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These datas are free for academic use only, please contact me for any other use. Takifugu rubripes see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1165#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 604 fasta sequence
[ATGGCGGTCAAGGCTGATCTCCTTCCAGTAGTTTTTGGCCTTTGAGTCTGTCCTGTGTGCCCCGGACGCCCTGTTCATAGTTGCCTTTCAGCTGTTCGACAAGACTGGCACTGGGAACATCTCCTTTGAGAATGTACGAGACATCTTCAGCCAGACCACAGTTCATCACCACATTCCCTTCAACTGGGACTGTGAGTTCATCCGGCTACACTTTGGCCATGAAAGAAACAAGAACCTGAGCTACACAGAGTTCACCCAGTTTCTGCAGGAGCTGCAGTCAGAACATGCACGTCAAGCTTTTGCACAAAAAGACAAAAGCAAAAGCGGCACCATCACCGCACTGGACTTCAGCGACATCATGGCCACCATCAGACATCACATGCTGACTCCCTTTGTAGAGGAGAACCTGGTCTCGGCTGCAGGAGGCAGCACCTCCCACATGGTGAGCTTCTCGTACTTCAACGCCTTCAACGCCCTGCTCAACAACATGGAGCTGATCCGCAAGATTTACAGCACCATCGCAGGCACGCACAGAGACGCGCTGGTCACCAAAGAGGAATTTGTTAACACTGCAAATAAATTTGGCCAGATTACTCCGATGGAG]
[+] EMBL BU805624 [ATGGCGGTCAAGGCTGATCTCCTTCCAGTAGTTTTTGGCCTTTGAGTCTGTCCTGTGTGCCCCGGACGCCCTGTTCATAGTTGCCTTTCAGCTGTTCGACAAGACTGGCACTGGGAACATCTCCTTTGAGAATGTACGAGACATCTTCAGCCAGACCACAGTTCATCACCACATTCCCTTCAACTGGGACTGTGAGTTCATCCGGCTACACTTTGGCCATGAAAGAAACAAGAACCTGAGCTACACAGAGTTCACCCAGTTTCTGCAGGAGCTGCAGTCAGAACATGCACGTCAAGCTTTTGCACAAAAAGACAAAAGCAAAAGCGGCACCATCACCGCACTGGACTTCAGCGACATCATGGCCACCATCAGACATCACATGCTGACTCCCTTTGTAGAGGAGAACCTGGTCTCGGCTGCAGGAGGCAGCACCTCCCACATGGTGAGCTTCTCGTACTTCAACGCCTTCAACGCCCTGCTCAACAACATGGAGCTGATCCGCAAGATTTACAGCACCATCGCAGGCACGCACAGAGACGCGCTGGTCACCAAAGAGGAATTTGTTAACACTGCAAATAAATTTGGCCAGATTACTCCGATGGAG]
consensusID : consensus_1165#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 289 fasta sequence
[GTCAAGCCACAAAAAGAGCCGACCCTCATGAATTGAAGGCTATTTTCCTTAAGTATGCCAGCGTGGTGGATGATGGAGAGCATTACATGACTCCCAGGGATTTTGTCCAGAGTTACCTGGGTTTACATGCACAGCCTCAGGTTAATCCCAAAACGGTGGATCTGCTAGCTGGCGTGGCTGATACGACTAAAGATGGGCTGATCTCCTTCCAGGAGTTTTTGGCCTTTGAGACTGTCCTGTGTGCCCCGGACGCCCTGTTCATAGGTGCCTTTCAGCTGTTCGACAAGAC]
[+] EMBL FR0064064 [GTCAAGCCACAAAAAGAGCCGACCCTCATGAATTGAAGGCTATTTTCCTTAAGTATGCCAGCGTGGTGGATGATGGAGAGCATTACATGACTCCCAGGGATTTTGTCCAGAGTTACCTGGGTTTACATGCACAGCCTCAGGTTAATCCCAAAACGGTGGATCTGCTAGCTGGCGTGGCTGATACGACTAAAGATGGGCTGATCTCCTTCCAGGAGTTTTTGGCCTTTGAGACTGTCCTGTGTGCCCCGGACGCCCTGTTCATAGGTGCCTTTCAGCTGTTCGACAAGAC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_1165#0 ATGGCGGTCAAGGCTGATCTCCTTCCAGTAGTTTTTGGCCTTTGAGTCTGTCCTGTGTGC 60
consensus_1165#1 ------------------------------------------------------------
consensus_1165#0 CCCGGACGCCCTGTTCATAGTTGCCTTTCAGCTGTTCGACAAGACTGGCACTGGGAACAT 120
consensus_1165#1 ------------------------------------------------------------
consensus_1165#0 CTCCTTTGAGAATGTACGAGACATCTTCAGCCAGACCACAGTTCATCACCACATTCCCTT 180
consensus_1165#1 -----------------------------GTCAAGCCACAA--AAAGAGCCGACCCTCAT 29
* ** ***** * * * * * * *
consensus_1165#0 CAACTGGGACTGTGAGTTCATCCGGCTACACTTTGGCCATGAAAGAAACAAGAACCTGAG 240
consensus_1165#1 GAATTGAAG--GCTATTTTCCTTAAGTATGCCAGCGTGGTGGATGATG-GAGAGC----A 82
** ** * * ** ** * * ** * ** *** *
consensus_1165#0 CTACACAGAGTTCACCCAGTTTCTGCAGGAGCTGCAGTCAGAACATGCACGTCAAGCTTT 300
consensus_1165#1 TTACATGACTCCCAGGGATTTTGTCCAG-AGTTAC---CTGGGTTTACATGCACAGCCTC 138
**** ** * *** * *** ** * * * * * ** * *** *
consensus_1165#0 TGCACAAAAAGACAAAAGCAAAAGCGGCACCATCACCGCACTGGACTTCAGCGACATCAT 360
consensus_1165#1 ---------AGGTTAATCCCAAAACGG--------------TGGATCTGCTAGCTGGCGT 175
** ** * *** *** **** * * * *
consensus_1165#0 GGCCACCATCAGACATCACATGCTGACTCCCTTTGTAGAGGAGAACCTGGTCTCGGCTGC 420
consensus_1165#1 GGCTGATACGACTAAAGATGGGCTGATCTCCTTCC---AGGAGTTTTTGGCCTTTG---- 228
*** * * * * ***** **** ***** *** ** *
consensus_1165#0 AGGAGGCAGCACCTCCCACATGGTGAGCTTCTCGTACTTCAACGCCTTCAACGCCCTGCT 480
consensus_1165#1 ---AGACTG--TCCTGTGTGCCCCGGACGCCCTGTTCATAGGTGCCTTTCAG---CTGTT 280
** * * * * * * ** * * ***** * *** *
consensus_1165#0 CAACAACATGGAGCTGATCCGCAAGATTTACAGCACCATCGCAGGCACGCACAGAGACGC 540
consensus_1165#1 CGACAAGAC--------------------------------------------------- 289
* **** *
consensus_1165#0 GCTGGTCACCAAAGAGGAATTTGTTAACACTGCAAATAAATTTGGCCAGATTACTCCGAT 600
consensus_1165#1 ------------------------------------------------------------
consensus_1165#0 GGAG 604
consensus_1165#1 ----
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| Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |