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These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9671#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 7 consensus length = 1545 fasta sequence
[GGGCTCAGATGCATTCAAGAGACTCGTTCAAAATGTTCATGCTTTAGAGGCTACTATTCTTATGGTCATTGGGTTTCACACTCTTGAAGTCAAACAACCACATGTGCTACTCATTAAGGCCATTCGCGCAAATAAATTCCCGAAGGAAATAGCTCATACTAGCTACTATGTCTGCACCAATATACTGCATCTCACTACTTTAGTATTGCGAGATTCTGCAGAAGCAATTGCCGCTGCTAGTCTTTACATTGCTGCAAAGTGGAACGGAACAGACATTCAGTCTTCAAACGGGGAGTGGTACCATATTTTTTCCCCGATGCTGACTTTTGAGGAAGTCTCCAAAATAACAGACGAATTCACCCTTACTTTCCAAGAGTGCGATTTAAAAATCAGAGAGCAACTGCGCTGTT---TCCG-TCCCGGAAGTTACAAAGAGAACGAAGAGAGGATCTTGTCAATAATCCTCCTCGAGCTCAAGAACCTCAGAGGAGACCAGTTCCTGATTCTCAACAAAAAGCTGATTCTTGGAAAACAGAGAAAAGACCTTACAATTCGACAAATTCTAGTGCACCTCAAGTCCCATCTCAACATCCAAATCACCATGCTCGAAGCCATGCTGGTGGCTCCCAGAATACACAGATGAATCATCCATATCATGGACATAATCGGGCCCCACAATCACATGTTTATGGGAACGAACATCTCAACAGATCTCATTCTAACCGTCCTCCAGGTCCTGGGAATAATGAACCGGATCCTAAACGTCAGCGATTTGATCGCCCATTCCCAAATCAGTGTCAACGATCACCACAACCTCACTTGTCTGGTGGACATCATCCCGACGGAACAGCCCGTGCAAATCGTATGGAGAGTTCTGTCTCCCATTCTGGAGGTGGCGAACACAAAGTACATTATCAATCTGCTAATCGTATCCATGGAACAGATTACAGGATGGCACAATCCACTGGTTACAATGCTGTTCCAAATAAGCCACCTTACGGACGAGATGAACATGAAGACTCACGTCTTAACTCAGGGAATTCTCGTTCTGTAAAACCAACTGGTCATCCACAAGGAAACACACGAGTGAAGCCTGATCTAAATGACTATTTTTGAATATTTTCTTGATTAATATAGTTTTACAT-GGTGTGTGCATTTTTTG-CCACATTCCTGAA-TTTCCGCATACAGATAGCGTTGTACATATGTTAAACTGCTTTTTTTTGTTTAAAAGTATACCTACTTGCAGTTTGTTGACTCAAAACAGTCAGTTCGCCTTTCGTATTTGTCTAGTCTTTTAAGATCAACTGTAAAGTCTTTCTTCTTTTCCCATTACTGTGTTTATTAGTAGTGCATGTTTTTTTGTTGTTTTCGCGTAAGAATTTTTATATTAATTGCTTTTATACGAATAGTTTGGTACTTTTGTGTATTTCTTAATACATTTGTGTAGTTATTACTGTTCGATGTCTATTACCAATTTTCTTTGTATTGCCATTTATTTTGTAGTACATTGAATAATTTTCAGTTACTAATGGAAAAAAAAAAAAAAAA]
[+] EMBL BG930972 [GGGCTCAGATGCATTCAAGAGACTCGTTCAAAATGTTCATGCTTTAGAGGCTACTATTCTTATGGTCATTGGGTTTCACACTCTTGAAGTCAAACAACCACATGTGCTACTCATTAAGGCCATTCGCGCAAATAAATTCCCGAAGGAAATAGCTCATACTAGCTACTATGTCTGCACCAATATACTGCATCTCACTACTTTAGTATTGCGAGATTCTGCAGAAGCAATTGCCGCTGCTAGTCTTTACATTGCTGCAAAGTGGAACGGAACAGACATTCAGTCTTCAAACGGGGAGTGGTACCATATTTTTTCCCCG ]
[+] EMBL CD185888 [ cATTCTGCAGAAGCAATTGCCGCTGCTAGTCTTTACATTGCTGCAAAGTGGAACGGAACAGACATTCAGTCTTCAAACGGGGAGTGGTACCATATTTTTTCCCCGATGCTGACTTTTGAGGAAGTCTCCAAAATAACAGACGAATTCACCCTTACTTTCCAAGAGTGCGATTTAAAAATCAGAGAGCAACTGCGCTGTTCGCTCCGATCCCGGAAGTTACAAAGAGAACGAAGAGAGGATCTTGTCAATAATCCTCCTCGAGCTCAAGAACCTCAGAGGAGACCAGTTCCTGATTCTCAACAAAAAGCTGATTCTTGGAAAACAGAGAAAAGACCTTACAATTCGACAAATTCTAGTGCACCTCAAGTCCCATCTCAACATCCAAATCACCATGCTCGAAGCCAT ]
[+] EMBL CD078770 [ CAAAATAACAGACGAATTCACCCTTACTTTCCAAGAGTGCGATTTAAAAATCAGAGAGCAACTGCGCTTAT TTAG TCCCGGAAGTTACAAAGAGAACGAAGAGAGGATCTTGTCAATAATCCTCCTCGAGCTCAAGAACCTCAGAGGAGACCAGTTCCTGATTCTCAACAAAAAGCTGATTCTTGGAAAACAGAGAAAAGACCTTACAATTCGACAAATTCTAGTGCACCTCAAGTCCCATCTCAACATCCAAATCACCATGCTCGAAGCCATGCTGGTGGCTCCCAGAATACACAGATGAATCATCCATATCATGGACATAATCGGGCCCCACAATCACATGTTTATGGGAACGAACATCTCAACAGATCTCATTCTAACCGTCCTCCAGGTCCTGGGAATAATGAACCGGATCCTAAACGTCAGCGATTTGATCGCCCATTCCCAAATCAGTGTCAACGATCACCACAACCTCACTTGTCTGGTGGACATCATCCCGACGGAACAGCCCGTGCAAATCGTATGGAGAGTTCTGTCTCCCATTCTGGAGGTGGCGAACACAAAGTACATTATCAATCTGCTAATCGTATCCATGGAACAGATTACAGGATGGCACAATCCACTGGTT ]
[-] EMBL CD199214 [ CCATGCTGGTGGCTCNCAGAATACACAGATGAATCATCCATATCATGGACATAATCGGGCCCCACAATCACATGTTTATGGGAACGAACATCTCAACAGATCTCATTCTAACCGTCCTCCAGGTCCTGGGAATAATGAACCGGATCCTAAACGTCAGCGATTTGATCGCCCATTCCCAAATCAGTGTCAACGATCACCACAACCTCACTTGTCTGGTGGACATCATCCCGACGGAACAGCCCGTGCAAATCGTATGGAGAGTTCTGTCTCCCATTCTGG ]
[-] EMBL CD073230 [ GGCGAACACAAAGTACATTATCAATCTGCTAATCGTATCCATGGAACAGATTACAGGATGGCACAATCCACTGGTTACAATGCTGTTCCAAATAAGCCACCTTACGGACGAGATGAACATGAAGACTCACGTCTTAACTCAGGGAATTCTCGTTCTGTAAAACCAACTGGTCATCCACAAGGAAACACACGAGTGAAGCCTGATCTAAATGACTATTTTTGAATATTTTCTTGATTAATATAGTTTTACAT GGTGTGTGCATTTTTTG CCACATTCCTGAA TTTCCGCATACAGATAGCGTTGTACATATGTTAAACTGCTTTTTTTTGTTTAAAAGTATACCTACTTGCAGTTTGTTGACTCAAAACAGTCAGTTCGCCTTTCGTATTTGTCTAGTCTTTTAAGATCAACTGTAAAGTCTTTCTTCTTTTCCCATTACTGTGTTTATTAGTAGTGCATGTTTTTTTGTTGTTTTCGCGTAAGAATTTTTATATTAATTGCTTTTATACGAATAGTTTGGTACTTTTGTGTATTTCTTAATACATTTGT ]
[-] EMBL AI395657 [ attaAAATG CAATTTTTGAATATTTTCGTGATTAATATAGTTTTACATGGGTGTGTGCATTTTATGCCCACATTCCTGAATTTTCCGCATACAGATAGCGTTGTACATATGTTAAACTGCTTTTTTTTGTTTAAAAGTATACCTACTTGCAGTTTGTTGACTCAAAACAGTCAGTTCGCCTTTCGTATTTGTCTAGTCTTTTAAGATCAACTGTAAAGTCTTTCTTCTTTTCCCATTACTGTGTTTATTAGTAGTGCATGTTTTTTTGTTGTTTTCGCGTAAGAATTTTTATATTAATTGCTTTTATACGAATAGTTTGGTACTTTTGTGTATTTCTTAATACATTTGTGTAGTTATTACTGTTCGATGTCTATTACCAATTTTCTTTGTATTGCCATTTATTTTGTAGTACATTGAATAATTTTCAGTTACTAATGGAAAAAAAAAAAAAAAA]
[-] EMBL BF936961 [ GTTTGTTGACTCAAAACAGTCAGTTCGCCTTTGGGATTTGTCTAGTCTTTTAAGATCAACTGTAAAGTCTTTGTTCTTTTCCCATT ]
consensusID : consensus_9671#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 391 fasta sequence
[GGGACCACACGATTGAAGCCTGATCTAAGTGCTAATATTTGAATATTTTCTTGATTAATATAGTTTAGCATGGTGTGTGCATTTTCTGCCACATTCGTGAATTACGGCATACAGATAGCGATGTACATATGCTAAACTGCTTTTTTTTGTTTAAAAGTATACCTACTTGCAGTTTGTTGACTCAAAACAGTCAGTTCGCCTTTCGTATTTGTCTAGTCTGTTAAGATCAACTGTAAAGTCTTTCTTCTTTTCCCATTACTGTGTTTATTAGTAGTGCATGTCCTGGATGTTGTGATTCGCGTAAGAATTTTTATCTTAATTGCTTTTGTCCGAATAGTTTGGTACTTGTGTGTATTTCTTAATACATTTGTGTAGTTATTAAAAAAAACAA]
[-] EMBL AI395075 [GGGACCACACGATTGAAGCCTGATCTAAGTGCTAATATTTGAATATTTTCTTGATTAATATAGTTTAGCATGGTGTGTGCATTTTCTGCCACATTCGTGAATTACGGCATACAGATAGCGATGTACATATGCTAAACTGCTTTTTTTTGTTTAAAAGTATACCTACTTGCAGTTTGTTGACTCAAAACAGTCAGTTCGCCTTTCGTATTTGTCTAGTCTGTTAAGATCAACTGTAAAGTCTTTCTTCTTTTCCCATTACTGTGTTTATTAGTAGTGCATGTCCTGGATGTTGTGATTCGCGTAAGAATTTTTATCTTAATTGCTTTTGTCCGAATAGTTTGGTACTTGTGTGTATTTCTTAATACATTTGTGTAGTTATTAAAAAAAACAA]
consensusID : consensus_9671#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 337 fasta sequence
[GATCCTAAACGTCAGCGATTTGATCGCCCATTCCCAAATCAGTGTCAACGATCACCACAACCTCACTTGTCTGGTGGACATCATCCCGACGGAACAGCCCGTCCACCTTACGGACGAGATGAACATGAAGACTCACGTCTTAACTCAGGGAATTCTCGTTCTGTAAAACCAACTGGTCATCCACAAGGAAACACACGAGTGAAGCCTGATCTAAATGACTATTTTTGAATATTTTCTTGATTAATATAGTTTTACATGGTGTGTGCATTTTTTGCCACATTCCTGAATTTCCGCATACAGATAGCGTTGTACATATGTTAAACTGCTTTTTTTTTGT]
[+] EMBL CD117012 [GATCCTAAACGTCAGCGATTTGATCGCCCATTCCCAAATCAGTGTCAACGATCACCACAACCTCACTTGTCTGGTGGACATCATCCCGACGGAACAGCCCGTCCACCTTACGGACGAGATGAACATGAAGACTCACGTCTTAACTCAGGGAATTCTCGTTCTGTAAAACCAACTGGTCATCCACAAGGAAACACACGAGTGAAGCCTGATCTAAATGACTATTTTTGAATATTTTCTTGATTAATATAGTTTTACATGGTGTGTGCATTTTTTGCCACATTCCTGAATTTCCGCATACAGATAGCGTTGTACATATGTTAAACTGCTTTTTTTTTGT]
[+] EMBL SM3781 [ AGCCTGATCTAAATGACTATTTTTGAATATTTTCTTGATTAATATAGTTTTACATGGTGTGTGCA TTTTTGCCACATTCCTG ]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_9671#0 GGGCTCAGATGCATTCAAGAGACTCGTTCAAAATGTTCATGCTTTAGAGGCTACTATTCT 60
consensus_9671#2 ------------------------------------------------------------
consensus_9671#1 ------------------------------------------------------------
consensus_9671#0 TATGGTCATTGGGTTTCACACTCTTGAAGTCAAACAACCACATGTGCTACTCATTAAGGC 120
consensus_9671#2 ------------------------------------------------------------
consensus_9671#1 ------------------------------------------------------------
consensus_9671#0 CATTCGCGCAAATAAATTCCCGAAGGAAATAGCTCATACTAGCTACTATGTCTGCACCAA 180
consensus_9671#2 ------------------------------------------------------------
consensus_9671#1 ------------------------------------------------------------
consensus_9671#0 TATACTGCATCTCACTACTTTAGTATTGCGAGATTCTGCAGAAGCAATTGCCGCTGCTAG 240
consensus_9671#2 ------------------------------------------------------------
consensus_9671#1 ------------------------------------------------------------
consensus_9671#0 TCTTTACATTGCTGCAAAGTGGAACGGAACAGACATTCAGTCTTCAAACGGGGAGTGGTA 300
consensus_9671#2 ------------------------------------------------------------
consensus_9671#1 ------------------------------------------------------------
consensus_9671#0 CCATATTTTTTCCCCGATGCTGACTTTTGAGGAAGTCTCCAAAATAACAGACGAATTCAC 360
consensus_9671#2 ------------------------------------------------------------
consensus_9671#1 ------------------------------------------------------------
consensus_9671#0 CCTTACTTTCCAAGAGTGCGATTTAAAAATCAGAGAGCAACTGCGCTGTTTCCGTCCCGG 420
consensus_9671#2 ------------------------------------------------------------
consensus_9671#1 ------------------------------------------------------------
consensus_9671#0 AAGTTACAAAGAGAACGAAGAGAGGATCTTGTCAATAATCCTCCTCGAGCTCAAGAACCT 480
consensus_9671#2 ------------------------------------------------------------
consensus_9671#1 ------------------------------------------------------------
consensus_9671#0 CAGAGGAGACCAGTTCCTGATTCTCAACAAAAAGCTGATTCTTGGAAAACAGAGAAAAGA 540
consensus_9671#2 ------------------------------------------------------------
consensus_9671#1 ------------------------------------------------------------
consensus_9671#0 CCTTACAATTCGACAAATTCTAGTGCACCTCAAGTCCCATCTCAACATCCAAATCACCAT 600
consensus_9671#2 ------------------------------------------------------------
consensus_9671#1 ------------------------------------------------------------
consensus_9671#0 GCTCGAAGCCATGCTGGTGGCTCCCAGAATACACAGATGAATCATCCATATCATGGACAT 660
consensus_9671#2 ------------------------------------------------------------
consensus_9671#1 ------------------------------------------------------------
consensus_9671#0 AATCGGGCCCCACAATCACATGTTTATGGGAACGAACATCTCAACAGATCTCATTCTAAC 720
consensus_9671#2 ------------------------------------------------------------
consensus_9671#1 ------------------------------------------------------------
consensus_9671#0 CGTCCTCCAGGTCCTGGGAATAATGAACCGGATCCTAAACGTCAG---CGATTTGATCGC 777
consensus_9671#2 ------------------------------GATCCTAAACGTCAG---CGATTTGATCGC 27
consensus_9671#1 ----------------------------GGGACCACACGATTGAAGCCTGATCTAAGTGC 32
** * * * * *** * * **
consensus_9671#0 CCATTCCCAAATCAGTGTCAACGATCACCACAACCTCACTTGTCTGGTGGACATCATCCC 837
consensus_9671#2 CCATTCCCAAATCAGTGTCAACGATCACCACAACCTCACTTGTCTGGTGGACATCATCCC 87
consensus_9671#1 TAATATTTGAAT--ATTTTCTTGATTAATATAGTTTAGCATGGTGTGTGCATTTTCTGCC 90
** *** * * *** * * * * * ** *** * * * **
consensus_9671#0 GACGGAACAGCCCGTGCAAATCGTATGGAGAGTTCTGTCTCCCATTCTGGAGGTGGCGAA 897
consensus_9671#2 GACGGAACAGCCCGT--------------------------------------------- 102
consensus_9671#1 ACATTCGTGAATTACGGCATACAGATAGCGAT---------------------------- 122
consensus_9671#0 CACAAAGTACATTATCAATCTGCTAATCGTATCCATGGAACAGATTACAGGATGGCACAA 957
consensus_9671#2 ------------------------------------------------------------
consensus_9671#1 ------------------------------------------------------------
consensus_9671#0 TCCACTGGTTACAATGCTGTTCCAAATAAGCCACCTTACGGACGAGATGAACATGAAGAC 1017
consensus_9671#2 ------------------------------CCACCTTACGGACGAGATGAACATGAAGAC 132
consensus_9671#1 --------GTACATATGCTAAACTGCTTTTTTTTGTTTAAAAGTATACCTACTTGCAGTT 174
** * * * ** ** **
consensus_9671#0 TCACGTCTTAACTCAGGGAATTCTCGTTCTGTAAAACCAACTGGTCATCCACAAGGAAAC 1077
consensus_9671#2 TCACGTCTTAACTCAGGGAATTCTCGTTCTGTAAAACCAACTGGTCATCCACAAGGAAAC 192
consensus_9671#1 TGTTGACTCAAAACAGTCAGTTCGCCTTTCGTA--TTTGTCTAGTCTGTTAAGATCAACT 232
* * ** ** *** * *** * ** *** ** *** * * **
consensus_9671#0 ACACGAGTGAAGCCTGATCTAAATGACTATTTTTGAATATTTTCTTGATTAATATAGTTT 1137
consensus_9671#2 ACACGAGTGAAGCCTGATCTAAATGACTATTTTTGAATATTTTCTTGATTAATATAGTTT 252
consensus_9671#1 GTAAAGTCTTTCTTCTTTTCCCATTACTGTGTTTATTAGTAGTGCATGTCCTGGATGTTG 292
* * ** *** * *** * * * ***
consensus_9671#0 TACATGGTGTGTGCATTTTTTGCCACATTCCTGAATTTCCGCATACAGATAGCGTTGTAC 1197
consensus_9671#2 TACATGGTGTGTGCATTTTTTGCCACATTCCTGAATTTCCGCATACAGATAGCGTTGTAC 312
consensus_9671#1 TGATTCGCGTAAGAATTTTTATCTTAATTGCTTT-TGTCCGAATAGTTTGGTACTTGTGT 351
* * * ** * ****** * *** ** * **** *** ****
consensus_9671#0 ATATGTTAAACTGCTTTTTTTTGTTTAAAAGTATACCTACTTGCAGTTTGTTGACTCAAA 1257
consensus_9671#2 ATATGTTAAACTGCTTTTTTTTTGT----------------------------------- 337
consensus_9671#1 GTATTTCTTAATACATTTGTGTAGTTATTAAAAAAAACAA-------------------- 391
*** * * * * *** * * *
consensus_9671#0 ACAGTCAGTTCGCCTTTCGTATTTGTCTAGTCTTTTAAGATCAACTGTAAAGTCTTTCTT 1317
consensus_9671#2 ------------------------------------------------------------
consensus_9671#1 ------------------------------------------------------------
consensus_9671#0 CTTTTCCCATTACTGTGTTTATTAGTAGTGCATGTTTTTTTGTTGTTTTCGCGTAAGAAT 1377
consensus_9671#2 ------------------------------------------------------------
consensus_9671#1 ------------------------------------------------------------
consensus_9671#0 TTTTATATTAATTGCTTTTATACGAATAGTTTGGTACTTTTGTGTATTTCTTAATACATT 1437
consensus_9671#2 ------------------------------------------------------------
consensus_9671#1 ------------------------------------------------------------
consensus_9671#0 TGTGTAGTTATTACTGTTCGATGTCTATTACCAATTTTCTTTGTATTGCCATTTATTTTG 1497
consensus_9671#2 ------------------------------------------------------------
consensus_9671#1 ------------------------------------------------------------
consensus_9671#0 TAGTACATTGAATAATTTTCAGTTACTAATGGAAAAAAAAAAAAAAAA 1545
consensus_9671#2 ------------------------------------------------
consensus_9671#1 ------------------------------------------------
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| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||