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These datas are free for academic use only, please contact me for any other use. Takifugu rubripes see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1254#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 621 fasta sequence
[GACGTCCGCTTGTCATCACCAGGGCAGCACTGGAAACGAAATGAGATGAGAAACAGAACTTCTTCAATCCACCACGAACCACTAATATAGAGGAGGGGGGAGTACAAGTCCGTTTGCGTCCGTCCCCCACCTCCGGCGAGCATCAAATCGAAGGAAACGGAGGGAGCCAGATCACGAGGAGCAGCCTGACGACAACATGCCCCCCAAGTTTAAGCGGCACCTCAATGATGACGAGGTCACGGGATCGATTCGGAGTGAGAGGAGGAACCTGCTGGAGGAAGACTCAGATGAGGAAGAAGACTTCTTTCTGCGAGGACCCACGGGGCCCAGATTTGGACCTCAGAATGACAGGATGAAGCAGGTGCAGTCGCAGGTGGATGAGGTCATCGACGTGATGCAGGAGAATATTTCCAAGGTGATAGAGAGAGGCGAGCGCCTCGATGACCTCCAGGATAAGTCGGAGAGCCTGTCGGACAACGCGTCGGCCTTCAGTAGCCGAGCCAAACAGCTGCACAGGAGGATGTGGTGGAGGGACATGAAGATGAAGCTGATTATCGCCCTGGTCGTGTTCGCCCTCCTGCTCATCATCATAATTCCCGTGATCCTCCGATAGCGCTAATG]
[+] EMBL BU806249 [GACGTCCGCTTGTCATCACCAGGGCAGCACTGGAAACGAAATGAGATGAGAAACAGAACTTCTTCAATCCACCACGAACCACTAATATAGAGGAGGGGGGAGTACAAGTCCGTTTGCGTCCGTCCCCCACCTCCGGCGAGCATCAAATCGAAGGAAACGGAGGGAGCCAGATCACGAGGAGCAGCCTGACGACAACATGCCCCCCAAGTTTAAGCGGCACCTCAATGATGACGAGGTCACGGGATCGATTCGGAGTGAGAGGAGGAACCTGCTGGAGGAAGACTCAGATGAGGAAGAAGACTTCTTTCTGCGAGGACCCACGGGGCCCAGATTTGGACCTCAGAATGACAGGATGAAGCAGGTGCAGTCGCAGGTGGATGAGGTCATCGACGTGATGCAGGAGAATATTTCCAAGGTGATAGAGAGAGGCGAGCGCCTCGATGACCTCCAGGATAAGTCGGAGAGCCTGTCGGACAACGCGTCGGCCTTCAGTAGCCGAGCCAAACAGCTGCACAGGAGGATGTGGTGGAGGGACATGAAGATGAAGCTGATTATCGCCCTGGTCGTGTTCGCCCTCCTGCTCATCATCATAATTCCCGTGATCCTCCGATAGCGCTAATG]
consensusID : consensus_1254#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 404 fasta sequence
[GGCAGCACTGGAAACGAAATGAGATGAGAAACAGAACTTCGTGAATCCACCACGAACCACTAATATAGAGGAGGNGGGAGTACAAGTCCGTTTGCGTCCGTCCCCCACCTCCGGCGAGCATCAAATCGAAGGAAACGGGCTTTTTATTCCCCTAACATATTGCCGAGAAACGGACGCTGCTGAGAAAGCCACATTGTCCGGCTGAACTGGATTCAATGAGGGGGCCAGATCACGAGGAGCAGCCTGACGACAACATGCCCCCCAAGTTTAAGCGGCACCTCAATGATGACGAGGTCACGGGATCGATTCGGAGTGAGAGGAGGAACCTGCTGGAGGAAGACTCAGATGAGGAAGAAGACTTCTTTCTGCGAGGACCCACGGGGCCCAGAGTTGGACCTCAGAAT]
[+] EMBL FR0060828 [GGCAGCACTGGAAACGAAATGAGATGAGAAACAGAACTTCGTGAATCCACCACGAACCACTAATATAGAGGAGGNGGGAGTACAAGTCCGTTTGCGTCCGTCCCCCACCTCCGGCGAGCATCAAATCGAAGGAAACGGGCTTTTTATTCCCCTAACATATTGCCGAGAAACGGACGCTGCTGAGAAAGCCACATTGTCCGGCTGAACTGGATTCAATGAGGGGGCCAGATCACGAGGAGCAGCCTGACGACAACATGCCCCCCAAGTTTAAGCGGCACCTCAATGATGACGAGGTCACGGGATCGATTCGGAGTGAGAGGAGGAACCTGCTGGAGGAAGACTCAGATGAGGAAGAAGACTTCTTTCTGCGAGGACCCACGGGGCCCAGAGTTGGACCTCAGAAT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_1254#0 GACGTCCGCTTGTCATCACCAGGGCAGCACTGGAAACGAAATGAGATGAGAAACAGAACT 60
consensus_1254#1 ----------------------GGCAGCACTGGAAACGAAATGAGATGAGAAACAGAACT 38
**************************************
consensus_1254#0 TCTTCAATCCACCACGAACCACTAATATAGAGGAGGGGGGAGTACAAGTCCGTTTGCGTC 120
consensus_1254#1 TCGTGAATCCACCACGAACCACTAATATAGAGGAGGNGGGAGTACAAGTCCGTTTGCGTC 98
** * ******************************* ***********************
consensus_1254#0 CGTCCCCCACCTCCGGCGAGCATCAAATCGAAGGAAACGG-------------------- 160
consensus_1254#1 CGTCCCCCACCTCCGGCGAGCATCAAATCGAAGGAAACGGGCTTTTTATTCCCCTAACAT 158
****************************************
consensus_1254#0 ------------------------------------------------------------
consensus_1254#1 ATTGCCGAGAAACGGACGCTGCTGAGAAAGCCACATTGTCCGGCTGAACTGGATTCAATG 218
consensus_1254#0 AGGGAGCCAGATCACGAGGAGCAGCCTGACGACAACATGCCCCCCAAGTTTAAGCGGCAC 220
consensus_1254#1 AGGGGGCCAGATCACGAGGAGCAGCCTGACGACAACATGCCCCCCAAGTTTAAGCGGCAC 278
**** *******************************************************
consensus_1254#0 CTCAATGATGACGAGGTCACGGGATCGATTCGGAGTGAGAGGAGGAACCTGCTGGAGGAA 280
consensus_1254#1 CTCAATGATGACGAGGTCACGGGATCGATTCGGAGTGAGAGGAGGAACCTGCTGGAGGAA 338
************************************************************
consensus_1254#0 GACTCAGATGAGGAAGAAGACTTCTTTCTGCGAGGACCCACGGGGCCCAGATTTGGACCT 340
consensus_1254#1 GACTCAGATGAGGAAGAAGACTTCTTTCTGCGAGGACCCACGGGGCCCAGAGTTGGACCT 398
*************************************************** ********
consensus_1254#0 CAGAATGACAGGATGAAGCAGGTGCAGTCGCAGGTGGATGAGGTCATCGACGTGATGCAG 400
consensus_1254#1 CAGAAT------------------------------------------------------ 404
******
consensus_1254#0 GAGAATATTTCCAAGGTGATAGAGAGAGGCGAGCGCCTCGATGACCTCCAGGATAAGTCG 460
consensus_1254#1 ------------------------------------------------------------
consensus_1254#0 GAGAGCCTGTCGGACAACGCGTCGGCCTTCAGTAGCCGAGCCAAACAGCTGCACAGGAGG 520
consensus_1254#1 ------------------------------------------------------------
consensus_1254#0 ATGTGGTGGAGGGACATGAAGATGAAGCTGATTATCGCCCTGGTCGTGTTCGCCCTCCTG 580
consensus_1254#1 ------------------------------------------------------------
consensus_1254#0 CTCATCATCATAATTCCCGTGATCCTCCGATAGCGCTAATG 621
consensus_1254#1 -----------------------------------------
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| Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |