cluster # 1469

These datas are free for academic use only, please contact me for any other use.

Takifugu rubripes
cluster # 1469 cluster # 1469 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_1469#0 length = 152 sequences # 2

consensus_1469#1 length = 67 sequences # 1

consensusID : consensus_1469#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 152
fasta sequence

                              [TGAAGCTGCACCGAATCATTTTCTGTTAAAAAGGACAAGTTTTGACTCAAGTGACTGCTGGAATCAACGTTTCAAGACACTCGGCTGTCTTGCTTGACATGAAGTTGTGAACTTAATAAAGTCAAATATGTCAAAACNAAAAAAAAAAAAAA]

[+] EMBL CA845578             [TGAAGCTGCACCGAATCATTTTCTGTTAAAAAGGACAAGTTTTGACTCCAGTGACTGCTGGAATCAACGTTTCAAGACACTCGGCTGTCTTGCTTGACATGAAGTTGTGAACTTAATAAAGTCAAATATGTCAAAACNAAAAAAAAAAAAAA]
[+] EMBL CA847167             [                             AAAGGACAAGTTTTGACTCAAGTGACTGCTGGAATCCTCCTTTCAAGACACTCGGCTGTCTTGCTTGACATGAAGTTGTGAACTTAATAAAGTCAAATATGTCAAAAC               ]




>consensus_1469#0
TGAAGCTGCACCGAATCATTTTCTGTTAAAAAGGACAAGTTTTGACTCAAGTGACTGCTG
GAATCAACGTTTCAAGACACTCGGCTGTCTTGCTTGACATGAAGTTGTGAACTTAATAAA
GTCAAATATGTCAAAACNAAAAAAAAAAAAAA

consensusID : consensus_1469#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 67
fasta sequence

                              [GAGTCAAAACTTGTCCTTTTTAACAGAAAATGATTCGGTGCAGCTTCAATTTACAGCTCTTTTCCCG]

[+] EMBL CA588710             [GAGTCAAAACTTGTCCTTTTTAACAGAAAATGATTCGGTGCAGCTTCAATTTACAGCTCTTTTCCCG]




>consensus_1469#1
GAGTCAAAACTTGTCCTTTTTAACAGAAAATGATTCGGTGCAGCTTCAATTTACAGCTCT
TTTCCCG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_1469#0      TGAAGCTGCACCGAATCATTTTCTGTTAAAAAGGACAAGTTTTGACTCAAGTGACTGCTG 60
consensus_1469#1      -------GAGTCAAAACTTGTCCTTTTTAACAGAAAATGATTCGGTGCAGCTTCAATTTA 53
                             *   * ** * * * ** ** ** ** * * * ** *   **  *      * 

consensus_1469#0      GAATCAACGTTTCAAGACACTCGGCTGTCTTGCTTGACATGAAGTTGTGAACTTAATAAA 120
consensus_1469#1      CAGCTCTTTTCCCG---------------------------------------------- 67
                       *       *  *                                               

consensus_1469#0      GTCAAATATGTCAAAACNAAAAAAAAAAAAAA 152
consensus_1469#1      --------------------------------

Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr)