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Takifugu rubripes
cluster # 1271 cluster # 1271       Sequences # 2       consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_1271#0 length = 618 sequences # 1  
 consensus_1271#1 length = 220 sequences # 1  
consensusID : consensus_1271#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 618
fasta sequence 
                              [GCCAGCGGTTAGCATCTGTGTCTCAAGTTTCATTCAAGAAAACAAGTGACAGTCATGAAGACGCTCCAAAGGAGCGAGGTGGAGCCGCAGGTCGTGAGCAGCGCTGATGCCAACAGGAGCCACGAGTAGAGCAGCAGCATCATGGGGAGGCAGGTTTGACTTCAGCCGAAGGCTCTTCTCCAGAACACGGCCTCCATGGGACGTTGTCATGTCGTTTGAACAGGATCAACTTCTCCTGCCTTTTGCCAGCCTCTTGGCATTTCAGCCTGTCATCGCAAATGATTCCCCGGCTCCTGACGCCGTTCCCCAGACAGCTCCTCTTCATCGGGCTGGTGCTCTGCCTCGTGGGATTGCTCTACCTGCTGACTGCCACTGGGGCCGGGCCTGGAGGCTGGATCAGAACCGATCACTTCCACAGGCGTTTAGCCAGGGTGACCGACGTGGATGCAACTGACACGAGCAACCCCAACCTGAACTACGGCCTTGTGGTGGACTGTGGGAGCAGTGGTTCCAGGGTCTTCGTGTACTGCTGGCCGCGCCATAATGGCAACCTCCACGAGTTACTGAACATCCAACAAATGAGAGATCAGCACCGCAAACCCGTGGTCATGAAAATTA]

[+] EMBL BU806386             [GCCAGCGGTTAGCATCTGTGTCTCAAGTTTCATTCAAGAAAACAAGTGACAGTCATGAAGACGCTCCAAAGGAGCGAGGTGGAGCCGCAGGTCGTGAGCAGCGCTGATGCCAACAGGAGCCACGAGTAGAGCAGCAGCATCATGGGGAGGCAGGTTTGACTTCAGCCGAAGGCTCTTCTCCAGAACACGGCCTCCATGGGACGTTGTCATGTCGTTTGAACAGGATCAACTTCTCCTGCCTTTTGCCAGCCTCTTGGCATTTCAGCCTGTCATCGCAAATGATTCCCCGGCTCCTGACGCCGTTCCCCAGACAGCTCCTCTTCATCGGGCTGGTGCTCTGCCTCGTGGGATTGCTCTACCTGCTGACTGCCACTGGGGCCGGGCCTGGAGGCTGGATCAGAACCGATCACTTCCACAGGCGTTTAGCCAGGGTGACCGACGTGGATGCAACTGACACGAGCAACCCCAACCTGAACTACGGCCTTGTGGTGGACTGTGGGAGCAGTGGTTCCAGGGTCTTCGTGTACTGCTGGCCGCGCCATAATGGCAACCTCCACGAGTTACTGAACATCCAACAAATGAGAGATCAGCACCGCAAACCCGTGGTCATGAAAATTA]




>consensus_1271#0
GCCAGCGGTTAGCATCTGTGTCTCAAGTTTCATTCAAGAAAACAAGTGACAGTCATGAAG
ACGCTCCAAAGGAGCGAGGTGGAGCCGCAGGTCGTGAGCAGCGCTGATGCCAACAGGAGC
CACGAGTAGAGCAGCAGCATCATGGGGAGGCAGGTTTGACTTCAGCCGAAGGCTCTTCTC
CAGAACACGGCCTCCATGGGACGTTGTCATGTCGTTTGAACAGGATCAACTTCTCCTGCC
TTTTGCCAGCCTCTTGGCATTTCAGCCTGTCATCGCAAATGATTCCCCGGCTCCTGACGC
CGTTCCCCAGACAGCTCCTCTTCATCGGGCTGGTGCTCTGCCTCGTGGGATTGCTCTACC
TGCTGACTGCCACTGGGGCCGGGCCTGGAGGCTGGATCAGAACCGATCACTTCCACAGGC
GTTTAGCCAGGGTGACCGACGTGGATGCAACTGACACGAGCAACCCCAACCTGAACTACG
GCCTTGTGGTGGACTGTGGGAGCAGTGGTTCCAGGGTCTTCGTGTACTGCTGGCCGCGCC
ATAATGGCAACCTCCACGAGTTACTGAACATCCAACAAATGAGAGATCAGCACCGCAAAC
CCGTGGTCATGAAAATTA

consensusID : consensus_1271#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 220
fasta sequence 
                              [CATTCTTGAAAACAAGTGACAGTCATGAAGACGCTCCAAAGGATCAAGGTGTAGCCGCACGCTCGCGAGCAGCGCTGATGCCAACAGGAGCCACGAGTAGAGCAGCAGCATCATGGGGAGGATCAACTTCTCCTGCCTTTTGCCAGCCTCTTGGCATTTCAGCCTGTCATCGCAAATGATTCCCCGGCTCCTGACGCCGTTCCCCAGACAGCTCCTCTTC]

[+] EMBL FR0058870            [CATTCTTGAAAACAAGTGACAGTCATGAAGACGCTCCAAAGGATCAAGGTGTAGCCGCACGCTCGCGAGCAGCGCTGATGCCAACAGGAGCCACGAGTAGAGCAGCAGCATCATGGGGAGGATCAACTTCTCCTGCCTTTTGCCAGCCTCTTGGCATTTCAGCCTGTCATCGCAAATGATTCCCCGGCTCCTGACGCCGTTCCCCAGACAGCTCCTCTTC]




>consensus_1271#1
CATTCTTGAAAACAAGTGACAGTCATGAAGACGCTCCAAAGGATCAAGGTGTAGCCGCAC
GCTCGCGAGCAGCGCTGATGCCAACAGGAGCCACGAGTAGAGCAGCAGCATCATGGGGAG
GATCAACTTCTCCTGCCTTTTGCCAGCCTCTTGGCATTTCAGCCTGTCATCGCAAATGAT
TCCCCGGCTCCTGACGCCGTTCCCCAGACAGCTCCTCTTC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_1271#0      GCCAGCGGTTAGCATCTGTGTCTCAAGTTTCATTCAAGAAAACAAGTGACAGTCATGAAG 60
consensus_1271#1      ------------------------------CATTCTTGAAAACAAGTGACAGTCATGAAG 30
                                                    *****  ***********************

consensus_1271#0      ACGCTCCAAAGGAGCGAGGTGGAGCCGCAGG-TCGTGAGCAGCGCTGATGCCAACAGGAG 119
consensus_1271#1      ACGCTCCAAAGGATCAAGGTGTAGCCGCACGCTCGCGAGCAGCGCTGATGCCAACAGGAG 90
                      ************* * ***** ******* * *** ************************

consensus_1271#0      CCACGAGTAGAGCAGCAGCATCATGGGGAGGCAGGTTTGACTTCAGCCGAAGGCTCTTCT 179
consensus_1271#1      CCACGAGTAGAGCAGCAGCATCATGGGGAGG----------------------------- 121
                      *******************************                             

consensus_1271#0      CCAGAACACGGCCTCCATGGGACGTTGTCATGTCGTTTGAACAGGATCAACTTCTCCTGC 239
consensus_1271#1      ---------------------------------------------ATCAACTTCTCCTGC 136
                                                                   ***************

consensus_1271#0      CTTTTGCCAGCCTCTTGGCATTTCAGCCTGTCATCGCAAATGATTCCCCGGCTCCTGACG 299
consensus_1271#1      CTTTTGCCAGCCTCTTGGCATTTCAGCCTGTCATCGCAAATGATTCCCCGGCTCCTGACG 196
                      ************************************************************

consensus_1271#0      CCGTTCCCCAGACAGCTCCTCTTCATCGGGCTGGTGCTCTGCCTCGTGGGATTGCTCTAC 359
consensus_1271#1      CCGTTCCCCAGACAGCTCCTCTTC------------------------------------ 220
                      ************************                                    

consensus_1271#0      CTGCTGACTGCCACTGGGGCCGGGCCTGGAGGCTGGATCAGAACCGATCACTTCCACAGG 419
consensus_1271#1      ------------------------------------------------------------
                                                                                  

consensus_1271#0      CGTTTAGCCAGGGTGACCGACGTGGATGCAACTGACACGAGCAACCCCAACCTGAACTAC 479
consensus_1271#1      ------------------------------------------------------------
                                                                                  

consensus_1271#0      GGCCTTGTGGTGGACTGTGGGAGCAGTGGTTCCAGGGTCTTCGTGTACTGCTGGCCGCGC 539
consensus_1271#1      ------------------------------------------------------------
                                                                                  

consensus_1271#0      CATAATGGCAACCTCCACGAGTTACTGAACATCCAACAAATGAGAGATCAGCACCGCAAA 599
consensus_1271#1      ------------------------------------------------------------
                                                                                  

consensus_1271#0      CCCGTGGTCATGAAAATTA 618
consensus_1271#1      -------------------


Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner    (hubert.wassner@noos.fr)