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These datas are free for academic use only, please contact me for any other use. Takifugu rubripes see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1382#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 554 fasta sequence
[AAAGCCCCAGAAAAACCCACCAAAAAAGTCCCAACCTCTGTTTGCGTGAAAGCTGAAAGCTGCTATCATGTTGAAGTGAAGCTACCAGCTGATGCGGAGACGGCCGGCGTGGACCTGATCGCGTTCGGCGCCGTTGCGAAAATCCTCAAAGACGACAAGTTCGAGATTCTAAGGACGTGGCAGGAAGGAGATCGGACGTGGTTGGTTTGGAGCCAGGATTTCAGGCTCAGAGTCGACAGGGACTTATTGATCCGTTTTAGTCAGGCTAAGATCAGGCTCCAGATATGGAACAGCAAAGGCCAGCTGTCTGGCCTGGCCCGCCTCGAGAGGCTGAAAACCCTGAGGCTGCCACAGGGGCCGTGTGAAGATGCAGCAGACCTGTGTGGTGGCGTCAGGACTCTGGTTCAGAACTTGAGAACCACGTGTATGAGAAAGCCTGAGAAATTCACCCTGGTGGCATCTGAAGCAGGAGTTGGCCACGCCCCCCCTGAAGCTTTCGACCTGAAGGAGGTGATGAAGAGCGGCGCTGTGTCAGCTGAAATCAACCCTGTGTG]
[+] EMBL BU807636 [AAAGCCCCAGAAAAACCCACCAAAAAAGTCCCAACCTCTGTTTGCGTGAAAGCTGAAAGCTGCTATCATGTTGAAGTGAAGCTACCAGCTGATGCGGAGACGGCCGGCGTGGACCTGATCGCGTTCGGCGCCGTTGCGAAAATCCTCAAAGACGACAAGTTCGAGATTCTAAGGACGTGGCAGGAAGGAGATCGGACGTGGTTGGTTTGGAGCCAGGATTTCAGGCTCAGAGTCGACAGGGACTTATTGATCCGTTTTAGTCAGGCTAAGATCAGGCTCCAGATATGGAACAGCAAAGGCCAGCTGTCTGGCCTGGCCCGCCTCGAGAGGCTGAAAACCCTGAGGCTGCCACAGGGGCCGTGTGAAGATGCAGCAGACCTGTGTGGTGGCGTCAGGACTCTGGTTCAGAACTTGAGAACCACGTGTATGAGAAAGCCTGAGAAATTCACCCTGGTGGCATCTGAAGCAGGAGTTGGCCACGCCCCCCCTGAAGCTTTCGACCTGAAGGAGGTGATGAAGAGCGGCGCTGTGTCAGCTGAAATCAACCCTGTGTG]
consensusID : consensus_1382#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 552 fasta sequence
[CCCTGAAGCTTTCGACCTGAAGGAGGTGATGAAGAGCGGCGCTGTGTCAGCTGAAATCAACCCTGTGTGTCTGCTGGCAGGTGAGACCTCACTGACCCAGTCCTTCAGCCTTTACTCCAGCGGTGTGTTTGAGGTCATGTGCGACATTTCTCTGGACCGGCCGTTAATATCTGACCAACTGAAGGCTGAACTCAACCCACTGGCCATCACCATTCTGTCCGCTAAATCACTGCCCCCGTCACATGACCTGCAGGACACGTGTGCACCTGTGTATTGCCAGTACAAGTTCCTTAACTCCAACGTGCACCGCACAAACTATCATAAACACGCCACCAATATTCACTTTGAGGACACAAATGTGGTCCTGACTGGCCTGATGAACCAGGACGAGCTCAGAGAGTTCCTGTCCGGTCCCCCTCTGGAGATAGAGGTTCACGATCGGGACAGAAAAGGTCCAGAACCAGCTGGAGCGTTTGGACCTGACGGCAGTCATTTAAAGCCCAAACCGACAGGAACCAGCTCCTTTGGGGTTGCACACCTGAGTCTCTGTGA]
[+] EMBL CA590650 [CCCTGAAGCTTTCGACCTGAAGGAGGTGATGAAGAGCGGCGCTGTGTCAGCTGAAATCAACCCTGTGTGTCTGCTGGCAGGTGAGACCTCACTGACCCAGTCCTTCAGCCTTTACTCCAGCGGTGTGTTTGAGGTCATGTGCGACATTTCTCTGGACCGGCCGTTAATATCTGACCAACTGAAGGCTGAACTCAACCCACTGGCCATCACCATTCTGTCCGCTAAATCACTGCCCCCGTCACATGACCTGCAGGACACGTGTGCACCTGTGTATTGCCAGTACAAGTTCCTTAACTCCAACGTGCACCGCACAAACTATCATAAACACGCCACCAATATTCACTTTGAGGACACAAATGTGGTCCTGACTGGCCTGATGAACCAGGACGAGCTCAGAGAGTTCCTGTCCGGTCCCCCTCTGGAGATAGAGGTTCACGATCGGGACAGAAAAGGTCCAGAACCAGCTGGAGCGTTTGGACCTGACGGCAGTCATTTAAAGCCCAAACCGACAGGAACCAGCTCCTTTGGGGTTGCACACCTGAGTCTCTGTGA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_1382#0 AAAGCCCCAGAAAAACCCACC--AAAAAAGTCCCAACCTCTGTTTGCGTGAAAGCTGAAA 58
consensus_1382#1 ----CCCTGAAGCTTTCGACCTGAAGGAGGTGATGAAGAGCGGCGCTGTGTCAGCTGAAA 56
*** * * *** ** * ** * * *** ********
consensus_1382#0 GCTGCTAT-CATGTTGAAGTGAAGCTACCAGCTGAT--GCGGAGACGGCCGGCGTGGACC 115
consensus_1382#1 TCAACCCTGTGTGTCTGCTGGCAGGTGAGACCTCACTGACCCAGTCCTTCAGCCTTTACT 116
* * * *** * ** * * ** * * ** * * ** * **
consensus_1382#0 TGATCG---CGTTCGGCGCCGT-TGCGAAAATCCTCAAAGACGACA---AGTTCGAGATT 168
consensus_1382#1 CCAGCGGTGTGTTTGAGGTCATGTGCGACATTTCTCTGGACCGGCCGTTAATATCTGACC 176
* ** *** * * * * ***** * * *** ** * * * **
consensus_1382#0 CTAAGGACGTGGCAGGAAGGAGATCGGACGTGGTTGGTTTG------GAGCCAGGATTTC 222
consensus_1382#1 AACTGAAGGCTGAACTCAACCCACTGGCCATCACCATTCTGTCCGCTAAATCACTGCCCC 236
* * * * * * * ** * * * ** * ** *
consensus_1382#0 AGGCTCAGAGTCGACAGGG-ACTTATTGATCCGTTT-TAGTCAGGCTAAGATCA--GGCT 278
consensus_1382#1 CGTCACATGACCTGCAGGACACGTGTGCACCTGTGTATTGCCAGTACAAGTTCCTTAACT 296
* * ** * **** ** * * * * ** * * * *** *** ** **
consensus_1382#0 CCAGATATGGAACAGCAAAGGCCAGCTGTCTGGCCTGGCCCGCCTCGAGAGGCTGAAAAC 338
consensus_1382#1 CCA-ACGTGCACC-GCACAAACTATC--ATAAACACGCCACCAATATTCACTTTGAGGAC 352
*** * ** * * *** * * * * * * * * * * *** **
consensus_1382#0 CCTGAGGCTGCCACAGG-GGCCGTGTGAAGATGCAGCAGACCTGTGTGGTGGCGTCAGGA 397
consensus_1382#1 ACAAATGTGGTCCTGACTGGCCTGATGAACCAGGACGAGCTCAGAGAGTTCCTGTCCGGT 412
* * * * * **** **** * * ** * * * * * *** **
consensus_1382#0 CTCTGGTTCAGAACTTGAGAACCACGTGTATGAGAAAGCCTGAGAAATTCACCCTGGTGG 457
consensus_1382#1 CCCCC-TCTGGAGATAGAGGTTCACGATCGGGACAGAAAAGGTCCAGAACCAGCTGG-AG 470
* * * ** * *** **** ** * * * * * **** *
consensus_1382#0 CATCTGAAGCAGGAGTTGGCCACGCCCCCCCTGAAGCTTTCGACCTGAAGGAGGTGATGA 517
consensus_1382#1 CGTTTGGACCTGACGGCAGTCATTTAAAGCCCAAA----CCGACAGGAACCAGCTCCTTT 526
* * ** * * * * * ** ** ** **** *** ** * *
consensus_1382#0 AGAGCGGCGCTGTGTCAGCTGAAATCAACCCTGTGTG 554
consensus_1382#1 GGGGTTGCAC-ACCTGAGTCTCTGTGA---------- 552
* * ** * * ** * *
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| Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |