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These datas are free for academic use only, please contact me for any other use. Takifugu rubripes see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1338#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 586 fasta sequence
[AAACGCGTCAGTCCGGGAGAGAAAGCGGGATTTGTGCCGGCTCGGTCCACCGAGGTGGTTCTGAGATCTCCCAGCTCCACATTCCTCCTGCTCTACCAGTAGGAGCATGGATCCCTCTGCAGACCCCCAGCACCACCCGGCCCAGATGGACTTCTTCCACAAGCTGGGCTACTCCACGGCTCAGGTCCAGGCCATCCAGCAGCAGTTTGGCCCCAACACGGACACAGATAAAGTCCTGGGCGAGCTGGTCCGCATCGGAGCTGGGCAGGAGGCCAAGCAGGAACCCGTGACCACCGTGTCTGTGCTGGTGCCCAGAGGGAACCACCAGAATTCATCCCCCACCGTACAGCTGCCTTTGCCCTCATCTGCTGCAGGTGGAGAGGACAAACACGGGGAGGACGATGTTCTCAGACCCATCGTTCTTGATGGGAGCAACGTGGCCATGAGTCATGGGAACAAGGAAGTTTTCTCTTGTTTGGGAATCCAGCTAGCTGTGAACTTCTTCCTGGAGCGTGGCCACACTCACATTACTGTCTTTGTCCCATCGTGGCGGAAGGAGCAGCCCAGGCCAGACGTTCCTATCACA]
[+] EMBL BU807224 [AAACGCGTCAGTCCGGGAGAGAAAGCGGGATTTGTGCCGGCTCGGTCCACCGAGGTGGTTCTGAGATCTCCCAGCTCCACATTCCTCCTGCTCTACCAGTAGGAGCATGGATCCCTCTGCAGACCCCCAGCACCACCCGGCCCAGATGGACTTCTTCCACAAGCTGGGCTACTCCACGGCTCAGGTCCAGGCCATCCAGCAGCAGTTTGGCCCCAACACGGACACAGATAAAGTCCTGGGCGAGCTGGTCCGCATCGGAGCTGGGCAGGAGGCCAAGCAGGAACCCGTGACCACCGTGTCTGTGCTGGTGCCCAGAGGGAACCACCAGAATTCATCCCCCACCGTACAGCTGCCTTTGCCCTCATCTGCTGCAGGTGGAGAGGACAAACACGGGGAGGACGATGTTCTCAGACCCATCGTTCTTGATGGGAGCAACGTGGCCATGAGTCATGGGAACAAGGAAGTTTTCTCTTGTTTGGGAATCCAGCTAGCTGTGAACTTCTTCCTGGAGCGTGGCCACACTCACATTACTGTCTTTGTCCCATCGTGGCGGAAGGAGCAGCCCAGGCCAGACGTTCCTATCACA]
consensusID : consensus_1338#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 359 fasta sequence
[GGGGGTCTGAGGTTGTTTACGTGAAAAGCAAAAGATGAGCACTGAAGTCAAATTTTGAGCCCATACGTCGCTGACACGTCTGCACAGATCTCCCAGCTCCACATTCCTCCTGCTCTACCAGTAGGAGCATGGATCCCTCTGCAGACCCCCAGCACCACCCGGCCCAGATGGACTTCTTCCACAAGCTGGGCTACTCCACGGCTCAGGTCCAGGCCATCCAGCAGCAGTTTGGCCCCAACACGGACACAGATAAAGTCCTGGGCGAGCTGGGCCGCATCGGAGCTGGGCAGGAGGCCAAGCAGGAACCCGTGACCACCGTGGCTGTGCTGGTGCCCAGAGGGAACCACCAGAATTCATCC]
[+] EMBL FR0061297 [GGGGGTCTGAGGTTGTTTACGTGAAAAGCAAAAGATGAGCACTGAAGTCAAATTTTGAGCCCATACGTCGCTGACACGTCTGCACAGATCTCCCAGCTCCACATTCCTCCTGCTCTACCAGTAGGAGCATGGATCCCTCTGCAGACCCCCAGCACCACCCGGCCCAGATGGACTTCTTCCACAAGCTGGGCTACTCCACGGCTCAGGTCCAGGCCATCCAGCAGCAGTTTGGCCCCAACACGGACACAGATAAAGTCCTGGGCGAGCTGGGCCGCATCGGAGCTGGGCAGGAGGCCAAGCAGGAACCCGTGACCACCGTGGCTGTGCTGGTGCCCAGAGGGAACCACCAGAATTCATCC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_1338#0 -----------------------AAACGCGTCAGTCCGGGAGAGAAAGCGGGATTTGTGC 37
consensus_1338#1 GGGGGTCTGAGGTTGTTTACGTGAAAAGCAAAAGATGAGCACTGAAGTCAAATTTTGAGC 60
*** ** ** * * *** * **** **
consensus_1338#0 CGGCTCGGTCCACCGAGGTGGTTCTG-AGATCTCCCAGCTCCACATTCCTCCTGCTCTAC 96
consensus_1338#1 CCATACG--TCGCTGACACGTCTGCACAGATCTCCCAGCTCCACATTCCTCCTGCTCTAC 118
* ** * * ** * * *********************************
consensus_1338#0 CAGTAGGAGCATGGATCCCTCTGCAGACCCCCAGCACCACCCGGCCCAGATGGACTTCTT 156
consensus_1338#1 CAGTAGGAGCATGGATCCCTCTGCAGACCCCCAGCACCACCCGGCCCAGATGGACTTCTT 178
************************************************************
consensus_1338#0 CCACAAGCTGGGCTACTCCACGGCTCAGGTCCAGGCCATCCAGCAGCAGTTTGGCCCCAA 216
consensus_1338#1 CCACAAGCTGGGCTACTCCACGGCTCAGGTCCAGGCCATCCAGCAGCAGTTTGGCCCCAA 238
************************************************************
consensus_1338#0 CACGGACACAGATAAAGTCCTGGGCGAGCTGGTCCGCATCGGAGCTGGGCAGGAGGCCAA 276
consensus_1338#1 CACGGACACAGATAAAGTCCTGGGCGAGCTGGGCCGCATCGGAGCTGGGCAGGAGGCCAA 298
******************************** ***************************
consensus_1338#0 GCAGGAACCCGTGACCACCGTGTCTGTGCTGGTGCCCAGAGGGAACCACCAGAATTCATC 336
consensus_1338#1 GCAGGAACCCGTGACCACCGTGGCTGTGCTGGTGCCCAGAGGGAACCACCAGAATTCATC 358
********************** *************************************
consensus_1338#0 CCCCACCGTACAGCTGCCTTTGCCCTCATCTGCTGCAGGTGGAGAGGACAAACACGGGGA 396
consensus_1338#1 C----------------------------------------------------------- 359
*
consensus_1338#0 GGACGATGTTCTCAGACCCATCGTTCTTGATGGGAGCAACGTGGCCATGAGTCATGGGAA 456
consensus_1338#1 ------------------------------------------------------------
consensus_1338#0 CAAGGAAGTTTTCTCTTGTTTGGGAATCCAGCTAGCTGTGAACTTCTTCCTGGAGCGTGG 516
consensus_1338#1 ------------------------------------------------------------
consensus_1338#0 CCACACTCACATTACTGTCTTTGTCCCATCGTGGCGGAAGGAGCAGCCCAGGCCAGACGT 576
consensus_1338#1 ------------------------------------------------------------
consensus_1338#0 TCCTATCACA 586
consensus_1338#1 ----------
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| Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |