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These datas are free for academic use only, please contact me for any other use. Takifugu rubripes see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1506#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 557 fasta sequence
[AATGCAGGCCGCCACTCGGGAGGATGGGGAGTTGTGTCTTGAATGCATTGAGCGCCCCCAGGACTGATAATATAACCTTCCTACGACAGGCCCTGGAGGATCGACTGATTTCACTCTACTTTGACACCAAACGATACCAGGAGGCCTTGGCTCTTGGTTCCCAGCTGCTCCAGGAGTTGAAAAAGATGGACGACAAAGCTCTTCTGGTTGAATTGCTCCTGCTGAAAAGCAAAACGTACCACATCCTCATCAACCTGTCCAAAGTCCTGGCAGCCCTCACCTCCTCTAGGACCACCGCCAACGCCATCTACTGTCCTCCTAAGCTCCGGTCCGCTCTGGACATGCAGTCAGGAATCACCCATGCAGCAGATGAGAAAGACTGGAAAACGGTCTACTCTTACTACTTCGAGGTCTTCTAGGGGTACGACTCTATCTACAGCCCCAGGGCCATCACAGCTCTTAAATACCTGCTCCTGTGTAAAATTGTTCTAAACCTACCCGAGGAGGTCCAGACCCTCATCTCAGGTAAACTGGGTCTGCGATAGCCCTGCCGACTG]
[+] EMBL BU804685 [AATGCAGGCCGCCACTCGGGAGGATGGGGAGTTGTGTCTTGAATGCATTGAGCGCCCCCAGGACTGATAATATAACCTTCCTACGACAGGCCCTGGAGGATCGACTGATTTCACTCTACTTTGACACCAAACGATACCAGGAGGCCTTGGCTCTTGGTTCCCAGCTGCTCCAGGAGTTGAAAAAGATGGACGACAAAGCTCTTCTGGTTGAATTGCTCCTGCTGAAAAGCAAAACGTACCACATCCTCATCAACCTGTCCAAAGTCCTGGCAGCCCTCACCTCCTCTAGGACCACCGCCAACGCCATCTACTGTCCTCCTAAGCTCCGGTCCGCTCTGGACATGCAGTCAGGAATCACCCATGCAGCAGATGAGAAAGACTGGAAAACGGTCTACTCTTACTACTTCGAGGTCTTCTAGGGGTACGACTCTATCTACAGCCCCAGGGCCATCACAGCTCTTAAATACCTGCTCCTGTGTAAAATTGTTCTAAACCTACCCGAGGAGGTCCAGACCCTCATCTCAGGTAAACTGGGTCTGCGATAGCCCTGCCGACTG]
consensusID : consensus_1506#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 551 fasta sequence
[GACCGAAACGCCTCTATCGACATCCTTCACTCAATAGTGAGGCGAGATGTGCAAGAAAACGATGAAGAAGCTGTTAGGGTTAAAGAACAGAGCATCTTGGAGCTGGGGACGCTCTTAGCCAAGACCGGTCAGGCAGCAGAACTCGGCGGTCTGCTGAAGTTTGTGCGGCCTTTCCTGATTTCTTCAGCAAGGCCAAGGCCGCGCGCCTGGTTCGCTCCCTGCTGGACCTGTTCCTTGACATGGAGGCCGCCACGGGGCAGGAGGTGGAGTTGTGTCTTGAATGCATTGAGTGGGCCAAGGCTGAGAAAAGAACCTTCCTACGACAGGCCCTGGAGGCTCGACTGATTTCACTCTACTTTGACACCAAACGTTACCAGGAGGCCTTGGCTCTTGGTTCCCAGCTGCTCCAGGAGCTGAAAAAGATGGACGACAAAGCTCTTCTGGTTGAAGTCCAGCTGCTGGAAAGCAAGACGTACCACGCCCTCAGCAACCTGCCCAAAGCCCGCGCAGNCCTCACCTCCGCTAGGACCACCGCCAACGCCATCTACTGT]
[+] EMBL BU807678 [GACCGAAACGCCTCTATCGACATCCTTCACTCAATAGTGAGGCGAGATGTGCAAGAAAACGATGAAGAAGCTGTTAGGGTTAAAGAACAGAGCATCTTGGAGCTGGGGACGCTCTTAGCCAAGACCGGTCAGGCAGCAGAACTCGGCGGTCTGCTGAAGTTTGTGCGGCCTTTCCTGATTTCTTCAGCAAGGCCAAGGCCGCGCGCCTGGTTCGCTCCCTGCTGGACCTGTTCCTTGACATGGAGGCCGCCACGGGGCAGGAGGTGGAGTTGTGTCTTGAATGCATTGAGTGGGCCAAGGCTGAGAAAAGAACCTTCCTACGACAGGCCCTGGAGGCTCGACTGATTTCACTCTACTTTGACACCAAACGTTACCAGGAGGCCTTGGCTCTTGGTTCCCAGCTGCTCCAGGAGCTGAAAAAGATGGACGACAAAGCTCTTCTGGTTGAAGTCCAGCTGCTGGAAAGCAAGACGTACCACGCCCTCAGCAACCTGCCCAAAGCCCGCGCAGNCCTCACCTCCGCTAGGACCACCGCCAACGCCATCTACTGT]
consensusID : consensus_1506#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 546 fasta sequence
[TGTACATCCTGTAAACTGCCGAATCCAGGATGTGAATGTGACAGTTATGATGTTTGTGACAGAAATCAGGATGGACCTCCAGCTGAGCCACAGTTAACACTCCATCTTTTCCGACAGGCTCGACTGATTTCACTCTACTTTGACACCAAACGTTACCAGGAGGCCTTGGCTCTTGGTTCCCAGCTGCTCCAGGAGCTGAAAAAGATGGACGACAAAGCTCTTCTGGTTGAAGTCCAGCTGCTGGAAAGCAAGACGTACCACGCCCTCAGCAACCTGCCCAAAGCCCGCGCAGCCCTCACCTCCGCTAGGACCACCGCCAACGCCATCTACTGTCCTCCGAAGCTCCAGGCCGCTCTGGACATGCAGTCAGGAATCACCCATGCAGCAGAGGAGAAGGACTGGAAGACGGCCTACTCTTACTACTTCGAGGCCTTCGAGGGCTACGACTCTATCGACAGCCCCAGGGCCATCACAGCACTTAAATACATGCTCCTGTGTAAAATTGTTCTAAACCTGTGAGTGCAGCCTTGATAACCTTCGCTGATA]
[+] EMBL CA590600 [TGTACATCCTGTAAACTGCCGAATCCAGGATGTGAATGTGACAGTTATGATGTTTGTGACAGAAATCAGGATGGACCTCCAGCTGAGCCACAGTTAACACTCCATCTTTTCCGACAGGCTCGACTGATTTCACTCTACTTTGACACCAAACGTTACCAGGAGGCCTTGGCTCTTGGTTCCCAGCTGCTCCAGGAGCTGAAAAAGATGGACGACAAAGCTCTTCTGGTTGAAGTCCAGCTGCTGGAAAGCAAGACGTACCACGCCCTCAGCAACCTGCCCAAAGCCCGCGCAGCCCTCACCTCCGCTAGGACCACCGCCAACGCCATCTACTGTCCTCCGAAGCTCCAGGCCGCTCTGGACATGCAGTCAGGAATCACCCATGCAGCAGAGGAGAAGGACTGGAAGACGGCCTACTCTTACTACTTCGAGGCCTTCGAGGGCTACGACTCTATCGACAGCCCCAGGGCCATCACAGCACTTAAATACATGCTCCTGTGTAAAATTGTTCTAAACCTGTGAGTGCAGCCTTGATAACCTTCGCTGATA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_1506#0 ------------------------------------------------------------
consensus_1506#2 ------------------------------------------------------------
consensus_1506#1 GACCGAAACGCCTCTATCGACATCCTTCACTCAATAGTGAGGCGAGATGTGCAAGAAAAC 60
consensus_1506#0 ------------------------------------------------------------
consensus_1506#2 ------------------------------------------------------------
consensus_1506#1 GATGAAGAAGCTGTTAGGGTTAAAGAACAGAGCATCTTGGAGCTGGGGACGCTCTTAGCC 120
consensus_1506#0 ------------------------------------------------------------
consensus_1506#2 ------------------------------------------------------------
consensus_1506#1 AAGACCGGTCAGGCAGCAGAACTCGGCGGTCTGCTGAAGTTTGTGCGGCCTTTCCTGATT 180
consensus_1506#0 ------------------------------------------------------------
consensus_1506#2 ---------------------------------------TGTACATCCTGTAAACTGCCG 21
consensus_1506#1 TCTTCAGCAAGGCCAAGGCCGCGCGCCTGGTTCGCTCCCTGCTGGACCTGTTCCTTGAC- 239
consensus_1506#0 AATGCAGGCCGCCACTCGGGAGGATGGGGAGTT-GTGTCTTGAATGCATTGAGCGCCCCC 59
consensus_1506#2 AATCCAGGATGTGAATGTGACAGTTATGATGTTTGTGACAGAAAT-CAGGATGGACCTCC 80
consensus_1506#1 -ATGGAGGCCGCCACGGGGCAGGAGGTGGAGTT-GTGTCTTGAATGCATTGAGTGGG-CC 296
** *** * * * * * *** *** * *** ** * **
consensus_1506#0 AGGACTGATAATATAACCTTCCTACGACAGGCCCTGGAGGATCGACTGATTTCACTCTAC 119
consensus_1506#2 AGCTGAGCCACAGTTAACACTCCAT--CTTTTCCGACAGGCTCGACTGATTTCACTCTAC 138
consensus_1506#1 AAGGCTGAGAAAAGAACCTTCCTACGACAGGCCCTGGAGGCTCGACTGATTTCACTCTAC 356
* * * * * * * * ** *** *******************
consensus_1506#0 TTTGACACCAAACGATACCAGGAGGCCTTGGCTCTTGGTTCCCAGCTGCTCCAGGAGTTG 179
consensus_1506#2 TTTGACACCAAACGTTACCAGGAGGCCTTGGCTCTTGGTTCCCAGCTGCTCCAGGAGCTG 198
consensus_1506#1 TTTGACACCAAACGTTACCAGGAGGCCTTGGCTCTTGGTTCCCAGCTGCTCCAGGAGCTG 416
************** ****************************************** **
consensus_1506#0 AAAAAGATGGACGACAAAGCTCTTCTGGTTGAATTGCTCCTGCTGAAAAGCAAAACGTAC 239
consensus_1506#2 AAAAAGATGGACGACAAAGCTCTTCTGGTTGAAGTCCAGCTGCTGGAAAGCAAGACGTAC 258
consensus_1506#1 AAAAAGATGGACGACAAAGCTCTTCTGGTTGAAGTCCAGCTGCTGGAAAGCAAGACGTAC 476
********************************* * * ****** ******* ******
consensus_1506#0 CACATCCTCATCAACCTGTCCAAAGTCCTGGCAGCCCTCACCTCCTCTAGGACCACCGCC 299
consensus_1506#2 CACGCCCTCAGCAACCTGCCCAAAGCCCGCGCAGCCCTCACCTCCGCTAGGACCACCGCC 318
consensus_1506#1 CACGCCCTCAGCAACCTGCCCAAAGCCCGCGCAGNCCTCACCTCCGCTAGGACCACCGCC 536
*** ***** ******* ****** ** **** ********** **************
consensus_1506#0 AACGCCATCTACTGTCCTCCTAAGCTCCGGTCCGCTCTGGACATGCAGTCAGGAATCACC 359
consensus_1506#2 AACGCCATCTACTGTCCTCCGAAGCTCCAGGCCGCTCTGGACATGCAGTCAGGAATCACC 378
consensus_1506#1 AACGCCATCTACTGT--------------------------------------------- 551
***************
consensus_1506#0 CATGCAGCAGATGAGAAAGACTGGAAAACGGTCTACTCTTACTACTTCGAGGTCTTCTAG 419
consensus_1506#2 CATGCAGCAGAGGAGAAGGACTGGAAGACGGCCTACTCTTACTACTTCGAGGCCTTCGAG 438
consensus_1506#1 ------------------------------------------------------------
consensus_1506#0 GGGTACGACTCTATCTACAGCCCCAGGGCCATCACAGCTCTTAAATACCTGCTCCTGTGT 479
consensus_1506#2 GGCTACGACTCTATCGACAGCCCCAGGGCCATCACAGCACTTAAATACATGCTCCTGTGT 498
consensus_1506#1 ------------------------------------------------------------
consensus_1506#0 AAAATTGTTCTAAACCTACCCGAGGAGGTCCAGACCCTCATCTCAGGTAAACTGGGTCTG 539
consensus_1506#2 AAAATTGTTCTAAACCTGTGAGTGCAG-CCTTGATAACCTTCGCTGATA----------- 546
consensus_1506#1 ------------------------------------------------------------
consensus_1506#0 CGATAGCCCTGCCGACTG 557
consensus_1506#2 ------------------
consensus_1506#1 ------------------
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| Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |