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These datas are free for academic use only, please contact me for any other use. Takifugu rubripes see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1176#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 578 fasta sequence
[CTGCTCACTCGGCTGTTGACTTGATCCAGGAAAGATGCCGCTGCCGCTGCCGCTGCCGCTGCTGCTGCTGCTGCTGCTGCTGCCACCAAGTGCTGGTCAGACCAGGCAGGTACCAGGACTGGAGCACAATAACTCATGCACGTATGTGGTGAATTCCACCTGGTGGTCTTTCCCTGCTGCCAGATTCGAAGCTGTGGCGCAGCAGGTGGAGACCTGCGAGGTCTCTCTGGGCACCGTCCAGCGACAGGTGAATTTGTCCAGCCAACGCATCCCTCAGCTTCTGGCTTTGGTCCAGAACATAACAGCCCGACTCCAGCCGTACCAGTACCTTCAGCACCAGGGCCTGTACTCATCCTTAGCGCTGCGCCAGCTGGTCCAAGAGCTCAGCCAGTTGAGGACCAACGTTGGCCAAATACACAGCCAGATGAACAATATGAAAACACAGCAAATTTCTGAAGAGGTGGAGAAGCTGGAGAAACATGTGGAGAAACTGAAGACGACAGACACCGTCAACATGAAGACCGTCAAAGAGAAGCTGCGTTACCTGAAGAACACTGTGGAGTCCTGCAGGACCATCC]
[+] EMBL BU805717 [CTGCTCACTCGGCTGTTGACTTGATCCAGGAAAGATGCCGCTGCCGCTGCCGCTGCCGCTGCTGCTGCTGCTGCTGCTGCTGCCACCAAGTGCTGGTCAGACCAGGCAGGTACCAGGACTGGAGCACAATAACTCATGCACGTATGTGGTGAATTCCACCTGGTGGTCTTTCCCTGCTGCCAGATTCGAAGCTGTGGCGCAGCAGGTGGAGACCTGCGAGGTCTCTCTGGGCACCGTCCAGCGACAGGTGAATTTGTCCAGCCAACGCATCCCTCAGCTTCTGGCTTTGGTCCAGAACATAACAGCCCGACTCCAGCCGTACCAGTACCTTCAGCACCAGGGCCTGTACTCATCCTTAGCGCTGCGCCAGCTGGTCCAAGAGCTCAGCCAGTTGAGGACCAACGTTGGCCAAATACACAGCCAGATGAACAATATGAAAACACAGCAAATTTCTGAAGAGGTGGAGAAGCTGGAGAAACATGTGGAGAAACTGAAGACGACAGACACCGTCAACATGAAGACCGTCAAAGAGAAGCTGCGTTACCTGAAGAACACTGTGGAGTCCTGCAGGACCATCC]
consensusID : consensus_1176#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 534 fasta sequence
[CTGCTCACTCGGCTGTTGACTTGATCCAGGAAAGATGCCGCTGCCGCTGCCGCTGCCGCTGCCGCTGCCGCTGCCGCTGCCGCTGCCGCTGCTGCTGCTGCTGCTGCTGCTGCCACCAAGTGCTGGTCAGACCAGGCAGGTACCAGGACTGGAGCACAATAACTCGTGCACGTGTGTGGTGAATTCCACCTGGTGGTCTTTCCCTGCTGCCAGATTCGAAGCTGTGGCGCAGCAGGTGGAGACCTGCGAGGTCTCTCTGGGCACCGTCCAGCGACAGGTGAATTTGTCCAGCCAACGCGTCCCTCAGCTTCTGGCTTTGGTCCAGAACATAACAGCCCGACTCCAGCCGTACCAGTACCTTCAGCACCAGGGCCTGTACTCATCCTTAGCGCTGCGCCAGCTGGTCCAAGAGCTCAGCCAGTTGAGGACCAACGTTGGCCAAATACACAGCCAGATGAACAATATGAAAACACAGCAAATTTCTGAAGAGGTGGAGAAGCTGGAGAAACATGTGGAGAAACTGAAGACGACAGA]
[+] EMBL BU806784 [CTGCTCACTCGGCTGTTGACTTGATCCAGGAAAGATGCCGCTGCCGCTGCCGCTGCCGCTGCCGCTGCCGCTGCCGCTGCCGCTGCCGCTGCTGCTGCTGCTGCTGCTGCTGCCACCAAGTGCTGGTCAGACCAGGCAGGTACCAGGACTGGAGCACAATAACTCGTGCACGTGTGTGGTGAATTCCACCTGGTGGTCTTTCCCTGCTGCCAGATTCGAAGCTGTGGCGCAGCAGGTGGAGACCTGCGAGGTCTCTCTGGGCACCGTCCAGCGACAGGTGAATTTGTCCAGCCAACGCGTCCCTCAGCTTCTGGCTTTGGTCCAGAACATAACAGCCCGACTCCAGCCGTACCAGTACCTTCAGCACCAGGGCCTGTACTCATCCTTAGCGCTGCGCCAGCTGGTCCAAGAGCTCAGCCAGTTGAGGACCAACGTTGGCCAAATACACAGCCAGATGAACAATATGAAAACACAGCAAATTTCTGAAGAGGTGGAGAAGCTGGAGAAACATGTGGAGAAACTGAAGACGACAGA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_1176#0 CTGCTCACTCGGCTGTTGACTTGATCCAGGAAAGATGCCGCTGCCGCTGCCGCTGCCGCT 60
consensus_1176#1 CTGCTCACTCGGCTGTTGACTTGATCCAGGAAAGATGCCGCTGCCGCTGCCGCTGCCGCT 60
************************************************************
consensus_1176#0 GC------------------------------TGCTGCTGCTGCTGCTGCTGCCACCAAG 90
consensus_1176#1 GCCGCTGCCGCTGCCGCTGCCGCTGCCGCTGCTGCTGCTGCTGCTGCTGCTGCCACCAAG 120
** ****************************
consensus_1176#0 TGCTGGTCAGACCAGGCAGGTACCAGGACTGGAGCACAATAACTCATGCACGTATGTGGT 150
consensus_1176#1 TGCTGGTCAGACCAGGCAGGTACCAGGACTGGAGCACAATAACTCGTGCACGTGTGTGGT 180
********************************************* ******* ******
consensus_1176#0 GAATTCCACCTGGTGGTCTTTCCCTGCTGCCAGATTCGAAGCTGTGGCGCAGCAGGTGGA 210
consensus_1176#1 GAATTCCACCTGGTGGTCTTTCCCTGCTGCCAGATTCGAAGCTGTGGCGCAGCAGGTGGA 240
************************************************************
consensus_1176#0 GACCTGCGAGGTCTCTCTGGGCACCGTCCAGCGACAGGTGAATTTGTCCAGCCAACGCAT 270
consensus_1176#1 GACCTGCGAGGTCTCTCTGGGCACCGTCCAGCGACAGGTGAATTTGTCCAGCCAACGCGT 300
********************************************************** *
consensus_1176#0 CCCTCAGCTTCTGGCTTTGGTCCAGAACATAACAGCCCGACTCCAGCCGTACCAGTACCT 330
consensus_1176#1 CCCTCAGCTTCTGGCTTTGGTCCAGAACATAACAGCCCGACTCCAGCCGTACCAGTACCT 360
************************************************************
consensus_1176#0 TCAGCACCAGGGCCTGTACTCATCCTTAGCGCTGCGCCAGCTGGTCCAAGAGCTCAGCCA 390
consensus_1176#1 TCAGCACCAGGGCCTGTACTCATCCTTAGCGCTGCGCCAGCTGGTCCAAGAGCTCAGCCA 420
************************************************************
consensus_1176#0 GTTGAGGACCAACGTTGGCCAAATACACAGCCAGATGAACAATATGAAAACACAGCAAAT 450
consensus_1176#1 GTTGAGGACCAACGTTGGCCAAATACACAGCCAGATGAACAATATGAAAACACAGCAAAT 480
************************************************************
consensus_1176#0 TTCTGAAGAGGTGGAGAAGCTGGAGAAACATGTGGAGAAACTGAAGACGACAGACACCGT 510
consensus_1176#1 TTCTGAAGAGGTGGAGAAGCTGGAGAAACATGTGGAGAAACTGAAGACGACAGA------ 534
******************************************************
consensus_1176#0 CAACATGAAGACCGTCAAAGAGAAGCTGCGTTACCTGAAGAACACTGTGGAGTCCTGCAG 570
consensus_1176#1 ------------------------------------------------------------
consensus_1176#0 GACCATCC 578
consensus_1176#1 --------
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| Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |