cluster # 1007

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Takifugu rubripes
cluster # 1007 cluster # 1007 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_1007#0 length = 447 sequences # 1

consensus_1007#1 length = 64 sequences # 1

consensusID : consensus_1007#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 447
fasta sequence

                              [TTACTTCTGTATGTGCTGCGCCACCTGCCAACTGAAGAGAGACATAAATCGAAGGAAGGAGCAAAACGTTTTCTGAGCGATCCACTTTTCTTTTTTTTTCTCTAATTCATCCATTTTAGTTCCTGACCAGCAATGAGATCCCTCTGTGTTTGAAGATGACCTGAAATGTACTGCTGTTATTAGTAATAGTGTTATAATGAACATGGAGAAAAAAAACTCAAATTGTGAGGAACGGAAATCAGCAAAGGTGTTATTTTTTGGTTTAGACTTATTTTTTGGTTTAAAACTAGATGTGACACCACAAAGGCATCAACAGTGTTTATTACATGCAACACAGTCTATAAACTGGGTAAATATCATGGCGTTGCTAACTGCTCGAGATGGCTGCCGTTGTATTGTATTGTATCACTCTTCTAAAGCAGCTTTGTCTTTTGGACTTCTTTAATA]

[+] EMBL CA845059             [TTACTTCTGTATGTGCTGCGCCACCTGCCAACTGAAGAGAGACATAAATCGAAGGAAGGAGCAAAACGTTTTCTGAGCGATCCACTTTTCTTTTTTTTTCTCTAATTCATCCATTTTAGTTCCTGACCAGCAATGAGATCCCTCTGTGTTTGAAGATGACCTGAAATGTACTGCTGTTATTAGTAATAGTGTTATAATGAACATGGAGAAAAAAAACTCAAATTGTGAGGAACGGAAATCAGCAAAGGTGTTATTTTTTGGTTTAGACTTATTTTTTGGTTTAAAACTAGATGTGACACCACAAAGGCATCAACAGTGTTTATTACATGCAACACAGTCTATAAACTGGGTAAATATCATGGCGTTGCTAACTGCTCGAGATGGCTGCCGTTGTATTGTATTGTATCACTCTTCTAAAGCAGCTTTGTCTTTTGGACTTCTTTAATA]




>consensus_1007#0
TTACTTCTGTATGTGCTGCGCCACCTGCCAACTGAAGAGAGACATAAATCGAAGGAAGGA
GCAAAACGTTTTCTGAGCGATCCACTTTTCTTTTTTTTTCTCTAATTCATCCATTTTAGT
TCCTGACCAGCAATGAGATCCCTCTGTGTTTGAAGATGACCTGAAATGTACTGCTGTTAT
TAGTAATAGTGTTATAATGAACATGGAGAAAAAAAACTCAAATTGTGAGGAACGGAAATC
AGCAAAGGTGTTATTTTTTGGTTTAGACTTATTTTTTGGTTTAAAACTAGATGTGACACC
ACAAAGGCATCAACAGTGTTTATTACATGCAACACAGTCTATAAACTGGGTAAATATCAT
GGCGTTGCTAACTGCTCGAGATGGCTGCCGTTGTATTGTATTGTATCACTCTTCTAAAGC
AGCTTTGTCTTTTGGACTTCTTTAATA

consensusID : consensus_1007#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 64
fasta sequence

                              [TCTTCTATCGCAGCTTTGTCTTTTGGACTTCTTTAATAAATTCAGTCATAAACTTCCACAATCA]

[+] EMBL CA847068             [TCTTCTATCGCAGCTTTGTCTTTTGGACTTCTTTAATAAATTCAGTCATAAACTTCCACAATCA]




>consensus_1007#1
TCTTCTATCGCAGCTTTGTCTTTTGGACTTCTTTAATAAATTCAGTCATAAACTTCCACA
ATCA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_1007#0      TTACTTCTGTATGTGCTGCGCCACCTGCCAACTGAAGAGAGACATAAATCGAAGGAAGGA 60
consensus_1007#1      ------------------------------------------------------------
                                                                                  

consensus_1007#0      GCAAAACGTTTTCTGAGCGATCCACTTTTCTTTTTTTTTCTCTAATTCATCCATTT-TAG 119
consensus_1007#1      --------TCTTCT-ATCGCAGCTTTGTCTTTTGGACTTCTTTAATAAATTCAGTCATAA 51
                              * **** * **   *  * *  ***    **** ****  ** ** *  ** 

consensus_1007#0      TTCCTGACCAGCAATGAGATCCCTCTGTGTTTGAAGATGACCTGAAATGTACTGCTGTTA 179
consensus_1007#1      ACTTCCACAATCA----------------------------------------------- 64
                            ** * **                                               

consensus_1007#0      TTAGTAATAGTGTTATAATGAACATGGAGAAAAAAAACTCAAATTGTGAGGAACGGAAAT 239
consensus_1007#1      ------------------------------------------------------------
                                                                                  

consensus_1007#0      CAGCAAAGGTGTTATTTTTTGGTTTAGACTTATTTTTTGGTTTAAAACTAGATGTGACAC 299
consensus_1007#1      ------------------------------------------------------------
                                                                                  

consensus_1007#0      CACAAAGGCATCAACAGTGTTTATTACATGCAACACAGTCTATAAACTGGGTAAATATCA 359
consensus_1007#1      ------------------------------------------------------------
                                                                                  

consensus_1007#0      TGGCGTTGCTAACTGCTCGAGATGGCTGCCGTTGTATTGTATTGTATCACTCTTCTAAAG 419
consensus_1007#1      ------------------------------------------------------------
                                                                                  

consensus_1007#0      CAGCTTTGTCTTTTGGACTTCTTTAATA 447
consensus_1007#1      ----------------------------

Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr)