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These datas are free for academic use only, please contact me for any other use. Takifugu rubripes see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1499#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 633 fasta sequence
[TGAACCATTACAGTATTTTGGAGCTGTCACTTAACCATTTGTAAAGGATAACCTGATCGATGTCTCATTTTATAATTTAACCGTTGTGGGATAATGACATCAAGGAAGAAAGTGCTACTCAAAGTCATCATCCTTGGAGACTCAGGAGTTGGCAAGACCTCACTGATGAATCAGTATGTGAATAAGAAGTTCAGCAACCAGTATAAAGCTACAATAGGTGCTGATTTCCTGACAAAAGAAGTCATGGTGGATGACAGACTTGTCACAATGCAGATTTGGGATACGGCAGGCCAGGAGCGGTTCCAGTCCTTAGGTGTGGCTTTCTACCGTGGAGCTGACTGCTGCGTCCTGGTGTTTGATGTCACGGCGCCAAACACCTTCAAGACTTTGGACAGCTGGCGGGATGAGTTCTTGATCCAGGCCAGCCCTCGAGATCCAGAGAACTTCCCCTTTGTGGTTTTGGGTAATAAGATTGACTTGGAGAACAGACAGGTAACAACCAAGCGGGCACAGGCCTGGTGTCAGAGCAAGAACAACATCCCGTATTTTGAAACCAGCGCCAAGGAGGCGATCAACGTGGAGCAGGCCTTCCAGACCATTGCACGCAACGCCCTTAAACAGGAGACCGAAGTG]
[+] EMBL CA589579 [TGAACCATTACAGTATTTTGGAGCTGTCACTTAACCATTTGTAAAGGATAACCTGATCGATGTCTCATTTTATAATTTAACCGTTGTGGGATAATGACATCAAGGAAGAAAGTGCTACTCAAAGTCATCATCCTTGGAGACTCAGGAGTTGGCAAGACCTCACTGATGAATCAGTATGTGAATAAGAAGTTCAGCAACCAGTATAAAGCTACAATAGGTGCTGATTTCCTGACAAAAGAAGTCATGGTGGATGACAGACTTGTCACAATGCAGATTTGGGATACGGCAGGCCAGGAGCGGTTCCAGTCCTTAGGTGTGGCTTTCTACCGTGGAGCTGACTGCTGCGTCCTGGTGTTTGATGTCACGGCGCCAAACACCTTCAAGACTTTGGACAGCTGGCGGGATGAGTTCTTGATCCAGGCCAGCCCTCGAGATCCAGAGAACTTCCCCTTTGTGGTTTTGGGTAATAAGATTGACTTGGAGAACAGACAGGTAACAACCAAGCGGGCACAGGCCTGGTGTCAGAGCAAGAACAACATCCCGTATTTTGAAACCAGCGCCAAGGAGGCGATCAACGTGGAGCAGGCCTTCCAGACCATTGCACGCAACGCCCTTAAACAGGAGACCGAAGTG]
consensusID : consensus_1499#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 627 fasta sequence
[AGCTTGACAGGAAAAGCGAGCGTCAACAGGAGCTGGGCGAATCAGACTAAATATCCCGTTGTCCACAAAGGGAGATTTAGGCTGGAATCGTTTTATTAAGTCATCAGAGTTGGTTACCAGGCTACTTATCGGCGGTAATAACACTGTCGACGTGTTGTTTTCTTACTACAGACATTAATAGCAGCGTAGCCTGTTAGCTAGCTAAGGCTTCCAGTCGAGGCAGAGGAAAAGTCCACTTCTGATATTTCTTACCGCAGGATCACCGTCGAGTTGTGGGATAATGACATCAAGGAAGAAAGTGCTACTCAAAGTCATCATCCTTGGAGACTCAGGAGTTGGCAAGACCTCACTGATGAATCAGTATGTGAATAAGAAGTTCAGCAACCAGTATAAAGCTACAATAGGTGCTGATTTCCTGACAAAAGAAGTCATGGTGGATGACAGACTTGTCACAATGCAGGTACTCGGGACACGGAAGGCAAGGAGCGGTTCCAGTCCTTAGGTGTGGCTTTCTACCGTGGAGCTGACTGCTGCGTCCTGGTGTTTGATGTCACGGCGCCAAACACCTTCAAGACTTTGGACAGCTGGCGGGATGAGTTCTTGATCCAGGCCAGCCCTCGAGATCCA]
[+] EMBL BU804787 [AGCTTGACAGGAAAAGCGAGCGTCAACAGGAGCTGGGCGAATCAGACTAAATATCCCGTTGTCCACAAAGGGAGATTTAGGCTGGAATCGTTTTATTAAGTCATCAGAGTTGGTTACCAGGCTACTTATCGGCGGTAATAACACTGTCGACGTGTTGTTTTCTTACTACAGACATTAATAGCAGCGTAGCCTGTTAGCTAGCTAAGGCTTCCAGTCGAGGCAGAGGAAAAGTCCACTTCTGATATTTCTTACCGCAGGATCACCGTCGAGTTGTGGGATAATGACATCAAGGAAGAAAGTGCTACTCAAAGTCATCATCCTTGGAGACTCAGGAGTTGGCAAGACCTCACTGATGAATCAGTATGTGAATAAGAAGTTCAGCAACCAGTATAAAGCTACAATAGGTGCTGATTTCCTGACAAAAGAAGTCATGGTGGATGACAGACTTGTCACAATGCAG ATTTGGGATACGGCAGGCCAGGAGCGGTTCCAGTCCTTAGGTGTGGCTTTCTACCGTGGAGCTGACTGCTGCGTCCTGGTGTTTGATGTCACGGCGCCAAACACCTTCAAGACTTTGGACAGCTGGCGGGATGAGTTCTTGATCCAGGCCAGCCCTCGAGATCCA]
[+] EMBL CA589353 [ GAAAAGCGAGCGTCAACAGGAGCTGGGCGAATCTGACTACATATCCCGTTGTCCACAAAGGGAGATTTAGGCTGGAATCGTTTTATTAAGTCATCAGAGTTGGTTACCAGGCTACTTATCGGCGGTAATAACACTGTCGACGTGTTGTTTTCTTACTACAGACATTAATAGCAGCGTAGCCTGTTAGCTAGCTAAGGCTTCCAGTCGAGGCAGAGGAAAAGTCCACTTCTGATATTTCTTACCGCAGGATCACCGTCGAGTTGTGGGATAATGACATCAAGGAAGAAAGTGCTACTCAAAGTCATCATCCTTGGAGACTCAGGAGTTGGCAAGACCTCACTGATGAATCAGTATGTGAATAAGAAGTTCAGCAACCAGTATAAAGCTACAATAGGTGCTGATTTCCTGACAAAAGAAGTCATGGTGGATGACAGACTTGTCACAATGCAGGTACTCATGACACTGAAGTCACAG ]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_1499#0 ------------------------------------------------------------
consensus_1499#1 AGCTTGACAGGAAAAGCGAGCGTCAACAGGAGCTGGGCGAATCAGACTAAATATCCCGTT 60
consensus_1499#0 ------------------------------------------------------------
consensus_1499#1 GTCCACAAAGGGAGATTTAGGCTGGAATCGTTTTATTAAGTCATCAGAGTTGGTTACCAG 120
consensus_1499#0 ------------------------------------------------------------
consensus_1499#1 GCTACTTATCGGCGGTAATAACACTGTCGACGTGTTGTTTTCTTACTACAGACATTAATA 180
consensus_1499#0 ----TGAACCATTACAGTATTTTGGAGCTGTCACTTAACCATTTGTAAAGGATAACCTGA 56
consensus_1499#1 GCAGCGTAGCCTGTTAGCTAGCTAAGGCTTCCAGTCGAGGCAGAGGAAAAGTCCACTT-- 238
* * * * ** * *** ** * * * *** * ** *
consensus_1499#0 TCGATGTCTCATTTTATAATTTAACCGT-----TGTGGGATAATGACATCAAGGAAGAAA 111
consensus_1499#1 CTGATATTTCTTACCGCAGGATCACCGTCGAGTTGTGGGATAATGACATCAAGGAAGAAA 298
*** * ** * * * ***** ***************************
consensus_1499#0 GTGCTACTCAAAGTCATCATCCTTGGAGACTCAGGAGTTGGCAAGACCTCACTGATGAAT 171
consensus_1499#1 GTGCTACTCAAAGTCATCATCCTTGGAGACTCAGGAGTTGGCAAGACCTCACTGATGAAT 358
************************************************************
consensus_1499#0 CAGTATGTGAATAAGAAGTTCAGCAACCAGTATAAAGCTACAATAGGTGCTGATTTCCTG 231
consensus_1499#1 CAGTATGTGAATAAGAAGTTCAGCAACCAGTATAAAGCTACAATAGGTGCTGATTTCCTG 418
************************************************************
consensus_1499#0 ACAAAAGAAGTCATGGTGGATGACAGACTTGTCACAATGCAGAT--TTGGGATACGGCAG 289
consensus_1499#1 ACAAAAGAAGTCATGGTGGATGACAGACTTGTCACAATGCAGGTACTCGGGACACGGAAG 478
****************************************** * * **** **** **
consensus_1499#0 GCCAGGAGCGGTTCCAGTCCTTAGGTGTGGCTTTCTACCGTGGAGCTGACTGCTGCGTCC 349
consensus_1499#1 GCAAGGAGCGGTTCCAGTCCTTAGGTGTGGCTTTCTACCGTGGAGCTGACTGCTGCGTCC 538
** *********************************************************
consensus_1499#0 TGGTGTTTGATGTCACGGCGCCAAACACCTTCAAGACTTTGGACAGCTGGCGGGATGAGT 409
consensus_1499#1 TGGTGTTTGATGTCACGGCGCCAAACACCTTCAAGACTTTGGACAGCTGGCGGGATGAGT 598
************************************************************
consensus_1499#0 TCTTGATCCAGGCCAGCCCTCGAGATCCAGAGAACTTCCCCTTTGTGGTTTTGGGTAATA 469
consensus_1499#1 TCTTGATCCAGGCCAGCCCTCGAGATCCA------------------------------- 627
*****************************
consensus_1499#0 AGATTGACTTGGAGAACAGACAGGTAACAACCAAGCGGGCACAGGCCTGGTGTCAGAGCA 529
consensus_1499#1 ------------------------------------------------------------
consensus_1499#0 AGAACAACATCCCGTATTTTGAAACCAGCGCCAAGGAGGCGATCAACGTGGAGCAGGCCT 589
consensus_1499#1 ------------------------------------------------------------
consensus_1499#0 TCCAGACCATTGCACGCAACGCCCTTAAACAGGAGACCGAAGTG 633
consensus_1499#1 --------------------------------------------
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| Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |