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These datas are free for academic use only, please contact me for any other use. Takifugu rubripes see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1184#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 571 fasta sequence
[CGGTTCCGGGTATTTTCATACTCCACTCGGCGGCGTTTATCCCTCCGATTATGGTCTTTTATCTGAAACTTCTTCTGATTGTCCACTGATTAAGGCTGGTTGTTTCGCAATTAAATAAAGTCTGGATAAAGGCGCGACCATGACGACCCGATCGGAGAGAGAGAAGGCCCAGAAACTGAACGAGCAGCACCAGGCCATCCTGTCCAAACTGCTGAGAGAGGAGGACAACAAGTACTGCGCCGACTGCGAGGCGAAAGGTCCAAGATGGGCTTCCTGGAATCTGGGAGTGTTTATCTGCATAAGATGCGCGGGCATCCACAGGAACCTGGGAGTACATATATCCAGAGTAAAGTCAGTCAACCTGGACCAGTGGACCTCAGAACAAATCCAGAGTATACAAGATATGGGAAACACCAAGGCCAGAAAGCTCTATGAGGCCAACCTTCCAGAAACCTTCAGAAGACCTCAAACAGACCAAGCTGTGGAATTCTTCATCAGGGATAAATATGAGAAGAAGAAATACTACAGCGAGAAAGTGACCAACGGGAGCAGTCCAAAGGATGCTAAGAAG]
[+] EMBL CA330353 [CGGTTCCGGGTATTTTCATACTCCACTCGGCGGCGTTTATCCCTCCGATTATGGTCTTTTATCTGAAACTTCTTCTGATTGTCCACTGATTAAGGCTGGTTGTTTCGCAATTAAATAAAGTCTGGATAAAGGCGCGACCATGACGACCCGATCGGAGAGAGAGAAGGCCCAGAAACTGAACGAGCAGCACCAGGCCATCCTGTCCAAACTGCTGAGAGAGGAGGACAACAAGTACTGCGCCGACTGCGAGGCGAAAGGTCCAAGATGGGCTTCCTGGAATCTGGGAGTGTTTATCTGCATAAGATGCGCGGGCATCCACAGGAACCTGGGAGTACATATATCCAGAGTAAAGTCAGTCAACCTGGACCAGTGGACCTCAGAACAAATCCAGAGTATACAAGATATGGGAAACACCAAGGCCAGAAAGCTCTATGAGGCCAACCTTCCAGAAACCTTCAGAAGACCTCAAACAGACCAAGCTGTGGAATTCTTCATCAGGGATAAATATGAGAAGAAGAAATACTACAGCGAGAAAGTGACCAACGGGAGCAGTCCAAAGGATGCTAAGAAG]
consensusID : consensus_1184#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 488 fasta sequence
[CCGATTATGGTCTTTTATCTGAAACTTCTTCTGATTGTCCACTGATTAAGGCTGGTTGTTTCGCAATTAAATAAAGTCTGGATAAAGGCGCGACCATGACGACCCGATCGGAGAGAGAGAAGGCCCAGAAACTGAACGAGCAGCACCAGGCCATCCTGTCCAAACTGCTGAGAGAGGAGGACAACAAGTACTGCGCCGACTGCGAGGCGAAAGTCCAAGATGGGCTTTCTGGAATCTGGGAGTGTTATCTGCATAAGATGCGCGGGCATCCACGGGACCCTGGAGGACCTATATCCCGAGTAAAAGCAGTCAACTGGACCCGGGGACCTCAAAACAATCCCAAGTATACAAATTTTGGAAACCCACGGGCCAAAAACTTTTAGGGGCCCCCTCTCAAAAATCTTGAAAAACCTCAAAAGACCACGGGGGGGATTTTTTCCTGGGGGGATTTTGGAGAAAAAAAATTCTCCCCGGAAGAGCCCCCCGGG]
[+] EMBL BU805749 [CCGATTATGGTCTTTTATCTGAAACTTCTTCTGATTGTCCACTGATTAAGGCTGGTTGTTTCGCAATTAAATAAAGTCTGGATAAAGGCGCGACCATGACGACCCGATCGGAGAGAGAGAAGGCCCAGAAACTGAACGAGCAGCACCAGGCCATCCTGTCCAAACTGCTGAGAGAGGAGGACAACAAGTACTGCGCCGACTGCGAGGCGAAAGTCCAAGATGGGCTTTCTGGAATCTGGGAGTGTTATCTGCATAAGATGCGCGGGCATCCACGGGACCCTGGAGGACCTATATCCCGAGTAAAAGCAGTCAACTGGACCCGGGGACCTCAAAACAATCCCAAGTATACAAATTTTGGAAACCCACGGGCCAAAAACTTTTAGGGGCCCCCTCTCAAAAATCTTGAAAAACCTCAAAAGACCACGGGGGGGATTTTTTCCTGGGGGGATTTTGGAGAAAAAAAATTCTCCCCGGAAGAGCCCCCCGGG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_1184#0 CGGTTCCGGGTATTTTCATACTCCACTCGGCGGCGTTTATCCCTCCGATTATGGTCTTTT 60
consensus_1184#1 --------------------------------------------CCGATTATGGTCTTTT 16
****************
consensus_1184#0 ATCTGAAACTTCTTCTGATTGTCCACTGATTAAGGCTGGTTGTTTCGCAATTAAATAAAG 120
consensus_1184#1 ATCTGAAACTTCTTCTGATTGTCCACTGATTAAGGCTGGTTGTTTCGCAATTAAATAAAG 76
************************************************************
consensus_1184#0 TCTGGATAAAGGCGCGACCATGACGACCCGATCGGAGAGAGAGAAGGCCCAGAAACTGAA 180
consensus_1184#1 TCTGGATAAAGGCGCGACCATGACGACCCGATCGGAGAGAGAGAAGGCCCAGAAACTGAA 136
************************************************************
consensus_1184#0 CGAGCAGCACCAGGCCATCCTGTCCAAACTGCTGAGAGAGGAGGACAACAAGTACTGCGC 240
consensus_1184#1 CGAGCAGCACCAGGCCATCCTGTCCAAACTGCTGAGAGAGGAGGACAACAAGTACTGCGC 196
************************************************************
consensus_1184#0 CGACTGCGAGGCGAAAGGTCCAAGATGGGCTTCCTGGAATCTGGGAGTGTTTATCTGCAT 300
consensus_1184#1 CGACTGCGAGGCGAAAG-TCCAAGATGGGCTTTCTGGAATCTGGGAGTGTT-ATCTGCAT 254
***************** ************** ****************** ********
consensus_1184#0 AAGATGCGCGGGCATCCACAGGAACCTGGGAGTACATATATCCAGAGTAAAGTCAGTCAA 360
consensus_1184#1 AAGATGCGCGGGCATCCACGGGACCCTGG-AGGACCTATATCCCGAGTAAAAGCAGTCAA 313
******************* *** ***** ** ** ******* ******* *******
consensus_1184#0 CCTGGACCAGTGGACCTCAGAACAAATCCAGAGTATACAAGATATGGGAAACACCAAGGC 420
consensus_1184#1 C-TGGACCCGGGGACCTCAAAACAA-TCCCAAGTATACAA-ATTTTGGAAACCCACGGGC 370
* ****** * ******** ***** *** ********* ** * ****** * ***
consensus_1184#0 CAGAAAGCTCTATGAGGCCAACCTTCCAGAAACCTTCAGAAGACCTCAAACAGACCAAGC 480
consensus_1184#1 CAAAAACTTTTAGGGGCCC--CCTCTCAAAAATCTTGA-AAAACCTCAAA-AGACCACGG 426
** *** * ** * * ** *** ** *** *** * ** ******** ****** *
consensus_1184#0 TGTGGAATTCTTCATCAGGGATAAATATGAGAAGAAGAAATACTACAGCGAGAAAGTGAC 540
consensus_1184#1 GGGGGATTTTTTCCT--GGGGGGATTTTGGAGAAAAAAAATTCTCCC---CGGAAGAGCC 481
* *** ** *** * *** * * ** * ** **** ** * * *** * *
consensus_1184#0 CAACGGGAGCAGTCCAAAGGATGCTAAGAAG 571
consensus_1184#1 CCCCGGG------------------------ 488
* ****
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| Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |