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Takifugu rubripes
cluster # 1250 cluster # 1250       Sequences # 2       consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_1250#0 length = 457 sequences # 1  
 consensus_1250#1 length = 439 sequences # 1  
consensusID : consensus_1250#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 457
fasta sequence 
                              [GGTTGTCGTTTCACGCAGCCTTTTCGGTGCTTCTGTAGTCGTCTGTCGTTTTTATATTTTTGAGTGCGCCGTACATTTTGTGAAACAGAGAAATATCAAAAGCGACGTGTTGGTGAAAGTTAAAGCTGACAGGAACGTCTGGTAGCAGGAAGCTAGCGAGTTTCTGCTAATGCTAACTGTAGCCGTCCATAAATTAAGGCTGTTCCGGTGTCACTTGGAGGTTGAGTCAGGTTGAACAGGGGGACATGAGTGGCCCCGAGCTCCTGCTGGACTCCAGCATTCGGCTGTGGGTGGTCCTGCCCATCGTCTTCATCACCTTCTTCGTGGGAATCATCCGCCACTACGTGACACAGCTGCTGCACAGCGACAAAAAGGTGGACCTGGAGCAGGTCTCTGACAGTCAGGTGCTGATGCGCAGCCGCGTCCTACGAGAGAACGGGAAGTACATCCCTCGACA]

[+] EMBL CA589514             [GGTTGTCGTTTCACGCAGCCTTTTCGGTGCTTCTGTAGTCGTCTGTCGTTTTTATATTTTTGAGTGCGCCGTACATTTTGTGAAACAGAGAAATATCAAAAGCGACGTGTTGGTGAAAGTTAAAGCTGACAGGAACGTCTGGTAGCAGGAAGCTAGCGAGTTTCTGCTAATGCTAACTGTAGCCGTCCATAAATTAAGGCTGTTCCGGTGTCACTTGGAGGTTGAGTCAGGTTGAACAGGGGGACATGAGTGGCCCCGAGCTCCTGCTGGACTCCAGCATTCGGCTGTGGGTGGTCCTGCCCATCGTCTTCATCACCTTCTTCGTGGGAATCATCCGCCACTACGTGACACAGCTGCTGCACAGCGACAAAAAGGTGGACCTGGAGCAGGTCTCTGACAGTCAGGTGCTGATGCGCAGCCGCGTCCTACGAGAGAACGGGAAGTACATCCCTCGACA]




>consensus_1250#0
GGTTGTCGTTTCACGCAGCCTTTTCGGTGCTTCTGTAGTCGTCTGTCGTTTTTATATTTT
TGAGTGCGCCGTACATTTTGTGAAACAGAGAAATATCAAAAGCGACGTGTTGGTGAAAGT
TAAAGCTGACAGGAACGTCTGGTAGCAGGAAGCTAGCGAGTTTCTGCTAATGCTAACTGT
AGCCGTCCATAAATTAAGGCTGTTCCGGTGTCACTTGGAGGTTGAGTCAGGTTGAACAGG
GGGACATGAGTGGCCCCGAGCTCCTGCTGGACTCCAGCATTCGGCTGTGGGTGGTCCTGC
CCATCGTCTTCATCACCTTCTTCGTGGGAATCATCCGCCACTACGTGACACAGCTGCTGC
ACAGCGACAAAAAGGTGGACCTGGAGCAGGTCTCTGACAGTCAGGTGCTGATGCGCAGCC
GCGTCCTACGAGAGAACGGGAAGTACATCCCTCGACA

consensusID : consensus_1250#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 439
fasta sequence 
                              [CCTGTCTGAAAATGGTGTGCTAAGGTGTTAGCGAGTATACAGGTGATGTTACAGGTTATACTTTAGAACTGGGGGCTGTTCCTGCTGTTCCCAGCCTGTATTTTTAGTGATTCCCGATCGCGTTTCACTCTATTGGTGGAAAGACAAGCACTCTCTGGTTGTGGCTCTTGTCAGGGCCGGACAGGTAACGGTACCGTCTGTGTGGCAGGTTGAACAGGGGGACATGAGTGGCCCCTAGCTCCTGCTGGACTCCAGCATTCGGCTGTGGGTGGTCCTGCCCATCGTCTTCATCACCTTCTTCGTGGGAATCATCCGCCACTACGTGACACAGCTGCTGCACAGCGACAAAAAGGTGGACCTGGAGCAGGTCTCTGACAGTCAGGTGCTGATGCGCAGCCGCGTCCTACGAGAGAACGGGAAGTACATCCCTCGACAGTCA]

[+] EMBL BU806194             [CCTGTCTGAAAATGGTGTGCTAAGGTGTTAGCGAGTATACAGGTGATGTTACAGGTTATACTTTAGAACTGGGGGCTGTTCCTGCTGTTCCCAGCCTGTATTTTTAGTGATTCCCGATCGCGTTTCACTCTATTGGTGGAAAGACAAGCACTCTCTGGTTGTGGCTCTTGTCAGGGCCGGACAGGTAACGGTACCGTCTGTGTGGCAGGTTGAACAGGGGGACATGAGTGGCCCCTAGCTCCTGCTGGACTCCAGCATTCGGCTGTGGGTGGTCCTGCCCATCGTCTTCATCACCTTCTTCGTGGGAATCATCCGCCACTACGTGACACAGCTGCTGCACAGCGACAAAAAGGTGGACCTGGAGCAGGTCTCTGACAGTCAGGTGCTGATGCGCAGCCGCGTCCTACGAGAGAACGGGAAGTACATCCCTCGACAGTCA]




>consensus_1250#1
CCTGTCTGAAAATGGTGTGCTAAGGTGTTAGCGAGTATACAGGTGATGTTACAGGTTATA
CTTTAGAACTGGGGGCTGTTCCTGCTGTTCCCAGCCTGTATTTTTAGTGATTCCCGATCG
CGTTTCACTCTATTGGTGGAAAGACAAGCACTCTCTGGTTGTGGCTCTTGTCAGGGCCGG
ACAGGTAACGGTACCGTCTGTGTGGCAGGTTGAACAGGGGGACATGAGTGGCCCCTAGCT
CCTGCTGGACTCCAGCATTCGGCTGTGGGTGGTCCTGCCCATCGTCTTCATCACCTTCTT
CGTGGGAATCATCCGCCACTACGTGACACAGCTGCTGCACAGCGACAAAAAGGTGGACCT
GGAGCAGGTCTCTGACAGTCAGGTGCTGATGCGCAGCCGCGTCCTACGAGAGAACGGGAA
GTACATCCCTCGACAGTCA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_1250#0      GGTTGTCGTTTCACGCAGCCTTTTCGGTGCTTCTGTAGTCGTCTGTC-GTTTTTATATTT 59
consensus_1250#1      ------------------CCTGTCTGAAAATGGTGTGCTAAGGTGTTAGCGAGTATACAG 42
                                        *** *  *    *  ***  *    ***  *    ****   

consensus_1250#0      TTGAGTGCGCCGTACATTTTGTGAAACAGAGAAATATCAAAAGCGAC--------GTGTT 111
consensus_1250#1      GTGATGTTACAGGTTATACTTTAGAACTGGGGGCTGTTCCTGCTGTTCCCAGCCTGTATT 102
                       ***     * *   **  * *  *** * *   * *       *          ** **

consensus_1250#0      GGTGAAAGTTAAAGCTGACAGGAACGTCTGGTAGCAGGAAGCTAGCGAGTTTCTGCTAAT 171
consensus_1250#1      TTTAGTGATTCCCGATCGCGTTTCACTCTATTGGTGGAAAGACAAGCACTCTCTGGTTGT 162
                        *     **   * *  *       ***  * *  * ***  *   * * **** *  *

consensus_1250#0      GCTAACTGTAGCCGTCCATAAATTAAGGCTGTTCCGGTGTCACTTGGAGGTTGAGTCAGG 231
consensus_1250#1      GGCTCTTGTCAGGGCCGGACAGGTAA--------CGGTACCGTCTG-----TGTGGCAGG 209
                      *     ***    * *    *  ***        ****  *   **     ** * ****

consensus_1250#0      TTGAACAGGGGGACATGAGTGGCCCCGAGCTCCTGCTGGACTCCAGCATTCGGCTGTGGG 291
consensus_1250#1      TTGAACAGGGGGACATGAGTGGCCCCTAGCTCCTGCTGGACTCCAGCATTCGGCTGTGGG 269
                      ************************** *********************************

consensus_1250#0      TGGTCCTGCCCATCGTCTTCATCACCTTCTTCGTGGGAATCATCCGCCACTACGTGACAC 351
consensus_1250#1      TGGTCCTGCCCATCGTCTTCATCACCTTCTTCGTGGGAATCATCCGCCACTACGTGACAC 329
                      ************************************************************

consensus_1250#0      AGCTGCTGCACAGCGACAAAAAGGTGGACCTGGAGCAGGTCTCTGACAGTCAGGTGCTGA 411
consensus_1250#1      AGCTGCTGCACAGCGACAAAAAGGTGGACCTGGAGCAGGTCTCTGACAGTCAGGTGCTGA 389
                      ************************************************************

consensus_1250#0      TGCGCAGCCGCGTCCTACGAGAGAACGGGAAGTACATCCCTCGACA---- 457
consensus_1250#1      TGCGCAGCCGCGTCCTACGAGAGAACGGGAAGTACATCCCTCGACAGTCA 439
                      **********************************************


Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner    (hubert.wassner@noos.fr)