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Takifugu rubripes
cluster # 1064 cluster # 1064       Sequences # 2       consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_1064#0 length = 600 sequences # 1  
 consensus_1064#1 length = 171 sequences # 1  
consensusID : consensus_1064#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 600
fasta sequence 
                              [TGGTTTCTACCACCTGCCGGGCACGTTGACGCTCCGCGGTGGGCGCCCCTGTCCGGCTTTGATTAGCGGGACGTGAGTGCGGATTAGCGGCCCGGATTTGACCCGTTTTTTTTCTGTTGACCGACCTAATTGGACGACAACACGCACTTTTATCACGAATAAGTCATGTTTAAAACGTTGGCCGTTGGCCGTTAGACTCTACTCGGGGCATGCTGAAGATCAGAAACCCCCCTGCTGAATAATATGTTCATCTGGACGATGGGGGCCCGTTTTAAATCGGCAACTTGAGCTGCAGCAAACATGGCAGATACAGACCTGGACTTCCAGACAGGCGATGCCGGGGCATCCTCCACCTACCCCATGCAGTGCTCTGCCCTGCGTAAGAACGGCTTCGTGCTGCTGAAAGGGCGACCCTGCAAGATTGTCGAGATGTCCACCTCCAAGACGGGCAAGCACGGCCACGCCAAGGTGCACTTGGTTGGCATCGACATCTTCTCCGGGAAGAAGTATGAAGATATCTGCCCTTCAACCCACAACATGGATGTCCCCAACATCAAGAGGATGGACTACCAGCTGATCGGAATCCAAGATGGCTACCTG]

[+] EMBL BU807633             [TGGTTTCTACCACCTGCCGGGCACGTTGACGCTCCGCGGTGGGCGCCCCTGTCCGGCTTTGATTAGCGGGACGTGAGTGCGGATTAGCGGCCCGGATTTGACCCGTTTTTTTTCTGTTGACCGACCTAATTGGACGACAACACGCACTTTTATCACGAATAAGTCATGTTTAAAACGTTGGCCGTTGGCCGTTAGACTCTACTCGGGGCATGCTGAAGATCAGAAACCCCCCTGCTGAATAATATGTTCATCTGGACGATGGGGGCCCGTTTTAAATCGGCAACTTGAGCTGCAGCAAACATGGCAGATACAGACCTGGACTTCCAGACAGGCGATGCCGGGGCATCCTCCACCTACCCCATGCAGTGCTCTGCCCTGCGTAAGAACGGCTTCGTGCTGCTGAAAGGGCGACCCTGCAAGATTGTCGAGATGTCCACCTCCAAGACGGGCAAGCACGGCCACGCCAAGGTGCACTTGGTTGGCATCGACATCTTCTCCGGGAAGAAGTATGAAGATATCTGCCCTTCAACCCACAACATGGATGTCCCCAACATCAAGAGGATGGACTACCAGCTGATCGGAATCCAAGATGGCTACCTG]




>consensus_1064#0
TGGTTTCTACCACCTGCCGGGCACGTTGACGCTCCGCGGTGGGCGCCCCTGTCCGGCTTT
GATTAGCGGGACGTGAGTGCGGATTAGCGGCCCGGATTTGACCCGTTTTTTTTCTGTTGA
CCGACCTAATTGGACGACAACACGCACTTTTATCACGAATAAGTCATGTTTAAAACGTTG
GCCGTTGGCCGTTAGACTCTACTCGGGGCATGCTGAAGATCAGAAACCCCCCTGCTGAAT
AATATGTTCATCTGGACGATGGGGGCCCGTTTTAAATCGGCAACTTGAGCTGCAGCAAAC
ATGGCAGATACAGACCTGGACTTCCAGACAGGCGATGCCGGGGCATCCTCCACCTACCCC
ATGCAGTGCTCTGCCCTGCGTAAGAACGGCTTCGTGCTGCTGAAAGGGCGACCCTGCAAG
ATTGTCGAGATGTCCACCTCCAAGACGGGCAAGCACGGCCACGCCAAGGTGCACTTGGTT
GGCATCGACATCTTCTCCGGGAAGAAGTATGAAGATATCTGCCCTTCAACCCACAACATG
GATGTCCCCAACATCAAGAGGATGGACTACCAGCTGATCGGAATCCAAGATGGCTACCTG

consensusID : consensus_1064#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 171
fasta sequence 
                              [ACTCGGGCCTCAGCATCCTCAGCGGGCCGCGGTACTAGGCCGCAACTAGCTTAGCCCAGAAACGGCACAAATACGCCGTTTTATCGCTCCGGGAGGCTGGTTTTTACCACCTGCCGGGCACGTTGACGCTCCGCGGTGGGCGCCCCTGTCCGGNNNCATTTGNNNATTAGC]

[+] EMBL BU804786             [ACTCGGGCCTCAGCATCCTCAGCGGGCCGCGGTACTAGGCCGCAACTAGCTTAGCCCAGAAACGGCACAAATACGCCGTTTTATCGCTCCGGGAGGCTGGTTTTTACCACCTGCCGGGCACGTTGACGCTCCGCGGTGGGCGCCCCTGTCCGGNNNCATTTGNNNATTAGC]




>consensus_1064#1
ACTCGGGCCTCAGCATCCTCAGCGGGCCGCGGTACTAGGCCGCAACTAGCTTAGCCCAGA
AACGGCACAAATACGCCGTTTTATCGCTCCGGGAGGCTGGTTTTTACCACCTGCCGGGCA
CGTTGACGCTCCGCGGTGGGCGCCCCTGTCCGGNNNCATTTGNNNATTAGC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_1064#0      TGGTTTCTACCACCTGCCGGGCACGTTGACGCTCCGCGGTGGGCGCCCCTGTCCGGCTTT 60
consensus_1064#1      --------------------------------------------ACTCGGGCCTCAGCAT 16
                                                                   * *  * *      *

consensus_1064#0      GATTAGCGGGACGTGAGTGCGGATTAGCGGCCCGGATTTGACCCGTTTTTTTTCTGTTGA 120
consensus_1064#1      CCTCAGCGGGCCGCG-GTACTAGGCCGCAACT-AGCTTAGCCCAGAAACGGCACAAATAC 74
                        * ****** ** * ** *      **  *   * ** * ** *        *   *  

consensus_1064#0      CCGACCTAATTGGACGACAACACGCACTTTTATCACGAATAAGTCATGTTTAAAACGTTG 180
consensus_1064#1      GCCGTTTTATCGCTCCGGGAGGCTGGTTTTTACCACCTGCCGGGCACGTT---GACGCTC 131
                       *    * ** *  *    *  *    ***** ***      * ** ***    *** * 

consensus_1064#0      GCCGTTGGCCGTTAGACTCTACTCGGGGCATGCTGAAGATCAGAAACCCCCCTGCTGAAT 240
consensus_1064#1      CGCGGTGGGCGC----CCCTGTCCGGNNNCATTTGNNNATTAGC---------------- 171
                        ** *** **     * **   ***       **   ** **                 

consensus_1064#0      AATATGTTCATCTGGACGATGGGGGCCCGTTTTAAATCGGCAACTTGAGCTGCAGCAAAC 300
consensus_1064#1      ------------------------------------------------------------
                                                                                  

consensus_1064#0      ATGGCAGATACAGACCTGGACTTCCAGACAGGCGATGCCGGGGCATCCTCCACCTACCCC 360
consensus_1064#1      ------------------------------------------------------------
                                                                                  

consensus_1064#0      ATGCAGTGCTCTGCCCTGCGTAAGAACGGCTTCGTGCTGCTGAAAGGGCGACCCTGCAAG 420
consensus_1064#1      ------------------------------------------------------------
                                                                                  

consensus_1064#0      ATTGTCGAGATGTCCACCTCCAAGACGGGCAAGCACGGCCACGCCAAGGTGCACTTGGTT 480
consensus_1064#1      ------------------------------------------------------------
                                                                                  

consensus_1064#0      GGCATCGACATCTTCTCCGGGAAGAAGTATGAAGATATCTGCCCTTCAACCCACAACATG 540
consensus_1064#1      ------------------------------------------------------------
                                                                                  

consensus_1064#0      GATGTCCCCAACATCAAGAGGATGGACTACCAGCTGATCGGAATCCAAGATGGCTACCTG 600
consensus_1064#1      ------------------------------------------------------------


Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner    (hubert.wassner@noos.fr)