+] EMBL CD147865             [GTGTTATGCAAATAGCTTCACCCGGTATTAGATGATGAAGTGTCTACACTGGAACCGTTCACTACAGATTGAGAATTGGTAGTTACATTCACACTGCTACAAAGTGACAATGTAGATGTAACAGATAACGAAGAATTCGGAACTGCAGCTGATGAAAGTGTATGATGTTGAGTTGATACACAGGCTGGATATGAGTGTCGTCCAGTAGACGTAGTATATGATTGTGGTAGAGATGTCAAGGAAGTGAAATGAACAGGATGTGATTGTTG]




>consensus_9595#2
GTGTTATGCAAATAGCTTCACCCGGTATTAGATGATGAAGTGTCTACACTGGAACCGTTC
ACTACAGATTGAGAATTGGTAGTTACATTCACACTGCTACAAAGTGACAATGTAGATGTA
ACAGATAACGAAGAATTCGGAACTGCAGCTGATGAAAGTGTATGATGTTGAGTTGATACA
CAGGCTGGATATGAGTGTCGTCCAGTAGACGTAGTATATGATTGTGGTAGAGATGTCAAG
GAAGTGAAATGAACAGGATGTGATTGTTG

consensusID : consensus_9595#3
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 252
fasta sequence

                              [GCCAAAGTTGCTGGCCTTCCTGGACCTCATTCTTGGAATCCAAACGTTGTAGCTAATTTTATTTCTACATTGCCAGGATGTAAACAGTTCGCTTGTAAATTCATTGAGAATGAAATAGATGGAGCTGCTTTATTATGCCTTGAACAACACGATCTGATGCATGTATTAGGTATGAAACTGGGTCCTGCTGTAAAAGTATCTACTGCTATTCAAGCTTTACGTAAAAGCCTACTTGCAACACCTATTTCAGAA]

[+] EMBL CD170189             [GCCAAAGTTGCTGGCCTTCCTGGACCTCATTCTTGGAATCCAAACGTTGTAGCTAATTTTATTTCTACATTGCCAGGATGTAAACAGTTCGCTTGTAAATTCATTGAGAATGAAATAGATGGAGCTGCTTTATTATGCCTTGAACAACACGATCTGATGCATGTATTAGGTATGAAACTGGGTCCTGCTGTAAAAGTATCTACTGCTATTCAAGCTTTACGTAAAAGCCTACTTGCAACACCTATTTCAGAA]




>consensus_9595#3
GCCAAAGTTGCTGGCCTTCCTGGACCTCATTCTTGGAATCCAAACGTTGTAGCTAATTTT
ATTTCTACATTGCCAGGATGTAAACAGTTCGCTTGTAAATTCATTGAGAATGAAATAGAT
GGAGCTGCTTTATTATGCCTTGAACAACACGATCTGATGCATGTATTAGGTATGAAACTG
GGTCCTGCTGTAAAAGTATCTACTGCTATTCAAGCTTTACGTAAAAGCCTACTTGCAACA
CCTATTTCAGAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_9595#0      ACGTAAAAGCCTACTTGCAACACCTATTTCAGAACTTGGTCCAGAGCATGCGAATGCTGT 60
consensus_9595#3      ------------------------------------------------------------
consensus_9595#1      ------------------------------------------------------------
consensus_9595#2      ------------------------------------------------------------
                                                                                  

consensus_9595#0      CGCTGCAGCTGTATCATGTTTTACTAACAGTTTGTCGTCACAAGTTGGTATCGGTTCATC 120
consensus_9595#3      ------------------------------------------------------------
consensus_9595#1      ------------------------------------------------------------
consensus_9595#2      ------------------------------------------------------------
                                                                                  

consensus_9595#0      TGTTACTAGTGATTCTCAATCTGTAGTGAACGGTTCCAGTGTAGACACTTCATCATCTAA 180
consensus_9595#3      ------------------------------------------------------------
consensus_9595#1      --------------------------------------------------TGTACACGTT 10
consensus_9595#2      -------------------------------------------------------GTGTT 5
                                                                                  

consensus_9595#0      TACCGGGTGAAGCTATTTGCATAACACTAGTTTTTCTGGCTTATCTAGTTCACTGTCGAT 240
consensus_9595#3      -------------------------GCCAAAGTTGCTGGCCTTCCTGGACCTCATTC--- 32
consensus_9595#1      CTCCATCCATCCTTACAACAATCACATCCTGTTCATTTCACTTCCTTGACATCTCTACCA 70
consensus_9595#2      ATGCAAATAGCTTCACC-CGGTATTAGATGATGAAGTGTCTACACTGGAACCGTTCACTA 64
                                                          *       ** *            

consensus_9595#0      CAGTGATCGGAATGCACTCTCTC-CTACATTCCTACACTTGCTGTTTATTGGAAATTCAT 299
consensus_9595#3      TTGGAATCCAAACGTTGTAGCTAATTTTATTTCTACATTGCCAGGATGTAAACAGTTCGC 92
consensus_9595#1      CAATCATATACTACGTCTACTGGACGACACTCATATCCAGCCTGTGTATCAACTCAACAT 130
consensus_9595#2      CAGATTGAGAATTGGTAGTTACATTCACACTGCTACAAAGTGACAATGTAGATGTAACAG 124
                                                  * *  **           * *        *  

consensus_9595#0      CTTAAAGTTATTTCAAAA-AGGGAAGGACAATAAAGAATTGACCGTTTCATATTTTTACT 358
consensus_9595#3      TTGTAAATTCATTGAGAA-TGAAATAGATGG---------AGCTGCTTTAT---TATGCC 139
consensus_9595#1      CATACACTTTCATCAGC--TGCAGTTCCGAATTCTTCGTTATCTGTTACAT----CTACA 184
consensus_9595#2      ATAACGAAGAATTCGGAACTGCAGCTGATGA---------AAGTGTATGATG---TTGAG 172
                                  *       *                       *    **     *   

consensus_9595#0      TTGG-GCTTT-CGGTTTTTTGCCTTTTCCACTGTTTATGTATCATCTGCCTGTAAACGGT 416
consensus_9595#3      TTGA-ACAACACGATCTGATGCATGTATTAGGTATGAAACTGGGTCCTGCTGTAAAAGTA 198
consensus_9595#1      TTGTCACTTTGTAGCAGTGTGAATGT---AACTACCAATTCCCACCCACCAATAGATTGT 241
consensus_9595#2      TTGATAC------ACAGGCTGGATAT---GAGTGTCGTCCAGTAGACG-TAGTATATGAT 222
                      ***   *            **  * *                          ** *    

consensus_9595#0      TTTAGTCCAATTATATCTCAGTCGATGTGTGTATGCTTTGTTTCATAAGAACTGTAATTC 476
consensus_9595#3      TCTACTGCTAT------TCAAGCTTTACGTAAAAGCCTACTTGC--AACACCTAT--TTC 248
consensus_9595#1      CAAAGTGATAGTTT-CCTCCCCCATAATATAAAATCTAATAACCTCAGAAACATCGATGT 300
consensus_9595#2      TGTGGTAGAGATGTCAAGGAAGTGAAATGAACAGGATGTGATTGTTG------------- 269
                           *                          *                           

consensus_9595#0      AGAATCATCTTCCTAGTTAATATTTATTATTATTATTATTATTATTATTGTCATTAGCGA 536
consensus_9595#3      AGAA-------------------------------------------------------- 252
consensus_9595#1      ACTTAAGTCTGTCACGTGCAGTTCAGAACCCAGTCCCGCTGACAGTGTTTTAACTAATGC 360
consensus_9595#2      ------------------------------------------------------------
                                                                                  

consensus_9595#0      TTGAATTTGATCATATATACAATAGTGCCTTACAGTATAAAACAAACTGAAAATCTGCAG 596
consensus_9595#3      ------------------------------------------------------------
consensus_9595#1      TTGCATCAATACTAACATGGGTTA------------------------------------ 384
consensus_9595#2      ------------------------------------------------------------
                                                                                  

consensus_9595#0      TTCGGATTCTGAACTATATATATATATATATATTCCTCGATTATGGGTTGCATATCGCAA 656
consensus_9595#3      ------------------------------------------------------------
consensus_9595#1      ------------------------------------------------------------
consensus_9595#2      ------------------------------------------------------------
                                                                                  

consensus_9595#0      AGCAAGAATCTTGTTTATCAAACTTTTCTATTGGATGACTTATCATCTATTGTTTTGATA 716
consensus_9595#3      ------------------------------------------------------------
consensus_9595#1      ------------------------------------------------------------
consensus_9595#2      ------------------------------------------------------------
                                                                                  

consensus_9595#0      TCATGACTAAAGATTGGATTTTATTTAATATTTTGTATAACTAATAATCCAATGTTTAAC 776
consensus_9595#3      ------------------------------------------------------------
consensus_9595#1      ------------------------------------------------------------
consensus_9595#2      ------------------------------------------------------------
                                                                                  

consensus_9595#0      GTTATACAACACTTTTTATGATCAAATAAATCACGATTCTTGTTAGTGTTACTATCATAC 836
consensus_9595#3      ------------------------------------------------------------
consensus_9595#1      ------------------------------------------------------------
consensus_9595#2      ------------------------------------------------------------
                                                                                  

consensus_9595#0      TACCATTAAGTTTGCTACTTGACTTTGTAAAACANATCTGATCTATTTTTAAATAACCTC 896
consensus_9595#3      ------------------------------------------------------------
consensus_9595#1      ------------------------------------------------------------
consensus_9595#2      ------------------------------------------------------------
                                                                                  

consensus_9595#0      TATTAGTGTTTTTATTGTCTGTTTAGTGA 925
consensus_9595#3      -----------------------------
consensus_9595#1      -----------------------------
consensus_9595#2      -----------------------------