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These datas are free for academic use only, please contact me for any other use. Takifugu rubripes see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1123#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 592 fasta sequence
[GACTTTATGGCGTGTTTGCTGCGAAAGCTGACCTGGAACGTCTGATCAAAACTCAAAAATCTGCTAAAGAGGTCGCTGTGAACATGACTCCTCTCCTGTCGCTCCTGTTGCCCGGCTTCCTTTTACTGGGCCTGGCGTCCCCTGCGATCACTGATGGATCCCTGGAGAAGCTCACCAATGGGAATACAGACTTTGCAGCGAAGTTGTACCAAGCGGTCGCCAGCAGAACTGACGACAACGTTTGCTTGTCTACTTTTGCCTTATCCACTGCACTGTCTGCATTGCTGAGCGCCACCAGTGGTCCGACCCAAGAGCAACTGTTGCAGGGACTCGGTCTGACTGGACTGGATGCTCAGATGCTGCCAGAGCTGTTCCAGAATCTGAGGACTGCCATTCAGCCGGGAAACATAACCAACCTGAAGCAGGCCGTGGCTCTTCTCCCTTCCCACAACTTTGAAGTGTCAGCATCCCTCCGCGAATTAGTTCAAACAAAATTTGGGGGATACATGCCAAGTCTGAAGTACACTGACCAAGCCGAAGCCATTAGTACCATCAACCGCTGGGCCCAGGATCAGACCGGAGACCAGATTCA]
[+] EMBL BU805220 [GACTTTATGGCGTGTTTGCTGCGAAAGCTGACCTGGAACGTCTGATCAAAACTCAAAAATCTGCTAAAGAGGTCGCTGTGAACATGACTCCTCTCCTGTCGCTCCTGTTGCCCGGCTTCCTTTTACTGGGCCTGGCGTCCCCTGCGATCACTGATGGATCCCTGGAGAAGCTCACCAATGGGAATACAGACTTTGCAGCGAAGTTGTACCAAGCGGTCGCCAGCAGAACTGACGACAACGTTTGCTTGTCTACTTTTGCCTTATCCACTGCACTGTCTGCATTGCTGAGCGCCACCAGTGGTCCGACCCAAGAGCAACTGTTGCAGGGACTCGGTCTGACTGGACTGGATGCTCAGATGCTGCCAGAGCTGTTCCAGAATCTGAGGACTGCCATTCAGCCGGGAAACATAACCAACCTGAAGCAGGCCGTGGCTCTTCTCCCTTCCCACAACTTTGAAGTGTCAGCATCCCTCCGCGAATTAGTTCAAACAAAATTTGGGGGATACATGCCAAGTCTGAAGTACACTGACCAAGCCGAAGCCATTAGTACCATCAACCGCTGGGCCCAGGATCAGACCGGAGACCAGATTCA]
consensusID : consensus_1123#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 569 fasta sequence
[CGCTGTGAACATGACTCCTCTCCTGTCGCTCCTGTTGCCCGGCTTCCTTTTACTGGGCCTGGCGTCCCCTGCGATCACTGATGGATCCCTGGAGAAGCTCACCAATGGGAATACAGACTTTGCAGCGAAGTTGTACCAAGCGGTCGCCAGCAGAACTGACGACAACGTTTGCTTGTCTACATTTGCCTTATCCACTGCACTGTCTGCATTGCTGAGCGCCACCAGTGGTCCGACCCAAGAGCAACTGTTGCAGGGACTCGGTCTGACTGGACTGGATGCTCAGATGCTGCCAGGTACAACAGGATTATGGAATGGACTATTTTCTGATCTTAAATTGTGATGTGGCGATTTTTGCTTTCAGAGCTGTTCCAGAATCTGAGGACTGCCATTCAGCCGGGAAACATAACCAACCTGAAACAGGCCGTGGCTCTTCTCCCTTCCCACAACTTTGAAGTGTCAGCATCCCTCCGCGAGTTAGTTCAAACAAAATTTGGGGGATACATGCCAAGTCTGAAGTACACTGACCAAGCCGAAGCCATTAGTACCATCAACCGCTGGGCCCAGGATCA]
[-] EMBL CA589183 [CGCTGTGAACATGACTCCTCTCCTGTCGCTCCTGTTGCCCGGCTTCCTTTTACTGGGCCTGGCGTCCCCTGCGATCACTGATGGATCCCTGGAGAAGCTCACCAATGGGAATACAGACTTTGCAGCGAAGTTGTACCAAGCGGTCGCCAGCAGAACTGACGACAACGTTTGCTTGTCTACATTTGCCTTATCCACTGCACTGTCTGCATTGCTGAGCGCCACCAGTGGTCCGACCCAAGAGCAACTGTTGCAGGGACTCGGTCTGACTGGACTGGATGCTCAGATGCTGCCAGGTACAACAGGATTATGGAATGGACTATTTTCTGATCTTAAATTGTGATGTGGCGATTTTTGCTTTCAGAGCTGTTCCAGAATCTGAGGACTGCCATTCAGCCGGGAAACATAACCAACCTGAAACAGGCCGTGGCTCTTCTCCCTTCCCACAACTTTGAAGTGTCAGCATCCCTCCGCGAGTTAGTTCAAACAAAATTTGGGGGATACATGCCAAGTCTGAAGTACACTGACCAAGCCGAAGCCATTAGTACCATCAACCGCTGGGCCCAGGATCA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_1123#0 GACTTTATGGCGTGTTTGCTGCGAAAGCTGACCTGGAACGTCTGATCAAAACTCAAAAAT 60
consensus_1123#1 ------------------------------------------------------------
consensus_1123#0 CTGCTAAAGAGGTCGCTGTGAACATGACTCCTCTCCTGTCGCTCCTGTTGCCCGGCTTCC 120
consensus_1123#1 -------------CGCTGTGAACATGACTCCTCTCCTGTCGCTCCTGTTGCCCGGCTTCC 47
***********************************************
consensus_1123#0 TTTTACTGGGCCTGGCGTCCCCTGCGATCACTGATGGATCCCTGGAGAAGCTCACCAATG 180
consensus_1123#1 TTTTACTGGGCCTGGCGTCCCCTGCGATCACTGATGGATCCCTGGAGAAGCTCACCAATG 107
************************************************************
consensus_1123#0 GGAATACAGACTTTGCAGCGAAGTTGTACCAAGCGGTCGCCAGCAGAACTGACGACAACG 240
consensus_1123#1 GGAATACAGACTTTGCAGCGAAGTTGTACCAAGCGGTCGCCAGCAGAACTGACGACAACG 167
************************************************************
consensus_1123#0 TTTGCTTGTCTACTTTTGCCTTATCCACTGCACTGTCTGCATTGCTGAGCGCCACCAGTG 300
consensus_1123#1 TTTGCTTGTCTACATTTGCCTTATCCACTGCACTGTCTGCATTGCTGAGCGCCACCAGTG 227
************* **********************************************
consensus_1123#0 GTCCGACCCAAGAGCAACTGTTGCAGGGACTCGGTCTGACTGGACTGGATGCTCAGATGC 360
consensus_1123#1 GTCCGACCCAAGAGCAACTGTTGCAGGGACTCGGTCTGACTGGACTGGATGCTCAGATGC 287
************************************************************
consensus_1123#0 TGCCAG------------------------------------------------------ 366
consensus_1123#1 TGCCAGGTACAACAGGATTATGGAATGGACTATTTTCTGATCTTAAATTGTGATGTGGCG 347
******
consensus_1123#0 --------------AGCTGTTCCAGAATCTGAGGACTGCCATTCAGCCGGGAAACATAAC 412
consensus_1123#1 ATTTTTGCTTTCAGAGCTGTTCCAGAATCTGAGGACTGCCATTCAGCCGGGAAACATAAC 407
**********************************************
consensus_1123#0 CAACCTGAAGCAGGCCGTGGCTCTTCTCCCTTCCCACAACTTTGAAGTGTCAGCATCCCT 472
consensus_1123#1 CAACCTGAAACAGGCCGTGGCTCTTCTCCCTTCCCACAACTTTGAAGTGTCAGCATCCCT 467
********* **************************************************
consensus_1123#0 CCGCGAATTAGTTCAAACAAAATTTGGGGGATACATGCCAAGTCTGAAGTACACTGACCA 532
consensus_1123#1 CCGCGAGTTAGTTCAAACAAAATTTGGGGGATACATGCCAAGTCTGAAGTACACTGACCA 527
****** *****************************************************
consensus_1123#0 AGCCGAAGCCATTAGTACCATCAACCGCTGGGCCCAGGATCAGACCGGAGACCAGATTCA 592
consensus_1123#1 AGCCGAAGCCATTAGTACCATCAACCGCTGGGCCCAGGATCA------------------ 569
******************************************
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| Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |