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These datas are free for academic use only, please contact me for any other use. Takifugu rubripes see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1038#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 636 fasta sequence
[TGGAGAAGGAAAGAAACTTGTGATAGAAGATTCACTAGTTCCAGATACAGAAATAGATGATGAGAAAACAACAAATGACAATGAAAACTCTAGGAAAAAAGGAAAACATTTCATCAAGAAAAATCTGGTAGTTGAAGAAGCTGTTGTTGACCCAGGGGTGCATTTTCATGCTGGACTTTCTGACTGCAAAGTTGTTATTGGAGAAGCAGCAGAACTGGAGTGTAAACTAAGCAATGAAGATTGCAAAGGAATGTGGTACAAAAATGGAGAAGAGATTAAATCAGATGAGGGTATCACCATTTCAAAAGAAGGAAGTTTCCACAGGCTAAAAATTCAGAAAGTCACAGAGGAATATGCTGGCAAATACAAATTTGAAGCTGATGGGCGGAAGACAGAAGCCTTGATTGTTGTTGAAGATCCACCCCGTTTTGATGCAGAAGAACTTGAAGCATTTAAAAAAACAGTAACAGTGAAAAGGGGACACAAAGCTATCTATAAGTTACCTTTTATTGGACGGGAGCCGATAAAAGTTCAGTGGTACCTTGATGGTGAAGAGCTTTCAGATGAAGCAAACATCAAGTTAGAGCATTCAGATGGTAGCAGCCGGCTCATTCTAACCAAGCTGCAGCGCAAGGA]
[+] EMBL BU804528 [TGGAGAAGGAAAGAAACTTGTGATAGAAGATTCACTAGTTCCAGATACAGAAATAGATGATGAGAAAACAACAAATGACAATGAAAACTCTAGGAAAAAAGGAAAACATTTCATCAAGAAAAATCTGGTAGTTGAAGAAGCTGTTGTTGACCCAGGGGTGCATTTTCATGCTGGACTTTCTGACTGCAAAGTTGTTATTGGAGAAGCAGCAGAACTGGAGTGTAAACTAAGCAATGAAGATTGCAAAGGAATGTGGTACAAAAATGGAGAAGAGATTAAATCAGATGAGGGTATCACCATTTCAAAAGAAGGAAGTTTCCACAGGCTAAAAATTCAGAAAGTCACAGAGGAATATGCTGGCAAATACAAATTTGAAGCTGATGGGCGGAAGACAGAAGCCTTGATTGTTGTTGAAGATCCACCCCGTTTTGATGCAGAAGAACTTGAAGCATTTAAAAAAACAGTAACAGTGAAAAGGGGACACAAAGCTATCTATAAGTTACCTTTTATTGGACGGGAGCCGATAAAAGTTCAGTGGTACCTTGATGGTGAAGAGCTTTCAGATGAAGCAAACATCAAGTTAGAGCATTCAGATGGTAGCAGCCGGCTCATTCTAACCAAGCTGCAGCGCAAGGA]
consensusID : consensus_1038#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 624 fasta sequence
[ATAGGCATGCATGCTGCTGGAAGAATCTATTACANTCAATAACACAGAAAACATAAAGATCAGGAGAAGACAGAATTGACCAGATTGTTGTTTGAAAGGAAGCGCAGAGCAGAGAAAACAGAGAACTGTGAGAAGAGTCTCTGATTAAACTCAAGAAAAAAACGCAATGTGGAAGAAGTCAAAGGTGACAGAGCAAACTGCATCTGGGCAGGCAGACCCAGGGGTGCATTTTCATGCTGGACTTTCTGACTGCAAAGTTGTTATTGGAGAAGCAGCAGAACTGGAGTGTAAACTAAGCAATGAAGATTGCAAAGGAATGTGGTACAAAAATGGAGAAGAGATTAAATCAGATGAGGGTATCACCATTTCAAAAGAAGGAAGTTTCCACAGGCTAAAAATTCAGAAAGTCACAGAGGAATATGCTGGCAAATACAAATTTGAAGCTGATGGGCGGAAGACAGAAGCCTTGATTGTTGTTGAAGATCCACCCCGTTTTGATGCAGAAGAACTTGAAGCATTTAAAAAAACAGTAACAGTGAAAAGGGGACACAAAGCTATCTATAAGTTACCTTTTATTGGACGGGAGCCGATAAAAGTTCAGTGGTACCTTGATGGTGAAGAGCT]
[+] EMBL BU805667 [ATAGGCATGCATGCTGCTGGAAGAATCTATTACANTCAATAACACAGAAAACATAAAGATCAGGAGAAGACAGAATTGACCAGATTGTTGTTTGAAAGGAAGCGCAGAGCAGAGAAAACAGAGAACTGTGAGAAGAGTCTCTGATTAAACTCAAGAAAAAAACGCAATGTGGAAGAAGTCAAAGGTGACAGAGCAAACTGCATCTGGGCAGGCAGACCCAGGGGTGCATTTTCATGCTGGACTTTCTGACTGCAAAGTTGTTATTGGAGAAGCAGCAGAACTGGAGTGTAAACTAAGCAATGAAGATTGCAAAGGAATGTGGTACAAAAATGGAGAAGAGATTAAATCAGATGAGGGTATCACCATTTCAAAAGAAGGAAGTTTCCACAGGCTAAAAATTCAGAAAGTCACAGAGGAATATGCTGGCAAATACAAATTTGAAGCTGATGGGCGGAAGACAGAAGCCTTGATTGTTGTTGAAGATCCACCCCGTTTTGATGCAGAAGAACTTGAAGCATTTAAAAAAACAGTAACAGTGAAAAGGGGACACAAAGCTATCTATAAGTTACCTTTTATTGGACGGGAGCCGATAAAAGTTCAGTGGTACCTTGATGGTGAAGAGCT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_1038#0 --------------------------------------------TGGAGAAGGAAAGAAA 16
consensus_1038#1 ATAGGCATGCATGCTGCTGGAAGAATCTATTACANTCAATAACACAGAAAACATAAAGAT 60
** ** ** *
consensus_1038#0 CTTGTGATAGAAGA-TTCACTAGTTCCAGATACAGAAATAGATGATGAG--AAAACAACA 73
consensus_1038#1 CAGGAGAAGACAGAATTGACCAGATTGTTGTTTGAAAGGAAGCGCAGAGCAGAGAAAACA 120
* * ** *** ** ** ** * * ** * * *** * * ****
consensus_1038#0 AATGACAATGAAAA----CTCTAGGAAAA---AAGGAAAACATTTCATCAAGAAAAATCT 126
consensus_1038#1 GAGAACTGTGAGAAGAGTCTCTGATTAAACTCAAGAAAAAAACGCAATGTGGAAGAAGTC 180
* ** *** ** **** *** *** **** * ** *** **
consensus_1038#0 ---GGTAGTTGAAGAAGCTGTTGTTG---------ACCCAGGGGTGCATTTTCATGCTGG 174
consensus_1038#1 AAAGGTGACAGAGCAAACTGCATCTGGGCAGGCAGACCCAGGGGTGCATTTTCATGCTGG 240
*** ** ** *** ** *************************
consensus_1038#0 ACTTTCTGACTGCAAAGTTGTTATTGGAGAAGCAGCAGAACTGGAGTGTAAACTAAGCAA 234
consensus_1038#1 ACTTTCTGACTGCAAAGTTGTTATTGGAGAAGCAGCAGAACTGGAGTGTAAACTAAGCAA 300
************************************************************
consensus_1038#0 TGAAGATTGCAAAGGAATGTGGTACAAAAATGGAGAAGAGATTAAATCAGATGAGGGTAT 294
consensus_1038#1 TGAAGATTGCAAAGGAATGTGGTACAAAAATGGAGAAGAGATTAAATCAGATGAGGGTAT 360
************************************************************
consensus_1038#0 CACCATTTCAAAAGAAGGAAGTTTCCACAGGCTAAAAATTCAGAAAGTCACAGAGGAATA 354
consensus_1038#1 CACCATTTCAAAAGAAGGAAGTTTCCACAGGCTAAAAATTCAGAAAGTCACAGAGGAATA 420
************************************************************
consensus_1038#0 TGCTGGCAAATACAAATTTGAAGCTGATGGGCGGAAGACAGAAGCCTTGATTGTTGTTGA 414
consensus_1038#1 TGCTGGCAAATACAAATTTGAAGCTGATGGGCGGAAGACAGAAGCCTTGATTGTTGTTGA 480
************************************************************
consensus_1038#0 AGATCCACCCCGTTTTGATGCAGAAGAACTTGAAGCATTTAAAAAAACAGTAACAGTGAA 474
consensus_1038#1 AGATCCACCCCGTTTTGATGCAGAAGAACTTGAAGCATTTAAAAAAACAGTAACAGTGAA 540
************************************************************
consensus_1038#0 AAGGGGACACAAAGCTATCTATAAGTTACCTTTTATTGGACGGGAGCCGATAAAAGTTCA 534
consensus_1038#1 AAGGGGACACAAAGCTATCTATAAGTTACCTTTTATTGGACGGGAGCCGATAAAAGTTCA 600
************************************************************
consensus_1038#0 GTGGTACCTTGATGGTGAAGAGCTTTCAGATGAAGCAAACATCAAGTTAGAGCATTCAGA 594
consensus_1038#1 GTGGTACCTTGATGGTGAAGAGCT------------------------------------ 624
************************
consensus_1038#0 TGGTAGCAGCCGGCTCATTCTAACCAAGCTGCAGCGCAAGGA 636
consensus_1038#1 ------------------------------------------
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| Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |