|
These datas are free for academic use only, please contact me for any other use. Takifugu rubripes see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1272#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 633 fasta sequence
[GTCTGTTGAACGGCAGCACAAGGAGCCGAAGAAAGAAGCGACAGCGGGATGAATTCAACAGCGGACAGTGAGTTAAAACATTAGGGTCACACCAGCCCTCCGTCCTCCATGCCAGCTTCACCAGCTTCACCTCGACAGGACCAGAATGAGCCTATGAGCAACCTGCGCATCTCTGTGGGAGGCCTCCCCCTGCTGGCTTCCATGGGCAACACCACCGACCCCCGTTTCCGCCTCAAGTGGAAGCCCATCGTGCTCGTGGCCTTGTCCCTGACTTTGCTCCTGATGCTGTTCATGCACATGAGCTCGGGCACGCAGTCCCATTCGTACGGCCGACCCAGCTCCAGAGTCGGAGACGCCGACCCCGACGCCACGGACTCCCTCTCACAGTACAATGACACCTACCCGCTCAGCTCACCCGAACGCACCCCAGAGGGCACCCGCTACCGCATCGCCGTCATCGCCGACCTGGACACCAGCTCTAGCAGCGACAAGAAGCTGACGTGGTTCAGCTACATGCGCCGGGGCTACCTGTCGGTGTCGGAGAGCGGGGATAAGGTGGCGGTGGAATGGGAAGGAGACAGGGTGGTGCTGGAAAGCCACCTGTCGGAGAAGGGTCGAGGTATGGAGCTGTCC]
[+] EMBL BU806394 [GTCTGTTGAACGGCAGCACAAGGAGCCGAAGAAAGAAGCGACAGCGGGATGAATTCAACAGCGGACAGTGAGTTAAAACATTAGGGTCACACCAGCCCTCCGTCCTCCATGCCAGCTTCACCAGCTTCACCTCGACAGGACCAGAATGAGCCTATGAGCAACCTGCGCATCTCTGTGGGAGGCCTCCCCCTGCTGGCTTCCATGGGCAACACCACCGACCCCCGTTTCCGCCTCAAGTGGAAGCCCATCGTGCTCGTGGCCTTGTCCCTGACTTTGCTCCTGATGCTGTTCATGCACATGAGCTCGGGCACGCAGTCCCATTCGTACGGCCGACCCAGCTCCAGAGTCGGAGACGCCGACCCCGACGCCACGGACTCCCTCTCACAGTACAATGACACCTACCCGCTCAGCTCACCCGAACGCACCCCAGAGGGCACCCGCTACCGCATCGCCGTCATCGCCGACCTGGACACCAGCTCTAGCAGCGACAAGAAGCTGACGTGGTTCAGCTACATGCGCCGGGGCTACCTGTCGGTGTCGGAGAGCGGGGATAAGGTGGCGGTGGAATGGGAAGGAGACAGGGTGGTGCTGGAAAGCCACCTGTCGGAGAAGGGTCGAGGTATGGAGCTGTCC]
consensusID : consensus_1272#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 576 fasta sequence
[GCGATCTTGTAGCCTTCCAGGTTTACTGTGCTGTGTAATAAATGAAATTCAAATATTTCCATTTAACTAGTTAAATAGGATTCATTATAATAACCGGACTAACCATTAGCTTCAACAAGCCTGTGTTTATCTGCCCCCAGGTCACACCAGCCCTCCGTCCTCCATGCCAGCTTCACCAGCTTCACCTCGACAGGACCAGAATGAGCCTATGAGCAACCTGCGCTTCTCTGTGGGAGGCCTCCCCCTGCTGGCTTCCATGGGCAACACCACCGACCCCCGTTTCCGCCTCAAGTGGAAGCCCATCGTGCTCGTGGCCTTGTCCCTGACTTTGCTCCTGATGCTGTTCATGCACATGAGCTCGGGCACGCAGTCCCATTCGTACGGCCGACCCAGCTCCAGAGTCGGAGACGCCGACCCCGACGCCACGGACTCCCTCTCACAGTACAATGACACCTACCCGCTCAGCTCACCCGAACGCACCCCAGAGGGCACCCGCTACCGCATCGCCGTCATCGCCGACCTGGACACCAGCTCTAGCAGCGACAAGAAGCTGACGTGGTTCAGCTACATGCGCCG]
[+] EMBL BU807128 [GCGATCTTGTAGCCTTCCAGGTTTACTGTGCTGTGTAATAAATGAAATTCAAATATTTCCATTTAACTAGTTAAATAGGATTCATTATAATAACCGGACTAACCATTAGCTTCAACAAGCCTGTGTTTATCTGCCCCCAGGTCACACCAGCCCTCCGTCCTCCATGCCAGCTTCACCAGCTTCACCTCGACAGGACCAGAATGAGCCTATGAGCAACCTGCGCTTCTCTGTGGGAGGCCTCCCCCTGCTGGCTTCCATGGGCAACACCACCGACCCCCGTTTCCGCCTCAAGTGGAAGCCCATCGTGCTCGTGGCCTTGTCCCTGACTTTGCTCCTGATGCTGTTCATGCACATGAGCTCGGGCACGCAGTCCCATTCGTACGGCCGACCCAGCTCCAGAGTCGGAGACGCCGACCCCGACGCCACGGACTCCCTCTCACAGTACAATGACACCTACCCGCTCAGCTCACCCGAACGCACCCCAGAGGGCACCCGCTACCGCATCGCCGTCATCGCCGACCTGGACACCAGCTCTAGCAGCGACAAGAAGCTGACGTGGTTCAGCTACATGCGCCG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_1272#0 --------------------------------------------------------GTCT 4
consensus_1272#1 GCGATCTTGTAGCCTTCCAGGTTTACTGTGCTGTGTAATAAATGAAATTCAAATATTTCC 60
**
consensus_1272#0 GTTGAACGGCAGCACAAGGAGCCGAAGAAAGAAGCG-ACAGCGGGATGAATTCAACAGCG 63
consensus_1272#1 ATTTAACTAGTTAAATAGGATTCATTATAATAACCGGACTAACCATTAGCTTCAACAA-- 118
** *** * **** * ** ** ** ** * *******
consensus_1272#0 GACAGTGAGTTAAAACATTAGGGTCACACCAGCCCTCCGTCCTCCATGCCAGCTTCACCA 123
consensus_1272#1 GCCTGTGTTTATCTGCCCCCAGGTCACACCAGCCCTCCGTCCTCCATGCCAGCTTCACCA 178
* * *** * * ***************************************
consensus_1272#0 GCTTCACCTCGACAGGACCAGAATGAGCCTATGAGCAACCTGCGCATCTCTGTGGGAGGC 183
consensus_1272#1 GCTTCACCTCGACAGGACCAGAATGAGCCTATGAGCAACCTGCGCTTCTCTGTGGGAGGC 238
********************************************* **************
consensus_1272#0 CTCCCCCTGCTGGCTTCCATGGGCAACACCACCGACCCCCGTTTCCGCCTCAAGTGGAAG 243
consensus_1272#1 CTCCCCCTGCTGGCTTCCATGGGCAACACCACCGACCCCCGTTTCCGCCTCAAGTGGAAG 298
************************************************************
consensus_1272#0 CCCATCGTGCTCGTGGCCTTGTCCCTGACTTTGCTCCTGATGCTGTTCATGCACATGAGC 303
consensus_1272#1 CCCATCGTGCTCGTGGCCTTGTCCCTGACTTTGCTCCTGATGCTGTTCATGCACATGAGC 358
************************************************************
consensus_1272#0 TCGGGCACGCAGTCCCATTCGTACGGCCGACCCAGCTCCAGAGTCGGAGACGCCGACCCC 363
consensus_1272#1 TCGGGCACGCAGTCCCATTCGTACGGCCGACCCAGCTCCAGAGTCGGAGACGCCGACCCC 418
************************************************************
consensus_1272#0 GACGCCACGGACTCCCTCTCACAGTACAATGACACCTACCCGCTCAGCTCACCCGAACGC 423
consensus_1272#1 GACGCCACGGACTCCCTCTCACAGTACAATGACACCTACCCGCTCAGCTCACCCGAACGC 478
************************************************************
consensus_1272#0 ACCCCAGAGGGCACCCGCTACCGCATCGCCGTCATCGCCGACCTGGACACCAGCTCTAGC 483
consensus_1272#1 ACCCCAGAGGGCACCCGCTACCGCATCGCCGTCATCGCCGACCTGGACACCAGCTCTAGC 538
************************************************************
consensus_1272#0 AGCGACAAGAAGCTGACGTGGTTCAGCTACATGCGCCGGGGCTACCTGTCGGTGTCGGAG 543
consensus_1272#1 AGCGACAAGAAGCTGACGTGGTTCAGCTACATGCGCCG---------------------- 576
**************************************
consensus_1272#0 AGCGGGGATAAGGTGGCGGTGGAATGGGAAGGAGACAGGGTGGTGCTGGAAAGCCACCTG 603
consensus_1272#1 ------------------------------------------------------------
consensus_1272#0 TCGGAGAAGGGTCGAGGTATGGAGCTGTCC 633
consensus_1272#1 ------------------------------
|
|||||||
| Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |