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Takifugu rubripes
cluster # 1461 cluster # 1461       Sequences # 3       consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_1461#0 length = 494 sequences # 2  
 consensus_1461#1 length = 262 sequences # 1  
consensusID : consensus_1461#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 494
fasta sequence 
                              [TTCCAGAAAGCATTAGCTGCTGCAATTCTGGGTAACCGCCTCTATTTAGTTTTTTTGACATGACAGGTCAGGTGTTTAATGGCATGAGCTTCCCACATCACTGCAACACTGACTGGATCTTGGAGCTTGCACCCAACCTGACCCAGGAGAAACAAAGGAATCTCACCCTGCCTTTAAGCAAGGATGGACAGTTTGAAAGTTGTAAAATGTTCACCCCTGTGGGTTGGGATCCGGAAACCATTGAAGTTTATGGGATTAACAGCACAACTGAATGCATAAATGGATGGGTCTATGATGCACCCAAAGGTGCTTCCTCTACTACGACTGAGTTTGATCTTGTTTGCGACAACAATGGCCTGATCACAGCATCTCAGTCCATCTATATGGTAGGCTTCCTGGTTGGGACACTTAGTTTTGGGGCGCTGTCTGACAGATTTGGCCGGAGAATCACAGCCCTGCTCATATTTTTTGACCTGCTGCTTGGTGGCATTGGT]

[+] EMBL FR0059158            [TTCCAGAAAGCATTAGCTGCTGCATTTCTGGGTAACCGCCTCTATTTAGTTTTTTTGACATGACCCCTCCCGTGTTTAATGGCATGAGCTTCCCACATCACTGCAACACTGACTGGATCTTGGAGCTTGCACCCAACCTGACCCAGGAGAAACAATAGAATCTCACCCTGCCTTTAAGCAAGGATGGACAGTTTGAAAGTTGTAAAATGTTCACCCCTGTGGATTGGGATCCTGA                                                                                                                                                                                                                                                                   ]
[+] EMBL CA590821             [                        ATTTTGTATAACC CCTCTATTTAGTTTTTTTGACATGATAGGTCAGGTGTTTAATGGCATGAGCTTCCCACATCACTGCAACACTGACTGGATCTTGGAGCTTGCACCCAACCTGACCCAGGAGAAACAAAGGAATCTCACCCTGCCTTTAAGCAAGGATGGTTTGTTTGAAAGTTGTAAAATGTTCACCCCTGTGGGTTGGGATCTGGAAACCATTGAAGTTTATGGGATTAACAGCACAACTGAATGCATAAATGGATGGGTCTATGATGCACCCAAAGGTGCTTCCTCTACTACGACTGAGTTTGATCTTGTTTGCGACAACAATGGCCTGATCACAGCATCTCAGTCCATCTATATGGTAGGCTTCCTGGTTGGGACACTTAGTTTTGGGGCGCTGTCTGACAGATTTGGCCGGAGAATCACAGCCCTGCTCATATTTTTTGACCTGCTGCTTGGTGGCATTGGT]




>consensus_1461#0
TTCCAGAAAGCATTAGCTGCTGCAATTCTGGGTAACCGCCTCTATTTAGTTTTTTTGACA
TGACAGGTCAGGTGTTTAATGGCATGAGCTTCCCACATCACTGCAACACTGACTGGATCT
TGGAGCTTGCACCCAACCTGACCCAGGAGAAACAAAGGAATCTCACCCTGCCTTTAAGCA
AGGATGGACAGTTTGAAAGTTGTAAAATGTTCACCCCTGTGGGTTGGGATCCGGAAACCA
TTGAAGTTTATGGGATTAACAGCACAACTGAATGCATAAATGGATGGGTCTATGATGCAC
CCAAAGGTGCTTCCTCTACTACGACTGAGTTTGATCTTGTTTGCGACAACAATGGCCTGA
TCACAGCATCTCAGTCCATCTATATGGTAGGCTTCCTGGTTGGGACACTTAGTTTTGGGG
CGCTGTCTGACAGATTTGGCCGGAGAATCACAGCCCTGCTCATATTTTTTGACCTGCTGC
TTGGTGGCATTGGT

consensusID : consensus_1461#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 262
fasta sequence 
                              [TTTGNTTGGTTTATTTCAGAAATCCTTAGTAGGGGCACTCTGCATCCCCACCCTACTTGNNAACTTTTACATAGTTGGACAGGTTTTTACAGACTTGAGGTTCCCACATCACTGCAACACTGACTGGATCTTGGAGCTTGCACCCAACCTGACCCAGGAGAAACAAAGGAATCTCACCCTGGCTTTAAGCAAGGATGGACTGGTTGAAAGCTGTAAAAGTGTCACACCCTGGGGGTTGGGGCCTGGGAAACCATTGAACTTT]

[+] EMBL FR0059605            [TTTGNTTGGTTTATTTCAGAAATCCTTAGTAGGGGCACTCTGCATCCCCACCCTACTTGNNAACTTTTACATAGTTGGACAGGTTTTTACAGACTTGAGGTTCCCACATCACTGCAACACTGACTGGATCTTGGAGCTTGCACCCAACCTGACCCAGGAGAAACAAAGGAATCTCACCCTGGCTTTAAGCAAGGATGGACTGGTTGAAAGCTGTAAAAGTGTCACACCCTGGGGGTTGGGGCCTGGGAAACCATTGAACTTT]




>consensus_1461#1
TTTGNTTGGTTTATTTCAGAAATCCTTAGTAGGGGCACTCTGCATCCCCACCCTACTTGN
NAACTTTTACATAGTTGGACAGGTTTTTACAGACTTGAGGTTCCCACATCACTGCAACAC
TGACTGGATCTTGGAGCTTGCACCCAACCTGACCCAGGAGAAACAAAGGAATCTCACCCT
GGCTTTAAGCAAGGATGGACTGGTTGAAAGCTGTAAAAGTGTCACACCCTGGGGGTTGGG
GCCTGGGAAACCATTGAACTTT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_1461#0      -------------TTCCAGAAAGCATTAGCTGCTGCAATTCTGGGTAACCGCCTCTATTT 47
consensus_1461#1      TTTGNTTGGTTTATTTCAGAAATCCTTAGTAGGGGCA-CTCTGCATCCCCACC-CTACTT 58
                                   ** ****** * ****  *  ***  ****  *  ** ** *** **

consensus_1461#0      AGTTTTTTTGACATGACAGGTCAGGTGTTTAATGGCATGAGCTTCCCACATCACTGCAAC 107
consensus_1461#1      GNNAACTTTTACATAGTTGGACAGGTTTTTACAGACTTGAGGTTCCCACATCACTGCAAC 118
                            *** ****    ** ***** ****  * * **** ******************

consensus_1461#0      ACTGACTGGATCTTGGAGCTTGCACCCAACCTGACCCAGGAGAAACAAAGGAATCTCACC 167
consensus_1461#1      ACTGACTGGATCTTGGAGCTTGCACCCAACCTGACCCAGGAGAAACAAAGGAATCTCACC 178
                      ************************************************************

consensus_1461#0      CTGCCTTTAAGCAAGGATGGACAGTTTGAAAGTTGTAAAATGTTCAC-CCCTGTGGGTTG 226
consensus_1461#1      CTGGCTTTAAGCAAGGATGGACTGGTTGAAAGCTGTAAAAGTGTCACACCCTGGGGGTTG 238
                      *** ****************** * ******* *******   **** ***** ******

consensus_1461#0      GGATCCGG-AAACCATTGAAGTTTATGGGATTAACAGCACAACTGAATGCATAAATGGAT 285
consensus_1461#1      GGGCCTGGGAAACCATTGAACTTT------------------------------------ 262
                      **  * ** *********** ***                                    

consensus_1461#0      GGGTCTATGATGCACCCAAAGGTGCTTCCTCTACTACGACTGAGTTTGATCTTGTTTGCG 345
consensus_1461#1      ------------------------------------------------------------
                                                                                  

consensus_1461#0      ACAACAATGGCCTGATCACAGCATCTCAGTCCATCTATATGGTAGGCTTCCTGGTTGGGA 405
consensus_1461#1      ------------------------------------------------------------
                                                                                  

consensus_1461#0      CACTTAGTTTTGGGGCGCTGTCTGACAGATTTGGCCGGAGAATCACAGCCCTGCTCATAT 465
consensus_1461#1      ------------------------------------------------------------
                                                                                  

consensus_1461#0      TTTTTGACCTGCTGCTTGGTGGCATTGGT 494
consensus_1461#1      -----------------------------


Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner    (hubert.wassner@noos.fr)